PDB Short entry for 6BTE HEADER TRANSFERASE,LYASE/DNA 06-DEC-17 6BTE TITLE DNA POLYMERASE BETA I260Q BINARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE BETA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7,4.2.99.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA TEMPLATE STRAND; COMPND 9 CHAIN: T; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA PRIMER STRAND; COMPND 13 CHAIN: P; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA DOWNSTREAM STRAND; COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_TAXID: 9606 KEYWDS LYASE, DNA COMPLEX, TRANSFERASE, LYASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.E.ECKENROTH,S.DOUBLIE REVDAT 5 04-OCT-23 6BTE 1 LINK REVDAT 4 04-DEC-19 6BTE 1 REMARK REVDAT 3 28-NOV-18 6BTE 1 JRNL REVDAT 2 03-OCT-18 6BTE 1 JRNL REVDAT 1 26-SEP-18 6BTE 0 JRNL AUTH C.LIPTAK,M.M.MAHMOUD,B.E.ECKENROTH,M.V.MORENO,K.EAST, JRNL AUTH 2 K.S.ALNAJJAR,J.HUANG,J.B.TOWLE-WEICKSEL,S.DOUBLIE,J.P.LORIA, JRNL AUTH 3 J.B.SWEASY JRNL TITL I260Q DNA POLYMERASE BETA HIGHLIGHTS PRECATALYTIC JRNL TITL 2 CONFORMATIONAL REARRANGEMENTS CRITICAL FOR FIDELITY. JRNL REF NUCLEIC ACIDS RES. V. 46 10740 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30239932 JRNL DOI 10.1093/NAR/GKY825 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 40534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.940 REMARK 3 FREE R VALUE TEST SET COUNT : 4030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.9600 - 4.7178 0.99 3774 441 0.1452 0.1783 REMARK 3 2 4.7178 - 3.7542 1.00 3807 418 0.1417 0.1761 REMARK 3 3 3.7542 - 3.2824 1.00 3820 420 0.1648 0.2050 REMARK 3 4 3.2824 - 2.9835 0.99 3781 413 0.2032 0.2547 REMARK 3 5 2.9835 - 2.7704 0.98 3768 396 0.2009 0.2431 REMARK 3 6 2.7704 - 2.6075 0.98 3734 419 0.2102 0.2524 REMARK 3 7 2.6075 - 2.4772 0.98 3776 404 0.2118 0.2912 REMARK 3 8 2.4772 - 2.3696 0.97 3672 404 0.2235 0.2994 REMARK 3 9 2.3696 - 2.2785 0.95 3625 408 0.2379 0.2716 REMARK 3 10 2.2785 - 2.2000 0.72 2747 307 0.2451 0.2773 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3331 REMARK 3 ANGLE : 0.464 4629 REMARK 3 CHIRALITY : 0.020 511 REMARK 3 PLANARITY : 0.002 495 REMARK 3 DIHEDRAL : 17.588 1300 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6632 -8.5542 61.0032 REMARK 3 T TENSOR REMARK 3 T11: 0.1160 T22: 0.1364 REMARK 3 T33: 0.0987 T12: 0.0094 REMARK 3 T13: 0.0270 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.2678 L22: 1.2834 REMARK 3 L33: 1.6099 L12: 0.1835 REMARK 3 L13: 0.4221 L23: 0.1128 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: 0.0673 S13: 0.0008 REMARK 3 S21: -0.1337 S22: -0.0200 S23: -0.0576 REMARK 3 S31: -0.0622 S32: 0.0038 S33: -0.0217 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7719 4.6167 76.8555 REMARK 3 T TENSOR REMARK 3 T11: 0.0866 T22: 0.0669 REMARK 3 T33: 0.1043 T12: 0.0061 REMARK 3 T13: 0.0007 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.8624 L22: 0.8084 REMARK 3 L33: 1.3815 L12: -0.0251 REMARK 3 L13: 0.0647 L23: 0.2512 REMARK 3 S TENSOR REMARK 3 S11: 0.0577 S12: -0.1654 S13: 0.0763 REMARK 3 S21: 0.0884 S22: 0.0029 S23: -0.1125 REMARK 3 S31: -0.0206 S32: -0.0121 S33: -0.0289 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8233 14.1446 73.7616 REMARK 3 T TENSOR REMARK 3 T11: 0.1078 T22: 0.0924 REMARK 3 T33: 0.1271 T12: 0.0395 REMARK 3 T13: 0.0050 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 1.1546 L22: 1.2379 REMARK 3 L33: 1.9213 L12: 0.2447 REMARK 3 L13: 0.5920 L23: 0.0582 REMARK 3 S TENSOR REMARK 3 S11: -0.0951 S12: -0.0826 S13: 0.1593 REMARK 3 S21: 0.1389 S22: 0.0001 S23: 0.0137 REMARK 3 S31: -0.3469 S32: -0.2526 S33: 0.0269 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7112 8.2864 50.8600 REMARK 3 T TENSOR REMARK 3 T11: 0.1296 T22: 0.1269 REMARK 3 T33: 0.1096 T12: 0.0007 REMARK 3 T13: -0.0138 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.6366 L22: 1.3951 REMARK 3 L33: 1.9992 L12: -0.0797 REMARK 3 L13: -0.4216 L23: 0.1690 REMARK 3 S TENSOR REMARK 3 S11: -0.0646 S12: 0.0852 S13: -0.0416 REMARK 3 S21: -0.0572 S22: 0.0271 S23: -0.0481 REMARK 3 S31: -0.1286 S32: 0.0606 S33: 0.0360 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'T' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3028 7.4697 49.1684 REMARK 3 T TENSOR REMARK 3 T11: 0.2778 T22: 0.3968 REMARK 3 T33: 0.2401 T12: 0.0740 REMARK 3 T13: 0.0775 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 3.4420 L22: 0.4506 REMARK 3 L33: 1.6421 L12: 1.2388 REMARK 3 L13: -1.4604 L23: -0.6211 REMARK 3 S TENSOR REMARK 3 S11: -0.1941 S12: 0.2613 S13: 0.4627 REMARK 3 S21: 0.3027 S22: 0.3370 S23: -0.0914 REMARK 3 S31: -0.1629 S32: 0.4889 S33: -0.1679 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'T' AND (RESID 6 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7258 22.7464 67.6719 REMARK 3 T TENSOR REMARK 3 T11: 0.2024 T22: 0.1446 REMARK 3 T33: 0.2842 T12: -0.0479 REMARK 3 T13: -0.0257 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 0.9796 L22: 0.8444 REMARK 3 L33: 0.4822 L12: -0.1044 REMARK 3 L13: -0.1311 L23: -0.5999 REMARK 3 S TENSOR REMARK 3 S11: 0.1618 S12: -0.2088 S13: 0.3117 REMARK 3 S21: 0.0483 S22: -0.1561 S23: -0.4502 REMARK 3 S31: -0.1572 S32: 0.0606 S33: -0.0833 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9167 23.2706 68.0086 REMARK 3 T TENSOR REMARK 3 T11: 0.3010 T22: 0.1203 REMARK 3 T33: 0.2834 T12: -0.0121 REMARK 3 T13: 0.0319 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.3748 L22: 1.8101 REMARK 3 L33: 0.2990 L12: -0.7101 REMARK 3 L13: 0.1211 L23: 0.0608 REMARK 3 S TENSOR REMARK 3 S11: 0.1161 S12: -0.2122 S13: 0.3183 REMARK 3 S21: -0.9563 S22: -0.4609 S23: -0.2763 REMARK 3 S31: -0.1660 S32: -0.0197 S33: 0.1331 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0172 0.4966 49.1809 REMARK 3 T TENSOR REMARK 3 T11: 0.3083 T22: 0.3000 REMARK 3 T33: 0.2308 T12: 0.0271 REMARK 3 T13: 0.1103 T23: 0.1341 REMARK 3 L TENSOR REMARK 3 L11: 1.0345 L22: 4.9771 REMARK 3 L33: 2.0920 L12: -0.8238 REMARK 3 L13: 0.0133 L23: -3.0191 REMARK 3 S TENSOR REMARK 3 S11: 0.6052 S12: 0.4337 S13: 0.3190 REMARK 3 S21: -0.9352 S22: 0.1504 S23: 0.1548 REMARK 3 S31: 0.0245 S32: -0.1473 S33: 0.1645 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER D8 QUEST REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : HELIOS MX MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON 100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT V2016.9-0 REMARK 200 DATA SCALING SOFTWARE : SAINT V2016.9-0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40534 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 18.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.9_1692 REMARK 200 STARTING MODEL: 3ISB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-20% PEG 3350, 175-250 MM SODIUM REMARK 280 ACETATE, 50 MM HEPES PH 7.5, 2 MM TCEP, 1% TERT-BUTANOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.28400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 465 GLU A 9 REMARK 465 GLY A 302 REMARK 465 VAL A 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 10 OG1 CG2 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 LYS A 60 NZ REMARK 470 LYS A 87 CD CE NZ REMARK 470 GLN A 90 CD OE1 NE2 REMARK 470 LYS A 131 CE NZ REMARK 470 GLU A 153 CD OE1 OE2 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 LYS A 206 CD CE NZ REMARK 470 LYS A 209 CE NZ REMARK 470 LYS A 220 CE NZ REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 LYS A 248 CD CE NZ REMARK 470 LEU A 301 CD1 CD2 REMARK 470 VAL A 306 CG1 CG2 REMARK 470 LYS A 326 CD CE NZ REMARK 470 LYS A 331 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 1 P DG D 1 OP3 -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 120 -0.28 -141.42 REMARK 500 CYS A 178 -138.91 -107.06 REMARK 500 ASP A 246 10.18 59.26 REMARK 500 ASN A 294 -168.47 -120.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 60 O REMARK 620 2 LEU A 62 O 86.9 REMARK 620 3 VAL A 65 O 80.6 92.1 REMARK 620 4 HOH A 703 O 91.6 81.7 170.3 REMARK 620 5 DC D 3 OP1 173.0 97.6 93.8 94.4 REMARK 620 6 HOH D 113 O 88.5 170.9 94.9 90.7 87.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 101 O REMARK 620 2 VAL A 103 O 93.0 REMARK 620 3 ILE A 106 O 99.0 89.9 REMARK 620 4 HOH A 758 O 79.5 93.2 176.6 REMARK 620 5 DG P 9 OP1 164.0 97.1 93.4 87.5 REMARK 620 6 HOH P 106 O 84.1 176.5 88.6 88.3 86.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 404 DBREF 6BTE A 1 335 UNP P06746 DPOLB_HUMAN 1 335 DBREF 6BTE T 1 16 PDB 6BTE 6BTE 1 16 DBREF 6BTE P 1 10 PDB 6BTE 6BTE 1 10 DBREF 6BTE D 1 5 PDB 6BTE 6BTE 1 5 SEQADV 6BTE GLN A 260 UNP P06746 ILE 260 ENGINEERED MUTATION SEQRES 1 A 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 A 335 GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU SEQRES 3 A 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 A 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 A 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 A 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 A 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 A 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER SEQRES 9 A 335 GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU SEQRES 10 A 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 A 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 A 335 GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 A 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL SEQRES 14 A 335 ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 A 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 A 335 THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO SEQRES 17 A 335 LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 A 335 HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS SEQRES 19 A 335 PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU SEQRES 20 A 335 LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU GLN SEQRES 21 A 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 A 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 A 335 LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG SEQRES 24 A 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 A 335 VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 A 335 LYS TYR ARG GLU PRO LYS ASP ARG SER GLU SEQRES 1 T 16 DC DC DG DA DC DA DG DC DG DC DA DT DC SEQRES 2 T 16 DA DG DC SEQRES 1 P 10 DG DC DT DG DA DT DG DC DG DC SEQRES 1 D 5 DG DT DC DG DG HET NA A 401 1 HET NA A 402 1 HET CL A 403 1 HET IOD A 404 1 HET IOD A 405 1 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM IOD IODIDE ION FORMUL 5 NA 2(NA 1+) FORMUL 7 CL CL 1- FORMUL 8 IOD 2(I 1-) FORMUL 10 HOH *427(H2 O) HELIX 1 AA1 ASN A 12 VAL A 29 1 18 HELIX 2 AA2 ALA A 32 LYS A 48 1 17 HELIX 3 AA3 SER A 55 LYS A 61 1 7 HELIX 4 AA4 GLY A 66 GLY A 80 1 15 HELIX 5 AA5 LEU A 82 GLN A 90 1 9 HELIX 6 AA6 ASP A 91 THR A 101 1 11 HELIX 7 AA7 GLY A 107 GLU A 117 1 11 HELIX 8 AA8 THR A 121 ARG A 126 1 6 HELIX 9 AA9 LYS A 127 LEU A 132 5 6 HELIX 10 AB1 ASN A 133 TYR A 142 1 10 HELIX 11 AB2 GLY A 144 LYS A 148 5 5 HELIX 12 AB3 ARG A 152 ASP A 170 1 19 HELIX 13 AB4 CYS A 178 ARG A 183 1 6 HELIX 14 AB5 LYS A 209 VAL A 221 1 13 HELIX 15 AB6 PRO A 261 ASP A 263 5 3 HELIX 16 AB7 GLN A 264 GLY A 274 1 11 HELIX 17 AB8 SER A 275 LYS A 289 1 15 HELIX 18 AB9 SER A 315 ILE A 323 1 9 HELIX 19 AC1 GLU A 329 ARG A 333 5 5 SHEET 1 AA1 2 ILE A 150 PRO A 151 0 SHEET 2 AA1 2 SER A 187 SER A 188 -1 O SER A 188 N ILE A 150 SHEET 1 AA2 5 ILE A 174 VAL A 177 0 SHEET 2 AA2 5 MET A 191 THR A 196 -1 O LEU A 194 N THR A 176 SHEET 3 AA2 5 ARG A 253 LEU A 259 1 O ASP A 256 N VAL A 193 SHEET 4 AA2 5 LYS A 234 CYS A 239 -1 N CYS A 239 O ARG A 253 SHEET 5 AA2 5 ILE A 224 LYS A 230 -1 N SER A 229 O MET A 236 SHEET 1 AA3 2 PHE A 291 ILE A 293 0 SHEET 2 AA3 2 ILE A 298 PRO A 300 -1 O ARG A 299 N THR A 292 LINK O LYS A 60 NA NA A 402 1555 1555 2.48 LINK O LEU A 62 NA NA A 402 1555 1555 2.53 LINK O VAL A 65 NA NA A 402 1555 1555 2.52 LINK O THR A 101 NA NA A 401 1555 1555 2.34 LINK O VAL A 103 NA NA A 401 1555 1555 2.54 LINK O ILE A 106 NA NA A 401 1555 1555 2.39 LINK NA NA A 401 O HOH A 758 1555 1555 2.71 LINK NA NA A 401 OP1 DG P 9 1555 1555 2.34 LINK NA NA A 401 O HOH P 106 1555 1555 2.51 LINK NA NA A 402 O HOH A 703 1555 1555 2.63 LINK NA NA A 402 OP1 DC D 3 1555 1555 2.49 LINK NA NA A 402 O HOH D 113 1555 1555 2.47 CISPEP 1 GLY A 274 SER A 275 0 2.00 SITE 1 AC1 6 THR A 101 VAL A 103 ILE A 106 HOH A 758 SITE 2 AC1 6 DG P 9 HOH P 106 SITE 1 AC2 6 LYS A 60 LEU A 62 VAL A 65 HOH A 703 SITE 2 AC2 6 DC D 3 HOH D 113 SITE 1 AC3 4 ASN A 294 THR A 297 ARG A 299 HOH A 819 SITE 1 AC4 2 ALA A 32 HIS A 34 CRYST1 50.942 80.568 55.133 90.00 107.92 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019630 0.000000 0.006348 0.00000 SCALE2 0.000000 0.012412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019063 0.00000