PDB Short entry for 6BTF HEADER TRANSFERASE,LYASE/DNA 06-DEC-17 6BTF TITLE DNA POLYMERASE BETA I260Q TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE BETA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7,4.2.99.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA TEMPLATE STRAND; COMPND 9 CHAIN: T; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA PRIMER STRAND; COMPND 13 CHAIN: P; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA DOWNSTREAM STRAND; COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 MOL_ID: 4; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_TAXID: 9606 KEYWDS LYASE, DNA COMPLEX, TRANSFERASE, LYASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.E.ECKENROTH,S.DOUBLIE REVDAT 5 04-OCT-23 6BTF 1 LINK REVDAT 4 04-DEC-19 6BTF 1 REMARK REVDAT 3 28-NOV-18 6BTF 1 JRNL REVDAT 2 03-OCT-18 6BTF 1 JRNL REVDAT 1 26-SEP-18 6BTF 0 JRNL AUTH C.LIPTAK,M.M.MAHMOUD,B.E.ECKENROTH,M.V.MORENO,K.EAST, JRNL AUTH 2 K.S.ALNAJJAR,J.HUANG,J.B.TOWLE-WEICKSEL,S.DOUBLIE,J.P.LORIA, JRNL AUTH 3 J.B.SWEASY JRNL TITL I260Q DNA POLYMERASE BETA HIGHLIGHTS PRECATALYTIC JRNL TITL 2 CONFORMATIONAL REARRANGEMENTS CRITICAL FOR FIDELITY. JRNL REF NUCLEIC ACIDS RES. V. 46 10740 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30239932 JRNL DOI 10.1093/NAR/GKY825 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.9-1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 82376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.080 REMARK 3 FREE R VALUE TEST SET COUNT : 8300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5596 - 5.4324 0.80 1977 269 0.1759 0.2069 REMARK 3 2 5.4324 - 4.3138 0.94 2377 236 0.1433 0.1938 REMARK 3 3 4.3138 - 3.7691 0.97 2410 267 0.1260 0.1609 REMARK 3 4 3.7691 - 3.4248 0.99 2474 287 0.1415 0.1664 REMARK 3 5 3.4248 - 3.1794 0.99 2465 262 0.1591 0.1968 REMARK 3 6 3.1794 - 2.9921 1.00 2529 272 0.1711 0.2025 REMARK 3 7 2.9921 - 2.8423 1.00 2526 260 0.1739 0.2189 REMARK 3 8 2.8423 - 2.7186 1.00 2507 291 0.1797 0.2188 REMARK 3 9 2.7186 - 2.6140 1.00 2481 279 0.1783 0.2242 REMARK 3 10 2.6140 - 2.5238 1.00 2474 297 0.1805 0.2197 REMARK 3 11 2.5238 - 2.4449 1.00 2546 271 0.1651 0.2286 REMARK 3 12 2.4449 - 2.3750 1.00 2503 257 0.1731 0.2325 REMARK 3 13 2.3750 - 2.3125 1.00 2504 248 0.1772 0.2211 REMARK 3 14 2.3125 - 2.2561 1.00 2536 287 0.1714 0.2054 REMARK 3 15 2.2561 - 2.2048 1.00 2454 283 0.1783 0.2259 REMARK 3 16 2.2048 - 2.1579 1.00 2529 286 0.1765 0.2317 REMARK 3 17 2.1579 - 2.1147 1.00 2478 282 0.1845 0.2106 REMARK 3 18 2.1147 - 2.0748 1.00 2532 299 0.1877 0.2507 REMARK 3 19 2.0748 - 2.0378 1.00 2432 306 0.1934 0.2332 REMARK 3 20 2.0378 - 2.0032 1.00 2569 272 0.1932 0.2438 REMARK 3 21 2.0032 - 1.9709 1.00 2427 301 0.2040 0.2328 REMARK 3 22 1.9709 - 1.9406 1.00 2539 280 0.2090 0.2727 REMARK 3 23 1.9406 - 1.9120 1.00 2478 283 0.2085 0.2319 REMARK 3 24 1.9120 - 1.8851 1.00 2503 272 0.2148 0.2509 REMARK 3 25 1.8851 - 1.8596 1.00 2490 285 0.2269 0.2545 REMARK 3 26 1.8596 - 1.8355 1.00 2573 255 0.2585 0.2754 REMARK 3 27 1.8355 - 1.8125 0.99 2473 239 0.2750 0.3246 REMARK 3 28 1.8125 - 1.7907 0.99 2466 291 0.3163 0.3281 REMARK 3 29 1.7907 - 1.7699 0.98 2446 303 0.3229 0.3387 REMARK 3 30 1.7699 - 1.7500 0.97 2378 280 0.3602 0.4003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3216 REMARK 3 ANGLE : 0.961 4472 REMARK 3 CHIRALITY : 0.039 497 REMARK 3 PLANARITY : 0.004 470 REMARK 3 DIHEDRAL : 19.436 1224 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5913 -3.1418 64.8972 REMARK 3 T TENSOR REMARK 3 T11: 0.1763 T22: 0.1970 REMARK 3 T33: 0.1705 T12: 0.0241 REMARK 3 T13: 0.0073 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 2.5384 L22: 4.3139 REMARK 3 L33: 2.7661 L12: 0.8797 REMARK 3 L13: 0.8945 L23: 0.8182 REMARK 3 S TENSOR REMARK 3 S11: 0.0789 S12: 0.0861 S13: 0.0046 REMARK 3 S21: -0.0818 S22: -0.0157 S23: -0.2367 REMARK 3 S31: 0.0524 S32: 0.0641 S33: -0.0337 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5160 -4.5375 70.8331 REMARK 3 T TENSOR REMARK 3 T11: 0.1898 T22: 0.2028 REMARK 3 T33: 0.1981 T12: 0.0230 REMARK 3 T13: -0.0197 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.4517 L22: 2.4232 REMARK 3 L33: 1.8001 L12: -0.3720 REMARK 3 L13: -0.0142 L23: 1.2413 REMARK 3 S TENSOR REMARK 3 S11: 0.1021 S12: -0.0052 S13: -0.0706 REMARK 3 S21: -0.0070 S22: 0.1209 S23: -0.3187 REMARK 3 S31: 0.2180 S32: 0.2868 S33: -0.2389 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8218 8.1260 83.5518 REMARK 3 T TENSOR REMARK 3 T11: 0.1397 T22: 0.2032 REMARK 3 T33: 0.2098 T12: 0.0265 REMARK 3 T13: -0.0199 T23: -0.0552 REMARK 3 L TENSOR REMARK 3 L11: 5.5698 L22: 2.4835 REMARK 3 L33: 2.0238 L12: 2.1067 REMARK 3 L13: 1.2578 L23: -0.3815 REMARK 3 S TENSOR REMARK 3 S11: 0.1218 S12: -0.6401 S13: 0.0794 REMARK 3 S21: 0.2999 S22: -0.0518 S23: -0.3855 REMARK 3 S31: -0.0738 S32: -0.0037 S33: -0.0891 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1734 11.8413 71.1789 REMARK 3 T TENSOR REMARK 3 T11: 0.1041 T22: 0.1787 REMARK 3 T33: 0.1544 T12: 0.0217 REMARK 3 T13: 0.0107 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.6435 L22: 1.8448 REMARK 3 L33: 2.7773 L12: -0.0338 REMARK 3 L13: 0.4529 L23: 0.0936 REMARK 3 S TENSOR REMARK 3 S11: -0.0267 S12: -0.0741 S13: 0.1239 REMARK 3 S21: 0.0158 S22: 0.0287 S23: 0.1907 REMARK 3 S31: -0.1803 S32: -0.3657 S33: -0.0086 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3627 8.4928 63.0545 REMARK 3 T TENSOR REMARK 3 T11: 0.0938 T22: 0.1248 REMARK 3 T33: 0.1445 T12: -0.0014 REMARK 3 T13: -0.0075 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.4503 L22: 1.8589 REMARK 3 L33: 2.8614 L12: 0.0149 REMARK 3 L13: -0.2294 L23: 0.0332 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: 0.0845 S13: 0.0230 REMARK 3 S21: -0.1801 S22: -0.0285 S23: -0.0553 REMARK 3 S31: -0.1183 S32: 0.0208 S33: 0.0184 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 301 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0228 5.3293 48.9238 REMARK 3 T TENSOR REMARK 3 T11: 0.3148 T22: 0.2959 REMARK 3 T33: 0.1772 T12: 0.0023 REMARK 3 T13: -0.0334 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 2.3770 L22: 4.4076 REMARK 3 L33: 3.4976 L12: 0.4364 REMARK 3 L13: -0.5953 L23: -1.1842 REMARK 3 S TENSOR REMARK 3 S11: -0.1282 S12: 0.4320 S13: -0.0494 REMARK 3 S21: -0.6374 S22: 0.0016 S23: -0.0740 REMARK 3 S31: 0.1450 S32: -0.3106 S33: 0.0923 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'T' AND (RESID 3 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9252 19.7062 64.4405 REMARK 3 T TENSOR REMARK 3 T11: 0.2487 T22: 0.2361 REMARK 3 T33: 0.3939 T12: -0.0691 REMARK 3 T13: 0.0439 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.6976 L22: 1.2593 REMARK 3 L33: 0.7316 L12: -0.0725 REMARK 3 L13: 0.0374 L23: -0.9522 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: 0.1459 S13: 0.4120 REMARK 3 S21: -0.2110 S22: -0.0460 S23: -0.6005 REMARK 3 S31: -0.2757 S32: 0.2834 S33: -0.0291 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4332 23.1568 68.5808 REMARK 3 T TENSOR REMARK 3 T11: 0.2668 T22: 0.1651 REMARK 3 T33: 0.3024 T12: -0.0215 REMARK 3 T13: 0.0239 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 1.5403 L22: 8.4606 REMARK 3 L33: 1.9655 L12: -0.2947 REMARK 3 L13: 0.0281 L23: 0.1959 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: -0.2320 S13: 0.3029 REMARK 3 S21: -0.8789 S22: -0.1972 S23: -0.5270 REMARK 3 S31: -0.1990 S32: -0.0476 S33: 0.1716 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9062 0.5137 49.6911 REMARK 3 T TENSOR REMARK 3 T11: 0.5642 T22: 0.7208 REMARK 3 T33: 0.3145 T12: -0.0764 REMARK 3 T13: 0.3421 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.0541 L22: 3.6116 REMARK 3 L33: 2.8278 L12: 0.8858 REMARK 3 L13: -0.6125 L23: -2.0112 REMARK 3 S TENSOR REMARK 3 S11: 0.1254 S12: 0.7889 S13: 0.3223 REMARK 3 S21: -1.1029 S22: 0.2137 S23: -0.3407 REMARK 3 S31: 0.2952 S32: 0.1526 S33: 0.0985 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BTF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1000231381. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT V2016.9-0 REMARK 200 DATA SCALING SOFTWARE : SADABS V2016.9-0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82376 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 38.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 2FMS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-20% PEG 3350, 175-250 MM SODIUM REMARK 280 ACETATE, 50 MM HEPES PH 7.5, 2 MM TCEP, 1% TERT-BUTANOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.93950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 GLN A 8 REMARK 465 GLU A 9 REMARK 465 THR A 10 REMARK 465 THR A 205 REMARK 465 LYS A 206 REMARK 465 GLN A 207 REMARK 465 GLY A 302 REMARK 465 VAL A 303 REMARK 465 THR A 304 REMARK 465 GLY A 305 REMARK 465 VAL A 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 41 CD CE NZ REMARK 470 LYS A 48 CD CE NZ REMARK 470 LYS A 54 CD CE NZ REMARK 470 LYS A 61 CE NZ REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 LYS A 81 CE NZ REMARK 470 GLU A 86 CD OE1 OE2 REMARK 470 LYS A 87 CD CE NZ REMARK 470 GLN A 90 CG CD OE1 NE2 REMARK 470 ASP A 92 CG OD1 OD2 REMARK 470 LYS A 113 CD CE NZ REMARK 470 GLU A 117 CD OE1 OE2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 LYS A 131 CE NZ REMARK 470 GLU A 153 CD OE1 OE2 REMARK 470 LYS A 167 CD CE NZ REMARK 470 GLU A 203 CD OE1 OE2 REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 GLN A 213 CG CD OE1 NE2 REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 LYS A 220 CE NZ REMARK 470 GLU A 232 CD OE1 OE2 REMARK 470 LYS A 244 CD CE NZ REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 GLU A 288 CD OE1 OE2 REMARK 470 GLU A 309 CG CD OE1 OE2 REMARK 470 LYS A 326 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 1 P DG D 1 OP3 -0.128 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 178 -139.70 -108.30 REMARK 500 ASN A 294 -166.47 -126.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 60 O REMARK 620 2 LEU A 62 O 94.0 REMARK 620 3 VAL A 65 O 89.4 93.4 REMARK 620 4 HOH A 540 O 89.1 176.2 88.8 REMARK 620 5 HOH A 700 O 88.3 82.7 175.4 95.2 REMARK 620 6 DC D 3 OP1 171.2 94.9 90.3 82.0 92.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 101 O REMARK 620 2 VAL A 103 O 98.1 REMARK 620 3 ILE A 106 O 96.6 90.1 REMARK 620 4 HOH A 720 O 82.7 93.4 176.5 REMARK 620 5 DG P 9 OP1 162.2 96.0 94.3 85.5 REMARK 620 6 HOH P 105 O 78.9 174.4 85.6 90.9 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD1 REMARK 620 2 ASP A 192 OD2 97.2 REMARK 620 3 DUP A 405 O2A 93.2 91.2 REMARK 620 4 DUP A 405 O2B 165.0 96.0 93.7 REMARK 620 5 DUP A 405 O3G 87.0 175.6 89.8 79.7 REMARK 620 6 HOH A 607 O 95.1 85.2 171.3 78.7 93.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD1 REMARK 620 2 ASP A 190 OD2 44.7 REMARK 620 3 ASP A 192 OD1 86.5 119.4 REMARK 620 4 ASP A 256 OD2 126.4 99.6 80.9 REMARK 620 5 DUP A 405 O2A 68.4 90.6 103.5 165.2 REMARK 620 6 HOH A 533 O 73.2 54.8 82.0 53.6 140.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DUP A 405 DBREF 6BTF A 1 335 UNP P06746 DPOLB_HUMAN 1 335 DBREF 6BTF T 3 16 PDB 6BTF 6BTF 3 16 DBREF 6BTF P 1 10 PDB 6BTF 6BTF 1 10 DBREF 6BTF D 1 5 PDB 6BTF 6BTF 1 5 SEQADV 6BTF GLN A 260 UNP P06746 ILE 260 ENGINEERED MUTATION SEQRES 1 A 335 MET SER LYS ARG LYS ALA PRO GLN GLU THR LEU ASN GLY SEQRES 2 A 335 GLY ILE THR ASP MET LEU THR GLU LEU ALA ASN PHE GLU SEQRES 3 A 335 LYS ASN VAL SER GLN ALA ILE HIS LYS TYR ASN ALA TYR SEQRES 4 A 335 ARG LYS ALA ALA SER VAL ILE ALA LYS TYR PRO HIS LYS SEQRES 5 A 335 ILE LYS SER GLY ALA GLU ALA LYS LYS LEU PRO GLY VAL SEQRES 6 A 335 GLY THR LYS ILE ALA GLU LYS ILE ASP GLU PHE LEU ALA SEQRES 7 A 335 THR GLY LYS LEU ARG LYS LEU GLU LYS ILE ARG GLN ASP SEQRES 8 A 335 ASP THR SER SER SER ILE ASN PHE LEU THR ARG VAL SER SEQRES 9 A 335 GLY ILE GLY PRO SER ALA ALA ARG LYS PHE VAL ASP GLU SEQRES 10 A 335 GLY ILE LYS THR LEU GLU ASP LEU ARG LYS ASN GLU ASP SEQRES 11 A 335 LYS LEU ASN HIS HIS GLN ARG ILE GLY LEU LYS TYR PHE SEQRES 12 A 335 GLY ASP PHE GLU LYS ARG ILE PRO ARG GLU GLU MET LEU SEQRES 13 A 335 GLN MET GLN ASP ILE VAL LEU ASN GLU VAL LYS LYS VAL SEQRES 14 A 335 ASP SER GLU TYR ILE ALA THR VAL CYS GLY SER PHE ARG SEQRES 15 A 335 ARG GLY ALA GLU SER SER GLY ASP MET ASP VAL LEU LEU SEQRES 16 A 335 THR HIS PRO SER PHE THR SER GLU SER THR LYS GLN PRO SEQRES 17 A 335 LYS LEU LEU HIS GLN VAL VAL GLU GLN LEU GLN LYS VAL SEQRES 18 A 335 HIS PHE ILE THR ASP THR LEU SER LYS GLY GLU THR LYS SEQRES 19 A 335 PHE MET GLY VAL CYS GLN LEU PRO SER LYS ASN ASP GLU SEQRES 20 A 335 LYS GLU TYR PRO HIS ARG ARG ILE ASP ILE ARG LEU GLN SEQRES 21 A 335 PRO LYS ASP GLN TYR TYR CYS GLY VAL LEU TYR PHE THR SEQRES 22 A 335 GLY SER ASP ILE PHE ASN LYS ASN MET ARG ALA HIS ALA SEQRES 23 A 335 LEU GLU LYS GLY PHE THR ILE ASN GLU TYR THR ILE ARG SEQRES 24 A 335 PRO LEU GLY VAL THR GLY VAL ALA GLY GLU PRO LEU PRO SEQRES 25 A 335 VAL ASP SER GLU LYS ASP ILE PHE ASP TYR ILE GLN TRP SEQRES 26 A 335 LYS TYR ARG GLU PRO LYS ASP ARG SER GLU SEQRES 1 T 14 DG DA DC DA DG DC DG DC DA DT DC DA DG SEQRES 2 T 14 DC SEQRES 1 P 10 DG DC DT DG DA DT DG DC DG DC SEQRES 1 D 5 DG DT DC DG DG HET NA A 401 1 HET NA A 402 1 HET MG A 403 1 HET NA A 404 1 HET DUP A 405 28 HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM DUP 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE FORMUL 5 NA 3(NA 1+) FORMUL 7 MG MG 2+ FORMUL 9 DUP C9 H16 N3 O13 P3 FORMUL 10 HOH *337(H2 O) HELIX 1 AA1 ASN A 12 VAL A 29 1 18 HELIX 2 AA2 ALA A 32 TYR A 49 1 18 HELIX 3 AA3 SER A 55 LYS A 61 1 7 HELIX 4 AA4 GLY A 66 GLY A 80 1 15 HELIX 5 AA5 LEU A 82 ASP A 91 1 10 HELIX 6 AA6 ASP A 91 THR A 101 1 11 HELIX 7 AA7 GLY A 107 GLU A 117 1 11 HELIX 8 AA8 THR A 121 LYS A 127 1 7 HELIX 9 AA9 ASN A 128 LEU A 132 5 5 HELIX 10 AB1 ASN A 133 TYR A 142 1 10 HELIX 11 AB2 TYR A 142 GLU A 147 1 6 HELIX 12 AB3 ARG A 152 ASP A 170 1 19 HELIX 13 AB4 CYS A 178 ARG A 183 1 6 HELIX 14 AB5 LYS A 209 VAL A 221 1 13 HELIX 15 AB6 PRO A 261 ASP A 263 5 3 HELIX 16 AB7 GLN A 264 GLY A 274 1 11 HELIX 17 AB8 SER A 275 LYS A 289 1 15 HELIX 18 AB9 SER A 315 ILE A 323 1 9 HELIX 19 AC1 GLU A 329 ARG A 333 5 5 SHEET 1 AA1 2 ILE A 150 PRO A 151 0 SHEET 2 AA1 2 SER A 187 SER A 188 -1 O SER A 188 N ILE A 150 SHEET 1 AA2 5 ILE A 174 VAL A 177 0 SHEET 2 AA2 5 MET A 191 THR A 196 -1 O LEU A 194 N THR A 176 SHEET 3 AA2 5 ARG A 253 LEU A 259 1 O ARG A 258 N LEU A 195 SHEET 4 AA2 5 LYS A 234 CYS A 239 -1 N CYS A 239 O ARG A 253 SHEET 5 AA2 5 ILE A 224 LYS A 230 -1 N LEU A 228 O MET A 236 SHEET 1 AA3 2 PHE A 291 ILE A 293 0 SHEET 2 AA3 2 ILE A 298 PRO A 300 -1 O ARG A 299 N THR A 292 LINK O LYS A 60 NA NA A 402 1555 1555 2.49 LINK O LEU A 62 NA NA A 402 1555 1555 2.45 LINK O VAL A 65 NA NA A 402 1555 1555 2.36 LINK O THR A 101 NA NA A 401 1555 1555 2.27 LINK O VAL A 103 NA NA A 401 1555 1555 2.41 LINK O ILE A 106 NA NA A 401 1555 1555 2.42 LINK OD1 ASP A 190 MG MG A 403 1555 1555 2.08 LINK OD1 ASP A 190 NA NA A 404 1555 1555 3.08 LINK OD2 ASP A 190 NA NA A 404 1555 1555 2.41 LINK OD2 ASP A 192 MG MG A 403 1555 1555 2.30 LINK OD1 ASP A 192 NA NA A 404 1555 1555 2.32 LINK OD2 ASP A 256 NA NA A 404 1555 1555 3.07 LINK NA NA A 401 O HOH A 720 1555 1555 2.42 LINK NA NA A 401 OP1 DG P 9 1555 1555 2.46 LINK NA NA A 401 O HOH P 105 1555 1555 2.58 LINK NA NA A 402 O HOH A 540 1555 1555 2.73 LINK NA NA A 402 O HOH A 700 1555 1555 2.54 LINK NA NA A 402 OP1 DC D 3 1555 1555 2.63 LINK MG MG A 403 O2A DUP A 405 1555 1555 2.14 LINK MG MG A 403 O2B DUP A 405 1555 1555 2.06 LINK MG MG A 403 O3G DUP A 405 1555 1555 2.47 LINK MG MG A 403 O HOH A 607 1555 1555 2.49 LINK NA NA A 404 O2A DUP A 405 1555 1555 2.22 LINK NA NA A 404 O HOH A 533 1555 1555 3.06 CISPEP 1 GLY A 274 SER A 275 0 1.08 SITE 1 AC1 6 THR A 101 VAL A 103 ILE A 106 HOH A 720 SITE 2 AC1 6 DG P 9 HOH P 105 SITE 1 AC2 6 LYS A 60 LEU A 62 VAL A 65 HOH A 540 SITE 2 AC2 6 HOH A 700 DC D 3 SITE 1 AC3 5 ASP A 190 ASP A 192 NA A 404 DUP A 405 SITE 2 AC3 5 HOH A 607 SITE 1 AC4 7 ASP A 190 ASP A 192 ASP A 256 MG A 403 SITE 2 AC4 7 DUP A 405 HOH A 533 DC P 10 SITE 1 AC5 25 ARG A 149 GLY A 179 SER A 180 ARG A 183 SITE 2 AC5 25 SER A 188 GLY A 189 ASP A 190 ASP A 192 SITE 3 AC5 25 TYR A 271 PHE A 272 THR A 273 GLY A 274 SITE 4 AC5 25 ASP A 276 ASN A 279 MG A 403 NA A 404 SITE 5 AC5 25 HOH A 505 HOH A 510 HOH A 532 HOH A 607 SITE 6 AC5 25 HOH A 609 HOH A 614 HOH A 719 DC P 10 SITE 7 AC5 25 DA T 6 CRYST1 50.610 79.879 55.382 90.00 107.40 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019759 0.000000 0.006193 0.00000 SCALE2 0.000000 0.012519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018922 0.00000