PDB Short entry for 6BYY HEADER TRANSCRIPTION/DNA 21-DEC-17 6BYY TITLE MEF2 CHIMERA/DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEF2 CHIMERA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: SERUM RESPONSE FACTOR-LIKE PROTEIN 1,RSRFR2,SERUM RESPONSE COMPND 5 FACTOR-LIKE PROTEIN 2,SERUM RESPONSE FACTOR-LIKE PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*GP*A)-3'); COMPND 9 CHAIN: K, E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(P*TP*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*TP*T)- COMPND 13 3'); COMPND 14 CHAIN: L, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MEF2A, MEF2, MEF2B, XMEF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606 KEYWDS MEF2A MEF2B MEF2 CHIMERA, TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.LEI,L.CHEN REVDAT 5 13-MAR-24 6BYY 1 REMARK REVDAT 4 18-DEC-19 6BYY 1 REMARK REVDAT 3 11-APR-18 6BYY 1 JRNL REVDAT 2 07-MAR-18 6BYY 1 JRNL REVDAT 1 31-JAN-18 6BYY 0 JRNL AUTH X.LEI,Y.KOU,Y.FU,N.RAJASHEKAR,H.SHI,F.WU,J.XU,Y.LUO,L.CHEN JRNL TITL THE CANCER MUTATION D83V INDUCES AN ALPHA-HELIX TO JRNL TITL 2 BETA-STRAND CONFORMATION SWITCH IN MEF2B. JRNL REF J. MOL. BIOL. V. 430 1157 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 29477338 JRNL DOI 10.1016/J.JMB.2018.02.012 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2926 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.670 REMARK 3 FREE R VALUE TEST SET COUNT : 1364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.8547 - 4.9543 1.00 2934 169 0.2070 0.2513 REMARK 3 2 4.9543 - 3.9327 1.00 2830 120 0.1863 0.2231 REMARK 3 3 3.9327 - 3.4357 1.00 2798 142 0.2060 0.2500 REMARK 3 4 3.4357 - 3.1216 1.00 2774 125 0.2052 0.2682 REMARK 3 5 3.1216 - 2.8978 1.00 2755 152 0.2387 0.2921 REMARK 3 6 2.8978 - 2.7270 1.00 2735 151 0.2416 0.2813 REMARK 3 7 2.7270 - 2.5904 1.00 2744 121 0.2313 0.2898 REMARK 3 8 2.5904 - 2.4777 1.00 2753 131 0.2309 0.3049 REMARK 3 9 2.4777 - 2.3823 1.00 2772 102 0.2390 0.3369 REMARK 3 10 2.3823 - 2.3001 1.00 2720 151 0.2613 0.3623 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6BYY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000231816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29180 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 54.855 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HAC PH 4.7, 150 MM NACL, 10 MM REMARK 280 CACL2, 5 MM MGCL2 AND 28% PEG 400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.67500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.67500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 231 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 113 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 93 REMARK 465 ARG A 94 REMARK 465 GLY A 95 REMARK 465 MET B 1 REMARK 465 HIS B 93 REMARK 465 ARG B 94 REMARK 465 GLY B 95 REMARK 465 MET C 1 REMARK 465 HIS C 93 REMARK 465 ARG C 94 REMARK 465 GLY C 95 REMARK 465 MET D 1 REMARK 465 ARG D 91 REMARK 465 GLU D 92 REMARK 465 HIS D 93 REMARK 465 ARG D 94 REMARK 465 GLY D 95 REMARK 465 DT L 1 REMARK 465 DT F 1 REMARK 465 DT F 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 256 O HOH A 257 1.91 REMARK 500 OP2 DG K 14 O HOH K 101 1.91 REMARK 500 O4 DT L 14 O HOH L 101 1.96 REMARK 500 OG1 THR B 60 O HOH B 101 1.99 REMARK 500 OH TYR B 33 O HOH B 102 2.00 REMARK 500 O HOH A 240 O HOH L 117 2.01 REMARK 500 OG1 THR A 20 O HOH A 201 2.04 REMARK 500 N7 DA L 9 O HOH L 102 2.10 REMARK 500 OE2 GLU A 74 O HOH A 202 2.11 REMARK 500 OD1 ASP D 63 O HOH D 101 2.12 REMARK 500 OP2 DT F 7 O HOH F 201 2.12 REMARK 500 OP1 DA K 6 O HOH K 102 2.15 REMARK 500 O HOH K 104 O HOH K 126 2.18 REMARK 500 O HOH A 238 O HOH A 250 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 112 O HOH D 112 2555 1.89 REMARK 500 O HOH C 109 O HOH F 205 4554 2.03 REMARK 500 NH2 ARG B 79 OP1 DC L 3 3555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT K 5 O3' DT K 5 C3' -0.041 REMARK 500 DT K 11 O3' DT K 11 C3' -0.062 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC L 3 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT E 11 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC F 3 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT F 11 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 60 -48.52 -137.51 REMARK 500 ASP B 61 109.93 -34.65 REMARK 500 ASP C 40 81.91 53.93 REMARK 500 THR C 60 -66.12 -128.36 REMARK 500 ARG D 3 -57.42 56.95 REMARK 500 LYS D 89 76.22 -157.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PG A 102 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TCE F 101 DBREF 6BYY A 1 64 UNP Q02078 MEF2A_HUMAN 1 64 DBREF 6BYY A 65 91 UNP Q02080 MEF2B_HUMAN 65 91 DBREF 6BYY A 92 95 UNP Q02078 MEF2A_HUMAN 92 95 DBREF 6BYY B 1 64 UNP Q02078 MEF2A_HUMAN 1 64 DBREF 6BYY B 65 91 UNP Q02080 MEF2B_HUMAN 65 91 DBREF 6BYY B 92 95 UNP Q02078 MEF2A_HUMAN 92 95 DBREF 6BYY C 1 64 UNP Q02078 MEF2A_HUMAN 1 64 DBREF 6BYY C 65 91 UNP Q02080 MEF2B_HUMAN 65 91 DBREF 6BYY C 92 95 UNP Q02078 MEF2A_HUMAN 92 95 DBREF 6BYY D 1 64 UNP Q02078 MEF2A_HUMAN 1 64 DBREF 6BYY D 65 91 UNP Q02080 MEF2B_HUMAN 65 91 DBREF 6BYY D 92 95 UNP Q02078 MEF2A_HUMAN 92 95 DBREF 6BYY K 2 15 PDB 6BYY 6BYY 2 15 DBREF 6BYY L 1 15 PDB 6BYY 6BYY 1 15 DBREF 6BYY E 2 15 PDB 6BYY 6BYY 2 15 DBREF 6BYY F 1 15 PDB 6BYY 6BYY 1 15 SEQRES 1 A 95 MET GLY ARG LYS LYS ILE GLN ILE THR ARG ILE MET ASP SEQRES 2 A 95 GLU ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE SEQRES 3 A 95 GLY LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS SEQRES 4 A 95 ASP CYS GLU ILE ALA LEU ILE ILE PHE ASN SER SER ASN SEQRES 5 A 95 LYS LEU PHE GLN TYR ALA SER THR ASP MET ASP LYS VAL SEQRES 6 A 95 LEU LEU LYS TYR THR GLU TYR SER GLU PRO HIS GLU SER SEQRES 7 A 95 ARG THR ASN THR ASP ILE LEU GLU THR LEU LYS ARG ARG SEQRES 8 A 95 GLU HIS ARG GLY SEQRES 1 B 95 MET GLY ARG LYS LYS ILE GLN ILE THR ARG ILE MET ASP SEQRES 2 B 95 GLU ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE SEQRES 3 B 95 GLY LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS SEQRES 4 B 95 ASP CYS GLU ILE ALA LEU ILE ILE PHE ASN SER SER ASN SEQRES 5 B 95 LYS LEU PHE GLN TYR ALA SER THR ASP MET ASP LYS VAL SEQRES 6 B 95 LEU LEU LYS TYR THR GLU TYR SER GLU PRO HIS GLU SER SEQRES 7 B 95 ARG THR ASN THR ASP ILE LEU GLU THR LEU LYS ARG ARG SEQRES 8 B 95 GLU HIS ARG GLY SEQRES 1 C 95 MET GLY ARG LYS LYS ILE GLN ILE THR ARG ILE MET ASP SEQRES 2 C 95 GLU ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE SEQRES 3 C 95 GLY LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS SEQRES 4 C 95 ASP CYS GLU ILE ALA LEU ILE ILE PHE ASN SER SER ASN SEQRES 5 C 95 LYS LEU PHE GLN TYR ALA SER THR ASP MET ASP LYS VAL SEQRES 6 C 95 LEU LEU LYS TYR THR GLU TYR SER GLU PRO HIS GLU SER SEQRES 7 C 95 ARG THR ASN THR ASP ILE LEU GLU THR LEU LYS ARG ARG SEQRES 8 C 95 GLU HIS ARG GLY SEQRES 1 D 95 MET GLY ARG LYS LYS ILE GLN ILE THR ARG ILE MET ASP SEQRES 2 D 95 GLU ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE SEQRES 3 D 95 GLY LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS SEQRES 4 D 95 ASP CYS GLU ILE ALA LEU ILE ILE PHE ASN SER SER ASN SEQRES 5 D 95 LYS LEU PHE GLN TYR ALA SER THR ASP MET ASP LYS VAL SEQRES 6 D 95 LEU LEU LYS TYR THR GLU TYR SER GLU PRO HIS GLU SER SEQRES 7 D 95 ARG THR ASN THR ASP ILE LEU GLU THR LEU LYS ARG ARG SEQRES 8 D 95 GLU HIS ARG GLY SEQRES 1 K 14 DA DA DC DT DA DT DT DT DA DT DA DA DG SEQRES 2 K 14 DA SEQRES 1 L 15 DT DT DC DT DT DA DT DA DA DA DT DA DG SEQRES 2 L 15 DT DT SEQRES 1 E 14 DA DA DC DT DA DT DT DT DA DT DA DA DG SEQRES 2 E 14 DA SEQRES 1 F 15 DT DT DC DT DT DA DT DA DA DA DT DA DG SEQRES 2 F 15 DT DT HET 1PG A 101 17 HET 1PG A 102 7 HET TCE F 101 16 HETNAM 1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)- HETNAM 2 1PG ETHANOL HETNAM TCE 3,3',3''-PHOSPHANETRIYLTRIPROPANOIC ACID HETSYN TCE 3-[BIS(2-CARBOXYETHYL)PHOSPHANYL]PROPANOIC ACID FORMUL 9 1PG 2(C11 H24 O6) FORMUL 11 TCE C9 H15 O6 P FORMUL 12 HOH *198(H2 O) HELIX 1 AA1 ASP A 13 ASP A 40 1 28 HELIX 2 AA2 ASP A 61 GLU A 71 1 11 HELIX 3 AA3 THR A 80 ARG A 90 1 11 HELIX 4 AA4 ASP B 13 ASP B 40 1 28 HELIX 5 AA5 ASP B 61 GLU B 71 1 11 HELIX 6 AA6 ASN B 81 GLU B 92 1 12 HELIX 7 AA7 ASP C 13 ASP C 40 1 28 HELIX 8 AA8 ASP C 61 TYR C 72 1 12 HELIX 9 AA9 THR C 80 ARG C 90 1 11 HELIX 10 AB1 ASP D 13 ASP D 40 1 28 HELIX 11 AB2 ASP D 61 GLU D 71 1 11 HELIX 12 AB3 THR D 80 LEU D 88 1 9 SHEET 1 AA1 6 GLU A 77 ARG A 79 0 SHEET 2 AA1 6 LEU B 54 ALA B 58 1 O GLN B 56 N GLU A 77 SHEET 3 AA1 6 GLU B 42 PHE B 48 -1 N LEU B 45 O TYR B 57 SHEET 4 AA1 6 GLU A 42 PHE A 48 -1 N PHE A 48 O GLU B 42 SHEET 5 AA1 6 LEU A 54 ALA A 58 -1 O TYR A 57 N LEU A 45 SHEET 6 AA1 6 GLU B 77 THR B 80 1 O ARG B 79 N GLN A 56 SHEET 1 AA2 6 GLU C 77 ARG C 79 0 SHEET 2 AA2 6 LEU D 54 ALA D 58 1 O GLN D 56 N ARG C 79 SHEET 3 AA2 6 GLU D 42 PHE D 48 -1 N LEU D 45 O TYR D 57 SHEET 4 AA2 6 GLU C 42 PHE C 48 -1 N GLU C 42 O PHE D 48 SHEET 5 AA2 6 LEU C 54 ALA C 58 -1 O PHE C 55 N ILE C 47 SHEET 6 AA2 6 GLU D 77 ARG D 79 1 O ARG D 79 N GLN C 56 SITE 1 AC1 9 GLU A 42 VAL A 65 LYS A 68 GLU A 71 SITE 2 AC1 9 TYR A 72 ASN B 52 THR D 70 GLU D 71 SITE 3 AC1 9 HOH D 103 SITE 1 AC2 8 GLU A 77 HOH A 211 THR B 22 LYS B 25 SITE 2 AC2 8 PHE B 55 HOH B 119 DA K 3 DC K 4 SITE 1 AC3 3 GLN C 18 ASN C 49 DT F 14 CRYST1 77.350 77.760 106.310 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012928 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009406 0.00000