PDB Short entry for 6C8U HEADER RNA BINDING PROTEIN 25-JAN-18 6C8U TITLE SOLUTION STRUCTURE OF MUSASHI2 RRM1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN MUSASHI HOMOLOG 2; COMPND 3 CHAIN: 1; COMPND 4 SYNONYM: MUSASHI-2; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: RRM 1 DOMAIN (UNP RESIDUES 21-111) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MSI2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA RECOGNITION MOTIF, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.XING,L.LAN,J.T.DOUGLAS,P.GAO,R.P.HANZLIK,L.XU REVDAT 5 23-MAR-22 6C8U 1 REMARK REVDAT 4 04-DEC-19 6C8U 1 REMARK REVDAT 3 06-NOV-19 6C8U 1 JRNL REMARK REVDAT 2 20-FEB-19 6C8U 1 REMARK REVDAT 1 30-JAN-19 6C8U 0 JRNL AUTH L.LAN,M.XING,M.KASHIPATHY,J.DOUGLAS,P.GAO,K.BATTAILE, JRNL AUTH 2 R.HANZLIK,S.LOVELL,L.XU JRNL TITL CRYSTAL AND SOLUTION STRUCTURES OF HUMAN ONCOPROTEIN JRNL TITL 2 MUSASHI-2 N-TERMINAL RNA RECOGNITION MOTIF 1. JRNL REF PROTEINS 2019 JRNL REFN ESSN 1097-0134 JRNL PMID 31603583 JRNL DOI 10.1002/PROT.25836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000230868. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 150 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-90% 15N] MSI2-RRM1, REMARK 210 95% H2O/5% D2O; 0.7 MM [U-95% REMARK 210 13C; U-90% 15N] MSI2-RRM1, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D HCCH-COSY; 3D REMARK 210 HNCACB; 3D HNCO; 3D HN(CO)CA; 3D REMARK 210 HNCACO; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.3, CCPNMR, NMRVIEW, REMARK 210 TOPSPIN 2.1PL6, NMRPIPE, NMRDRAW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H SER 1 29 HG1 THR 1 32 1.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN 1 19 -48.24 -137.46 REMARK 500 1 MET 1 105 135.55 57.30 REMARK 500 1 VAL 1 106 -56.37 -120.73 REMARK 500 2 HIS 1 -2 -38.42 -136.62 REMARK 500 2 PHE 1 16 -43.79 -146.71 REMARK 500 2 ASN 1 19 -56.00 -142.74 REMARK 500 2 PRO 1 56 -8.31 -59.60 REMARK 500 2 ALA 1 96 169.50 53.50 REMARK 500 3 HIS 1 -1 130.14 59.29 REMARK 500 3 PHE 1 16 55.90 -146.20 REMARK 500 3 ALA 1 20 122.78 50.98 REMARK 500 4 THR 1 5 -50.03 -127.27 REMARK 500 4 ASN 1 13 37.60 -79.49 REMARK 500 4 LEU 1 28 170.61 -58.16 REMARK 500 4 ALA 1 96 164.88 51.17 REMARK 500 4 LYS 1 110 -49.74 -134.60 REMARK 500 5 HIS 1 -2 139.60 62.79 REMARK 500 5 SER 1 4 -48.01 -133.98 REMARK 500 5 PHE 1 16 -43.47 -145.20 REMARK 500 5 THR 1 109 -34.74 -143.50 REMARK 500 6 PHE 1 16 -42.81 -142.62 REMARK 500 6 GLN 1 102 148.66 60.11 REMARK 500 8 THR 1 11 13.35 -148.54 REMARK 500 8 PHE 1 16 -6.30 -140.22 REMARK 500 8 PRO 1 56 -8.34 -57.74 REMARK 500 8 ARG 1 100 92.02 51.85 REMARK 500 9 LEU 1 28 170.88 -58.11 REMARK 500 10 THR 1 11 -28.15 -151.27 REMARK 500 10 GLU 1 12 -69.02 -95.08 REMARK 500 10 SER 1 18 -41.81 -140.60 REMARK 500 10 PRO 1 56 -8.51 -56.91 REMARK 500 10 GLN 1 102 133.43 64.49 REMARK 500 10 LYS 1 110 -45.46 -140.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 27111 RELATED DB: BMRB REMARK 900 MUSASHI HOMOLOG 2 BACKBONE RESONANCE ASSIGNMENTS REMARK 900 RELATED ID: 30398 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF MUSASHI2 RRM1 DBREF 6C8U 1 21 111 UNP Q96DH6 MSI2H_HUMAN 21 111 SEQADV 6C8U MET 1 -3 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U HIS 1 -2 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U HIS 1 -1 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U HIS 1 0 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U HIS 1 1 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U HIS 1 2 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U HIS 1 3 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U SER 1 4 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U THR 1 5 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U SER 1 6 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U VAL 1 7 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U ASP 1 8 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U LEU 1 9 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U GLY 1 10 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U THR 1 11 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U GLU 1 12 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U ASN 1 13 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U LEU 1 14 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U TYR 1 15 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U PHE 1 16 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U GLN 1 17 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U SER 1 18 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U ASN 1 19 UNP Q96DH6 EXPRESSION TAG SEQADV 6C8U ALA 1 20 UNP Q96DH6 EXPRESSION TAG SEQRES 1 1 115 MET HIS HIS HIS HIS HIS HIS SER THR SER VAL ASP LEU SEQRES 2 1 115 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA GLY LYS SEQRES 3 1 115 MET PHE ILE GLY GLY LEU SER TRP GLN THR SER PRO ASP SEQRES 4 1 115 SER LEU ARG ASP TYR PHE SER LYS PHE GLY GLU ILE ARG SEQRES 5 1 115 GLU CYS MET VAL MET ARG ASP PRO THR THR LYS ARG SER SEQRES 6 1 115 ARG GLY PHE GLY PHE VAL THR PHE ALA ASP PRO ALA SER SEQRES 7 1 115 VAL ASP LYS VAL LEU GLY GLN PRO HIS HIS GLU LEU ASP SEQRES 8 1 115 SER LYS THR ILE ASP PRO LYS VAL ALA PHE PRO ARG ARG SEQRES 9 1 115 ALA GLN PRO LYS MET VAL THR ARG THR LYS LYS HELIX 1 AA1 SER 1 33 SER 1 42 1 10 HELIX 2 AA2 ASP 1 71 GLN 1 81 1 11 SHEET 1 AA1 4 ILE 1 47 ARG 1 54 0 SHEET 2 AA1 4 SER 1 61 PHE 1 69 -1 O THR 1 68 N ARG 1 48 SHEET 3 AA1 4 LYS 1 22 GLY 1 26 -1 N ILE 1 25 O GLY 1 65 SHEET 4 AA1 4 ASP 1 92 VAL 1 95 -1 O LYS 1 94 N PHE 1 24 SHEET 1 AA2 2 GLU 1 85 LEU 1 86 0 SHEET 2 AA2 2 LYS 1 89 THR 1 90 -1 O LYS 1 89 N LEU 1 86 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000