PDB Short entry for 6C90 HEADER HYDROLASE/RNA BINDING PROTEIN 25-JAN-18 6C90 TITLE HUMAN MTR4 HELICASE IN COMPLEX WITH ZCCHC8-CTD COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOSOME RNA HELICASE MTR4,EXOSOME RNA HELICASE MTR4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-DEPENDENT RNA HELICASE DOB1,ATP-DEPENDENT RNA HELICASE COMPND 5 SKIV2L2,SUPERKILLER VIRALICIDIC ACTIVITY 2-LIKE 2,TRAMP-LIKE COMPLEX COMPND 6 HELICASE; COMPND 7 EC: 3.6.4.13,3.6.4.13; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 8; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: TRAMP-LIKE COMPLEX RNA-BINDING FACTOR ZCCHC8; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MTREX, DOB1, KIAA0052, MTR4, SKIV2L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ZCCHC8; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, NEXT, EXOSOME, NUCLEOTIDE-BINDING, ATPASE, RNA, HELICASE, KEYWDS 2 TRANSLOCASE, RNA BINDING PROTEIN, HYDROLASE-RNA BINDING PROTEIN KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.R.PUNO,C.D.LIMA REVDAT 5 04-OCT-23 6C90 1 LINK REVDAT 4 20-NOV-19 6C90 1 REMARK REVDAT 3 20-JUN-18 6C90 1 JRNL REVDAT 2 13-JUN-18 6C90 1 JRNL REVDAT 1 30-MAY-18 6C90 0 JRNL AUTH M.R.PUNO,C.D.LIMA JRNL TITL STRUCTURAL BASIS FOR MTR4-ZCCHC8 INTERACTIONS THAT STIMULATE JRNL TITL 2 THE MTR4 HELICASE IN THE NUCLEAR EXOSOME-TARGETING COMPLEX. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E5506 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29844170 JRNL DOI 10.1073/PNAS.1803530115 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 63650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3118 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 79.5904 - 6.1564 0.99 2815 160 0.1843 0.1900 REMARK 3 2 6.1564 - 4.8867 1.00 2817 134 0.1596 0.1923 REMARK 3 3 4.8867 - 4.2691 1.00 2755 160 0.1281 0.1579 REMARK 3 4 4.2691 - 3.8788 1.00 2793 121 0.1393 0.1614 REMARK 3 5 3.8788 - 3.6007 1.00 2770 139 0.1524 0.1787 REMARK 3 6 3.6007 - 3.3885 1.00 2750 158 0.1646 0.2163 REMARK 3 7 3.3885 - 3.2187 1.00 2745 176 0.1808 0.2397 REMARK 3 8 3.2187 - 3.0786 0.99 2705 161 0.2055 0.2330 REMARK 3 9 3.0786 - 2.9601 0.99 2769 156 0.2197 0.2345 REMARK 3 10 2.9601 - 2.8580 1.00 2770 130 0.2167 0.2730 REMARK 3 11 2.8580 - 2.7686 0.99 2760 125 0.2266 0.2807 REMARK 3 12 2.7686 - 2.6894 0.99 2771 119 0.2228 0.2475 REMARK 3 13 2.6894 - 2.6186 1.00 2749 141 0.2224 0.2556 REMARK 3 14 2.6186 - 2.5548 0.99 2727 141 0.2324 0.2948 REMARK 3 15 2.5548 - 2.4967 0.99 2748 135 0.2412 0.2919 REMARK 3 16 2.4967 - 2.4435 1.00 2784 128 0.2550 0.3090 REMARK 3 17 2.4435 - 2.3947 0.99 2729 150 0.2661 0.3071 REMARK 3 18 2.3947 - 2.3495 0.99 2701 145 0.2800 0.3284 REMARK 3 19 2.3495 - 2.3075 0.99 2728 148 0.2884 0.3223 REMARK 3 20 2.3075 - 2.2684 0.99 2740 138 0.2955 0.3391 REMARK 3 21 2.2684 - 2.2318 0.99 2774 139 0.3052 0.3231 REMARK 3 22 2.2318 - 2.1974 0.94 2633 114 0.3160 0.3232 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6106 REMARK 3 ANGLE : 0.508 8252 REMARK 3 CHIRALITY : 0.039 922 REMARK 3 PLANARITY : 0.003 1066 REMARK 3 DIHEDRAL : 14.150 3725 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6C90 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1000232270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63653 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 73.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XGJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM-POTASSIUM (L)-TARTRATE, REMARK 280 0.1 M BIS-TRIS PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.86300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.72600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.79450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 84.65750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.93150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 68 REMARK 465 GLY A 69 REMARK 465 ASP A 70 REMARK 465 THR A 71 REMARK 465 ASP A 72 REMARK 465 GLU A 73 REMARK 465 PRO A 74 REMARK 465 ILE A 75 REMARK 465 PHE A 76 REMARK 465 GLY A 77 REMARK 465 LYS A 78 REMARK 465 LYS A 79 REMARK 465 PRO A 80 REMARK 465 ARG A 81 REMARK 465 ILE A 82 REMARK 465 GLU A 83 REMARK 465 GLU A 84 REMARK 465 SER A 85 REMARK 465 ILE A 86 REMARK 465 THR A 87 REMARK 465 GLU A 88 REMARK 465 ASP A 89 REMARK 465 ASP A 352 REMARK 465 ALA A 353 REMARK 465 GLY A 354 REMARK 465 ASP A 355 REMARK 465 LEU A 356 REMARK 465 ALA A 357 REMARK 465 LYS A 358 REMARK 465 GLY A 359 REMARK 465 ASP A 360 REMARK 465 GLN A 361 REMARK 465 LYS A 362 REMARK 465 GLY A 363 REMARK 465 ARG A 364 REMARK 465 LYS A 365 REMARK 465 GLY A 366 REMARK 465 GLY A 367 REMARK 465 THR A 368 REMARK 465 LYS A 369 REMARK 465 SER B 656 REMARK 465 GLY B 657 REMARK 465 ASP B 658 REMARK 465 LYS B 701 REMARK 465 ASN B 702 REMARK 465 LYS B 703 REMARK 465 LYS B 704 REMARK 465 ALA B 705 REMARK 465 SER B 706 REMARK 465 GLU B 707 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 351 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 700 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 879 O HOH A 1201 1.97 REMARK 500 O HOH A 1417 O HOH A 1424 2.00 REMARK 500 OG1 THR A 221 O HOH A 1202 2.08 REMARK 500 O8 MLI A 1106 O HOH A 1203 2.12 REMARK 500 O ALA B 667 O HOH B 801 2.14 REMARK 500 OD2 ASP A 435 O HOH A 1204 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 164 -22.79 125.16 REMARK 500 GLN A 207 -56.50 65.28 REMARK 500 ASP A 208 59.28 -68.93 REMARK 500 GLU A 261 -4.96 83.09 REMARK 500 PHE A 394 32.80 -87.44 REMARK 500 ASP A 505 37.97 -85.65 REMARK 500 LYS A 507 -61.32 -127.83 REMARK 500 ASP A 884 95.94 -65.49 REMARK 500 ASP A1033 -159.11 67.44 REMARK 500 LEU B 692 66.80 -115.13 REMARK 500 ASN B 694 57.86 -117.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 573 O REMARK 620 2 LEU A 574 O 84.3 REMARK 620 3 VAL A 576 O 87.5 96.0 REMARK 620 4 ILE A 579 O 81.5 162.9 92.7 REMARK 620 5 HOH A1379 O 104.7 86.7 167.7 87.8 REMARK 620 6 HOH A1399 O 173.4 89.1 93.1 105.0 74.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA A 1108 DBREF 6C90 A 71 600 UNP P42285 SK2L2_HUMAN 71 600 DBREF 6C90 A 601 1042 UNP P42285 SK2L2_HUMAN 842 1042 DBREF 6C90 B 659 707 UNP Q6NZY4 ZCHC8_HUMAN 659 707 SEQADV 6C90 SER A 68 UNP P42285 EXPRESSION TAG SEQADV 6C90 GLY A 69 UNP P42285 EXPRESSION TAG SEQADV 6C90 ASP A 70 UNP P42285 EXPRESSION TAG SEQADV 6C90 SER A 601 UNP P42285 ALA 842 LINKER SEQADV 6C90 SER B 656 UNP Q6NZY4 EXPRESSION TAG SEQADV 6C90 GLY B 657 UNP Q6NZY4 EXPRESSION TAG SEQADV 6C90 ASP B 658 UNP Q6NZY4 EXPRESSION TAG SEQRES 1 A 734 SER GLY ASP THR ASP GLU PRO ILE PHE GLY LYS LYS PRO SEQRES 2 A 734 ARG ILE GLU GLU SER ILE THR GLU ASP LEU SER LEU ALA SEQRES 3 A 734 ASP LEU MET PRO ARG VAL LYS VAL GLN SER VAL GLU THR SEQRES 4 A 734 VAL GLU GLY CYS THR HIS GLU VAL ALA LEU PRO ALA GLU SEQRES 5 A 734 GLU ASP TYR LEU PRO LEU LYS PRO ARG VAL GLY LYS ALA SEQRES 6 A 734 ALA LYS GLU TYR PRO PHE ILE LEU ASP ALA PHE GLN ARG SEQRES 7 A 734 GLU ALA ILE GLN CYS VAL ASP ASN ASN GLN SER VAL LEU SEQRES 8 A 734 VAL SER ALA HIS THR SER ALA GLY LYS THR VAL CYS ALA SEQRES 9 A 734 GLU TYR ALA ILE ALA LEU ALA LEU ARG GLU LYS GLN ARG SEQRES 10 A 734 VAL ILE PHE THR SER PRO ILE LYS ALA LEU SER ASN GLN SEQRES 11 A 734 LYS TYR ARG GLU MET TYR GLU GLU PHE GLN ASP VAL GLY SEQRES 12 A 734 LEU MET THR GLY ASP VAL THR ILE ASN PRO THR ALA SER SEQRES 13 A 734 CYS LEU VAL MET THR THR GLU ILE LEU ARG SER MET LEU SEQRES 14 A 734 TYR ARG GLY SER GLU VAL MET ARG GLU VAL ALA TRP VAL SEQRES 15 A 734 ILE PHE ASP GLU ILE HIS TYR MET ARG ASP SER GLU ARG SEQRES 16 A 734 GLY VAL VAL TRP GLU GLU THR ILE ILE LEU LEU PRO ASP SEQRES 17 A 734 ASN VAL HIS TYR VAL PHE LEU SER ALA THR ILE PRO ASN SEQRES 18 A 734 ALA ARG GLN PHE ALA GLU TRP ILE CYS HIS LEU HIS LYS SEQRES 19 A 734 GLN PRO CYS HIS VAL ILE TYR THR ASP TYR ARG PRO THR SEQRES 20 A 734 PRO LEU GLN HIS TYR ILE PHE PRO ALA GLY GLY ASP GLY SEQRES 21 A 734 LEU HIS LEU VAL VAL ASP GLU ASN GLY ASP PHE ARG GLU SEQRES 22 A 734 ASP ASN PHE ASN THR ALA MET GLN VAL LEU ARG ASP ALA SEQRES 23 A 734 GLY ASP LEU ALA LYS GLY ASP GLN LYS GLY ARG LYS GLY SEQRES 24 A 734 GLY THR LYS GLY PRO SER ASN VAL PHE LYS ILE VAL LYS SEQRES 25 A 734 MET ILE MET GLU ARG ASN PHE GLN PRO VAL ILE ILE PHE SEQRES 26 A 734 SER PHE SER LYS LYS ASP CYS GLU ALA TYR ALA LEU GLN SEQRES 27 A 734 MET THR LYS LEU ASP PHE ASN THR ASP GLU GLU LYS LYS SEQRES 28 A 734 MET VAL GLU GLU VAL PHE SER ASN ALA ILE ASP CYS LEU SEQRES 29 A 734 SER ASP GLU ASP LYS LYS LEU PRO GLN VAL GLU HIS VAL SEQRES 30 A 734 LEU PRO LEU LEU LYS ARG GLY ILE GLY ILE HIS HIS GLY SEQRES 31 A 734 GLY LEU LEU PRO ILE LEU LYS GLU THR ILE GLU ILE LEU SEQRES 32 A 734 PHE SER GLU GLY LEU ILE LYS ALA LEU PHE ALA THR GLU SEQRES 33 A 734 THR PHE ALA MET GLY ILE ASN MET PRO ALA ARG THR VAL SEQRES 34 A 734 LEU PHE THR ASN ALA ARG LYS PHE ASP GLY LYS ASP PHE SEQRES 35 A 734 ARG TRP ILE SER SER GLY GLU TYR ILE GLN MET SER GLY SEQRES 36 A 734 ARG ALA GLY ARG ARG GLY MET ASP ASP ARG GLY ILE VAL SEQRES 37 A 734 ILE LEU MET VAL ASP GLU LYS MET SER PRO THR ILE GLY SEQRES 38 A 734 LYS GLN LEU LEU LYS GLY SER ALA ASP PRO LEU ASN SER SEQRES 39 A 734 ALA PHE HIS LEU THR TYR ASN MET VAL LEU ASN LEU LEU SEQRES 40 A 734 ARG VAL GLU GLU ILE ASN PRO GLU TYR MET LEU GLU LYS SEQRES 41 A 734 SER PHE TYR GLN PHE GLN HIS TYR ARG ALA ILE PRO GLY SEQRES 42 A 734 SER ARG THR VAL LEU GLN MET ASP GLU LEU LYS CYS ARG SEQRES 43 A 734 LYS ARG VAL LEU ARG ARG LEU GLY PHE ALA THR SER SER SEQRES 44 A 734 ASP VAL ILE GLU MET LYS GLY ARG VAL ALA CYS GLU ILE SEQRES 45 A 734 SER SER ALA ASP GLU LEU LEU LEU THR GLU MET MET PHE SEQRES 46 A 734 ASN GLY LEU PHE ASN ASP LEU SER ALA GLU GLN ALA THR SEQRES 47 A 734 ALA LEU LEU SER CYS PHE VAL PHE GLN GLU ASN SER SER SEQRES 48 A 734 GLU MET PRO LYS LEU THR GLU GLN LEU ALA GLY PRO LEU SEQRES 49 A 734 ARG GLN MET GLN GLU CYS ALA LYS ARG ILE ALA LYS VAL SEQRES 50 A 734 SER ALA GLU ALA LYS LEU GLU ILE ASP GLU GLU THR TYR SEQRES 51 A 734 LEU SER SER PHE LYS PRO HIS LEU MET ASP VAL VAL TYR SEQRES 52 A 734 THR TRP ALA THR GLY ALA THR PHE ALA HIS ILE CYS LYS SEQRES 53 A 734 MET THR ASP VAL PHE GLU GLY SER ILE ILE ARG CYS MET SEQRES 54 A 734 ARG ARG LEU GLU GLU LEU LEU ARG GLN MET CYS GLN ALA SEQRES 55 A 734 ALA LYS ALA ILE GLY ASN THR GLU LEU GLU ASN LYS PHE SEQRES 56 A 734 ALA GLU GLY ILE THR LYS ILE LYS ARG ASP ILE VAL PHE SEQRES 57 A 734 ALA ALA SER LEU TYR LEU SEQRES 1 B 52 SER GLY ASP PRO ILE PRO ASP MET SER LYS PHE ALA THR SEQRES 2 B 52 GLY ILE THR PRO PHE GLU PHE GLU ASN MET ALA GLU SER SEQRES 3 B 52 THR GLY MET TYR LEU ARG ILE ARG SER LEU LEU LYS ASN SEQRES 4 B 52 SER PRO ARG ASN GLN GLN LYS ASN LYS LYS ALA SER GLU HET ADP A1101 27 HET MG A1102 1 HET MG A1103 1 HET MLI A1104 7 HET MLI A1105 7 HET MLI A1106 7 HET MLI A1107 7 HET TLA A1108 10 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM MLI MALONATE ION HETNAM TLA L(+)-TARTARIC ACID FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG 2(MG 2+) FORMUL 6 MLI 4(C3 H2 O4 2-) FORMUL 10 TLA C4 H6 O6 FORMUL 11 HOH *238(H2 O) HELIX 1 AA1 ASP A 141 ASN A 153 1 13 HELIX 2 AA2 LYS A 167 GLU A 181 1 15 HELIX 3 AA3 ILE A 191 GLN A 207 1 17 HELIX 4 AA4 THR A 229 ARG A 238 1 10 HELIX 5 AA5 SER A 240 ARG A 244 5 5 HELIX 6 AA6 GLU A 253 MET A 257 5 5 HELIX 7 AA7 ARG A 262 LEU A 273 1 12 HELIX 8 AA8 ASN A 288 LYS A 301 1 14 HELIX 9 AA9 ARG A 339 VAL A 349 1 11 HELIX 10 AB1 PRO A 371 ARG A 384 1 14 HELIX 11 AB2 SER A 395 MET A 406 1 12 HELIX 12 AB3 THR A 407 LEU A 409 5 3 HELIX 13 AB4 THR A 413 ASP A 429 1 17 HELIX 14 AB5 SER A 432 LYS A 437 1 6 HELIX 15 AB6 LEU A 438 ARG A 450 1 13 HELIX 16 AB7 LEU A 460 GLU A 473 1 14 HELIX 17 AB8 GLU A 483 GLY A 488 5 6 HELIX 18 AB9 SER A 513 GLY A 522 1 10 HELIX 19 AC1 SER A 544 GLY A 554 1 11 HELIX 20 AC2 THR A 566 VAL A 576 1 11 HELIX 21 AC3 ASN A 580 SER A 588 1 9 HELIX 22 AC4 SER A 588 ILE A 598 1 11 HELIX 23 AC5 GLN A 847 LEU A 861 1 15 HELIX 24 AC6 GLU A 871 CYS A 878 1 8 HELIX 25 AC7 ASP A 884 GLY A 895 1 12 HELIX 26 AC8 SER A 901 SER A 910 1 10 HELIX 27 AC9 CYS A 911 VAL A 913 5 3 HELIX 28 AD1 THR A 925 ALA A 949 1 25 HELIX 29 AD2 ASP A 954 SER A 961 1 8 HELIX 30 AD3 LEU A 966 THR A 975 1 10 HELIX 31 AD4 THR A 978 LYS A 984 1 7 HELIX 32 AD5 PHE A 989 ILE A 1014 1 26 HELIX 33 AD6 ASN A 1016 LYS A 1031 1 16 HELIX 34 AD7 ARG A 1032 ALA A 1037 5 6 HELIX 35 AD8 ASP B 662 THR B 668 1 7 HELIX 36 AD9 GLY B 683 LEU B 691 1 9 HELIX 37 AE1 SER B 695 GLN B 700 1 6 SHEET 1 AA110 VAL A 99 VAL A 104 0 SHEET 2 AA110 THR A 111 PRO A 117 -1 O VAL A 114 N GLN A 102 SHEET 3 AA110 CYS A 304 TYR A 308 -1 O TYR A 308 N THR A 111 SHEET 4 AA110 SER A 156 SER A 160 1 N LEU A 158 O ILE A 307 SHEET 5 AA110 HIS A 278 SER A 283 1 O PHE A 281 N VAL A 159 SHEET 6 AA110 VAL A 246 PHE A 251 1 N PHE A 251 O LEU A 282 SHEET 7 AA110 ARG A 184 SER A 189 1 N ILE A 186 O ILE A 250 SHEET 8 AA110 CYS A 224 THR A 228 1 O LEU A 225 N VAL A 185 SHEET 9 AA110 VAL A 209 MET A 212 1 N GLY A 210 O CYS A 224 SHEET 10 AA110 THR A 217 ILE A 218 -1 O ILE A 218 N LEU A 211 SHEET 1 AA2 7 HIS A 329 VAL A 332 0 SHEET 2 AA2 7 LEU A 316 PRO A 322 -1 N HIS A 318 O VAL A 331 SHEET 3 AA2 7 GLY A 533 VAL A 539 1 O VAL A 535 N TYR A 319 SHEET 4 AA2 7 THR A 495 PHE A 498 1 N PHE A 498 O ILE A 536 SHEET 5 AA2 7 VAL A 389 PHE A 392 1 N ILE A 390 O LEU A 497 SHEET 6 AA2 7 ALA A 478 ALA A 481 1 O LEU A 479 N ILE A 391 SHEET 7 AA2 7 ILE A 452 HIS A 455 1 N GLY A 453 O ALA A 478 SHEET 1 AA3 2 ARG A 502 PHE A 504 0 SHEET 2 AA3 2 PHE A 509 TRP A 511 -1 O ARG A 510 N LYS A 503 LINK O LEU A 573 MG MG A1103 1555 1555 2.35 LINK O LEU A 574 MG MG A1103 1555 1555 2.59 LINK O VAL A 576 MG MG A1103 1555 1555 2.17 LINK O ILE A 579 MG MG A1103 1555 1555 2.23 LINK MG MG A1103 O HOH A1379 1555 1555 2.30 LINK MG MG A1103 O HOH A1399 1555 1555 2.36 CISPEP 1 GLN A 387 PRO A 388 0 0.66 SITE 1 AC1 12 PHE A 138 ILE A 139 ASP A 141 GLN A 144 SITE 2 AC1 12 THR A 163 SER A 164 GLY A 166 LYS A 167 SITE 3 AC1 12 THR A 168 ASN A 490 ARG A 527 HOH A1295 SITE 1 AC2 2 TLA A1108 HOH A1347 SITE 1 AC3 6 LEU A 573 LEU A 574 VAL A 576 ILE A 579 SITE 2 AC3 6 HOH A1379 HOH A1399 SITE 1 AC4 5 ARG A 854 GLU A 952 HOH A1221 HOH A1230 SITE 2 AC4 5 HOH A1287 SITE 1 AC5 6 ILE A 191 LYS A 192 ALA A 193 ARG A 262 SITE 2 AC5 6 ARG A 999 HOH A1223 SITE 1 AC6 6 LYS A 396 HIS A 456 GLY A 457 THR A 482 SITE 2 AC6 6 THR A 484 HOH A1203 SITE 1 AC7 3 LEU A 123 LYS A 126 HOH A1244 SITE 1 AC8 4 GLU A 113 ILE A 286 PRO A 287 MG A1102 CRYST1 147.635 147.635 101.589 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006773 0.003911 0.000000 0.00000 SCALE2 0.000000 0.007821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009844 0.00000