PDB Short entry for 6CDR HEADER TRANSCRIPTION 09-FEB-18 6CDR TITLE HUMAN CTBP1 (28-378) COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TERMINAL-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 28-379; COMPND 5 SYNONYM: CTBP1; COMPND 6 EC: 1.1.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTBP1, CTBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CTBP, NADH, CANCER TARGET, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.E.ROYER,A.G.BELLESIS REVDAT 5 04-OCT-23 6CDR 1 REMARK REVDAT 4 01-JAN-20 6CDR 1 REMARK REVDAT 3 20-FEB-19 6CDR 1 REMARK REVDAT 2 20-JUN-18 6CDR 1 JRNL REVDAT 1 09-MAY-18 6CDR 0 JRNL AUTH A.G.BELLESIS,A.M.JECROIS,J.A.HAYES,C.A.SCHIFFER,W.E.ROYER JRNL TITL ASSEMBLY OF HUMAN C-TERMINAL BINDING PROTEIN (CTBP) INTO JRNL TITL 2 TETRAMERS. JRNL REF J. BIOL. CHEM. V. 293 9101 2018 JRNL REFN ESSN 1083-351X JRNL PMID 29700119 JRNL DOI 10.1074/JBC.RA118.002514 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 14765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.2611 - 4.1012 0.98 3145 166 0.1953 0.2240 REMARK 3 2 4.1012 - 3.2559 0.73 2198 118 0.2448 0.2824 REMARK 3 3 3.2559 - 2.8445 0.97 2883 150 0.2603 0.2965 REMARK 3 4 2.8445 - 2.5845 0.99 2901 153 0.2920 0.2608 REMARK 3 5 2.5845 - 2.3993 1.00 2898 153 0.2966 0.3403 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2684 REMARK 3 ANGLE : 0.603 3631 REMARK 3 CHIRALITY : 0.042 419 REMARK 3 PLANARITY : 0.003 468 REMARK 3 DIHEDRAL : 16.411 1615 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CDR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232592. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15819 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.399 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4U6Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 80 MM MAGNESIUM REMARK 280 CHLORIDE, 4% PEG400, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.74433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 109.48867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.74433 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 109.48867 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.74433 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 109.48867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.74433 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 109.48867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 178.43600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 154.53011 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 154.53011 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 178.43600 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 178.43600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 LEU A 20 REMARK 465 VAL A 21 REMARK 465 PRO A 22 REMARK 465 ARG A 23 REMARK 465 GLY A 24 REMARK 465 ALA A 358 REMARK 465 ALA A 359 REMARK 465 THR A 360 REMARK 465 HIS A 361 REMARK 465 TRP A 362 REMARK 465 ALA A 363 REMARK 465 SER A 364 REMARK 465 MET A 365 REMARK 465 ASP A 366 REMARK 465 PRO A 367 REMARK 465 ALA A 368 REMARK 465 VAL A 369 REMARK 465 VAL A 370 REMARK 465 HIS A 371 REMARK 465 PRO A 372 REMARK 465 GLU A 373 REMARK 465 LEU A 374 REMARK 465 ASN A 375 REMARK 465 GLY A 376 REMARK 465 ALA A 377 REMARK 465 ALA A 378 REMARK 465 TYR A 379 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 277 OE1 GLU A 281 1.58 REMARK 500 O1 EDO A 407 O HOH A 501 2.05 REMARK 500 NH2 ARG A 333 O HOH A 502 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 47 NH1 ARG A 336 10775 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 51.64 -101.24 REMARK 500 TYR A 76 -136.34 -97.48 REMARK 500 ASP A 106 93.78 -69.41 REMARK 500 LEU A 182 59.19 -104.31 REMARK 500 HIS A 236 31.91 -145.22 REMARK 500 ASN A 243 18.42 -142.01 REMARK 500 ALA A 265 -86.56 -94.63 REMARK 500 ASN A 352 31.43 -144.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 DBREF 6CDR A 28 379 UNP Q13363 CTBP1_HUMAN 28 379 SEQADV 6CDR MET A 7 UNP Q13363 EXPRESSION TAG SEQADV 6CDR GLY A 8 UNP Q13363 EXPRESSION TAG SEQADV 6CDR SER A 9 UNP Q13363 EXPRESSION TAG SEQADV 6CDR SER A 10 UNP Q13363 EXPRESSION TAG SEQADV 6CDR HIS A 11 UNP Q13363 EXPRESSION TAG SEQADV 6CDR HIS A 12 UNP Q13363 EXPRESSION TAG SEQADV 6CDR HIS A 13 UNP Q13363 EXPRESSION TAG SEQADV 6CDR HIS A 14 UNP Q13363 EXPRESSION TAG SEQADV 6CDR HIS A 15 UNP Q13363 EXPRESSION TAG SEQADV 6CDR HIS A 16 UNP Q13363 EXPRESSION TAG SEQADV 6CDR SER A 17 UNP Q13363 EXPRESSION TAG SEQADV 6CDR SER A 18 UNP Q13363 EXPRESSION TAG SEQADV 6CDR GLY A 19 UNP Q13363 EXPRESSION TAG SEQADV 6CDR LEU A 20 UNP Q13363 EXPRESSION TAG SEQADV 6CDR VAL A 21 UNP Q13363 EXPRESSION TAG SEQADV 6CDR PRO A 22 UNP Q13363 EXPRESSION TAG SEQADV 6CDR ARG A 23 UNP Q13363 EXPRESSION TAG SEQADV 6CDR GLY A 24 UNP Q13363 EXPRESSION TAG SEQADV 6CDR SER A 25 UNP Q13363 EXPRESSION TAG SEQADV 6CDR HIS A 26 UNP Q13363 EXPRESSION TAG SEQADV 6CDR MET A 27 UNP Q13363 EXPRESSION TAG SEQADV 6CDR VAL A 123 UNP Q13363 ALA 123 ENGINEERED MUTATION SEQRES 1 A 373 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 373 LEU VAL PRO ARG GLY SER HIS MET PRO LEU VAL ALA LEU SEQRES 3 A 373 LEU ASP GLY ARG ASP CYS THR VAL GLU MET PRO ILE LEU SEQRES 4 A 373 LYS ASP VAL ALA THR VAL ALA PHE CYS ASP ALA GLN SER SEQRES 5 A 373 THR GLN GLU ILE HIS GLU LYS VAL LEU ASN GLU ALA VAL SEQRES 6 A 373 GLY ALA LEU MET TYR HIS THR ILE THR LEU THR ARG GLU SEQRES 7 A 373 ASP LEU GLU LYS PHE LYS ALA LEU ARG ILE ILE VAL ARG SEQRES 8 A 373 ILE GLY SER GLY PHE ASP ASN ILE ASP ILE LYS SER ALA SEQRES 9 A 373 GLY ASP LEU GLY ILE ALA VAL CYS ASN VAL PRO ALA VAL SEQRES 10 A 373 SER VAL GLU GLU THR ALA ASP SER THR LEU CYS HIS ILE SEQRES 11 A 373 LEU ASN LEU TYR ARG ARG ALA THR TRP LEU HIS GLN ALA SEQRES 12 A 373 LEU ARG GLU GLY THR ARG VAL GLN SER VAL GLU GLN ILE SEQRES 13 A 373 ARG GLU VAL ALA SER GLY ALA ALA ARG ILE ARG GLY GLU SEQRES 14 A 373 THR LEU GLY ILE ILE GLY LEU GLY ARG VAL GLY GLN ALA SEQRES 15 A 373 VAL ALA LEU ARG ALA LYS ALA PHE GLY PHE ASN VAL LEU SEQRES 16 A 373 PHE TYR ASP PRO TYR LEU SER ASP GLY VAL GLU ARG ALA SEQRES 17 A 373 LEU GLY LEU GLN ARG VAL SER THR LEU GLN ASP LEU LEU SEQRES 18 A 373 PHE HIS SER ASP CYS VAL THR LEU HIS CYS GLY LEU ASN SEQRES 19 A 373 GLU HIS ASN HIS HIS LEU ILE ASN ASP PHE THR VAL LYS SEQRES 20 A 373 GLN MET ARG GLN GLY ALA PHE LEU VAL ASN THR ALA ARG SEQRES 21 A 373 GLY GLY LEU VAL ASP GLU LYS ALA LEU ALA GLN ALA LEU SEQRES 22 A 373 LYS GLU GLY ARG ILE ARG GLY ALA ALA LEU ASP VAL HIS SEQRES 23 A 373 GLU SER GLU PRO PHE SER PHE SER GLN GLY PRO LEU LYS SEQRES 24 A 373 ASP ALA PRO ASN LEU ILE CYS THR PRO HIS ALA ALA TRP SEQRES 25 A 373 TYR SER GLU GLN ALA SER ILE GLU MET ARG GLU GLU ALA SEQRES 26 A 373 ALA ARG GLU ILE ARG ARG ALA ILE THR GLY ARG ILE PRO SEQRES 27 A 373 ASP SER LEU LYS ASN CYS VAL ASN LYS ASP HIS LEU THR SEQRES 28 A 373 ALA ALA THR HIS TRP ALA SER MET ASP PRO ALA VAL VAL SEQRES 29 A 373 HIS PRO GLU LEU ASN GLY ALA ALA TYR HET NAI A 401 71 HET CL A 402 1 HET CL A 403 1 HET EDO A 404 10 HET EDO A 405 10 HET EDO A 406 10 HET EDO A 407 10 HET FMT A 408 5 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETSYN NAI NADH HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAI C21 H29 N7 O14 P2 FORMUL 3 CL 2(CL 1-) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 9 FMT C H2 O2 FORMUL 10 HOH *101(H2 O) HELIX 1 AA1 GLU A 41 LYS A 46 1 6 HELIX 2 AA2 SER A 58 ILE A 62 5 5 HELIX 3 AA3 HIS A 63 GLU A 69 1 7 HELIX 4 AA4 THR A 82 LYS A 88 1 7 HELIX 5 AA5 ASP A 106 LEU A 113 1 8 HELIX 6 AA6 SER A 124 ARG A 142 1 19 HELIX 7 AA7 ARG A 142 GLU A 152 1 11 HELIX 8 AA8 SER A 158 ALA A 166 1 9 HELIX 9 AA9 GLY A 183 PHE A 196 1 14 HELIX 10 AB1 GLY A 210 LEU A 215 1 6 HELIX 11 AB2 THR A 222 SER A 230 1 9 HELIX 12 AB3 ASN A 248 LYS A 253 1 6 HELIX 13 AB4 ARG A 266 VAL A 270 5 5 HELIX 14 AB5 ASP A 271 GLU A 281 1 11 HELIX 15 AB6 SER A 320 GLY A 341 1 22 SHEET 1 AA1 5 THR A 50 PHE A 53 0 SHEET 2 AA1 5 LEU A 29 LEU A 32 1 N VAL A 30 O THR A 50 SHEET 3 AA1 5 ALA A 70 MET A 75 1 O LEU A 74 N ALA A 31 SHEET 4 AA1 5 ILE A 94 ARG A 97 1 O VAL A 96 N ALA A 73 SHEET 5 AA1 5 ALA A 116 CYS A 118 1 O CYS A 118 N ARG A 97 SHEET 1 AA2 7 GLN A 218 ARG A 219 0 SHEET 2 AA2 7 ASN A 199 TYR A 203 1 N VAL A 200 O GLN A 218 SHEET 3 AA2 7 THR A 176 ILE A 180 1 N ILE A 179 O TYR A 203 SHEET 4 AA2 7 CYS A 232 LEU A 235 1 O CYS A 232 N GLY A 178 SHEET 5 AA2 7 ALA A 259 ASN A 263 1 O PHE A 260 N VAL A 233 SHEET 6 AA2 7 ILE A 284 LEU A 289 1 O ALA A 288 N LEU A 261 SHEET 7 AA2 7 LEU A 310 CYS A 312 1 O ILE A 311 N ALA A 287 CISPEP 1 GLU A 295 PRO A 296 0 3.89 CISPEP 2 ILE A 343 PRO A 344 0 -3.82 SITE 1 AC1 32 SER A 100 GLY A 101 THR A 128 ILE A 180 SITE 2 AC1 32 GLY A 181 GLY A 183 ARG A 184 VAL A 185 SITE 3 AC1 32 TYR A 203 ASP A 204 PRO A 205 TYR A 206 SITE 4 AC1 32 HIS A 236 CYS A 237 GLY A 238 ASN A 240 SITE 5 AC1 32 ASN A 243 THR A 264 ALA A 265 ARG A 266 SITE 6 AC1 32 ASP A 290 VAL A 291 HIS A 315 ALA A 317 SITE 7 AC1 32 TRP A 318 CL A 402 EDO A 405 HOH A 514 SITE 8 AC1 32 HOH A 538 HOH A 555 HOH A 565 HOH A 568 SITE 1 AC2 3 ARG A 266 HIS A 315 NAI A 401 SITE 1 AC3 1 GLN A 218 SITE 1 AC4 4 HIS A 77 ILE A 98 TRP A 318 MET A 327 SITE 1 AC5 4 GLY A 238 NAI A 401 HOH A 510 HOH A 512 SITE 1 AC6 6 TYR A 140 ALA A 170 GLU A 175 ASP A 231 SITE 2 AC6 6 PHE A 260 HOH A 564 SITE 1 AC7 3 ASP A 103 LEU A 239 HOH A 501 CRYST1 89.218 89.218 164.233 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011209 0.006471 0.000000 0.00000 SCALE2 0.000000 0.012942 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006089 0.00000