PDB Short entry for 6CJH HEADER TRANSFERASE/TRANSFERASE INHIBITOR 26-FEB-18 6CJH TITLE CO-CRYSTAL STRUCTURE OF MNK2 IN COMPLEX WITH AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAP KINASE-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAP KINASE SIGNAL-INTEGRATING KINASE 2,MNK2; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MKNK2, GPRK7, MNK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS MNK2 INHIBITOR, TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.HAN REVDAT 1 09-MAY-18 6CJH 0 JRNL AUTH S.H.REICH,P.A.SPRENGELER,G.G.CHIANG,J.R.APPLEMAN,J.CHEN, JRNL AUTH 2 J.CLARINE,B.EAM,J.T.ERNST,Q.HAN,V.K.GOEL,E.Z.R.HAN,V.HUANG, JRNL AUTH 3 I.N.J.HUNG,A.JEMISON,K.A.JESSEN,J.MOLTER,D.MURPHY,M.NEAL, JRNL AUTH 4 G.S.PARKER,M.SHAGHAFI,S.SPERRY,J.STAUNTON,C.R.STUMPF, JRNL AUTH 5 P.A.THOMPSON,C.TRAN,S.E.WEBBER,C.J.WEGERSKI,H.ZHENG, JRNL AUTH 6 K.R.WEBSTER JRNL TITL STRUCTURE-BASED DESIGN OF PYRIDONE-AMINAL EFT508 TARGETING JRNL TITL 2 DYSREGULATED TRANSLATION BY SELECTIVE MITOGEN-ACTIVATED JRNL TITL 3 PROTEIN KINASE INTERACTING KINASES 1 AND 2 (MNK1/2) JRNL TITL 4 INHIBITION. JRNL REF J. MED. CHEM. V. 61 3516 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29526098 JRNL DOI 10.1021/ACS.JMEDCHEM.7B01795 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 5430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 259 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 354 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 10 REMARK 3 BIN FREE R VALUE : 0.1890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2154 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.97000 REMARK 3 B22 (A**2) : -1.97000 REMARK 3 B33 (A**2) : 2.95000 REMARK 3 B12 (A**2) : -0.98000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.604 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.434 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.571 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2224 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 13 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2999 ; 1.680 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 26 ; 2.131 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ; 8.651 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;42.397 ;24.054 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 380 ;22.242 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;22.050 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 318 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1704 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 13 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 6CJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1000232869. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11166 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-30% (W/V) POLYACRYLIC ACID 5100, 1 REMARK 280 -5% PEG 400, AND 50 MM HEPES (PH 7.5), VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 300.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.46000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.23000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.23000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.46000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 229 REMARK 465 GLY A 230 REMARK 465 SER A 231 REMARK 465 GLY A 232 REMARK 465 ILE A 233 REMARK 465 LYS A 234 REMARK 465 LEU A 235 REMARK 465 ASN A 236 REMARK 465 GLY A 237 REMARK 465 ASP A 238 REMARK 465 CYS A 239 REMARK 465 SER A 240 REMARK 465 PRO A 241 REMARK 465 ILE A 242 REMARK 465 SER A 243 REMARK 465 THR A 244 REMARK 465 PRO A 245 REMARK 465 GLU A 246 REMARK 465 LEU A 247 REMARK 465 LEU A 248 REMARK 465 THR A 249 REMARK 465 PRO A 250 REMARK 465 CYS A 251 REMARK 465 GLY A 300 REMARK 465 SER A 301 REMARK 465 ASP A 302 REMARK 465 TRP A 305 REMARK 465 ASP A 306 REMARK 465 ARG A 307 REMARK 465 GLY A 308 REMARK 465 GLU A 309 REMARK 465 ALA A 372 REMARK 465 PRO A 373 REMARK 465 GLU A 374 REMARK 465 ASN A 375 REMARK 465 THR A 376 REMARK 465 LEU A 377 REMARK 465 PRO A 378 REMARK 465 THR A 379 REMARK 465 PRO A 380 REMARK 465 MET A 381 REMARK 465 VAL A 382 REMARK 465 LEU A 383 REMARK 465 GLN A 384 REMARK 465 ARG A 385 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 ALA A 94 CB REMARK 470 HIS A 95 ND1 CD2 CE1 NE2 REMARK 470 ILE A 122 CD1 REMARK 470 GLY A 370 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 279 CE2 TRP A 279 CD2 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 72 54.66 -143.39 REMARK 500 PHE A 75 -59.42 -124.91 REMARK 500 VAL A 82 -36.99 -139.67 REMARK 500 GLU A 92 77.19 -68.67 REMARK 500 ALA A 94 5.56 -65.03 REMARK 500 HIS A 95 -42.26 -175.68 REMARK 500 SER A 107 5.27 58.23 REMARK 500 PRO A 119 -163.03 -100.19 REMARK 500 HIS A 121 -61.88 52.90 REMARK 500 ILE A 122 128.13 -32.77 REMARK 500 ARG A 123 -113.82 170.79 REMARK 500 SER A 124 5.98 -53.82 REMARK 500 ILE A 146 -68.13 -109.75 REMARK 500 GLU A 152 107.75 -45.17 REMARK 500 ASP A 153 -28.63 85.69 REMARK 500 ARG A 175 -45.48 46.92 REMARK 500 ARG A 204 -73.24 70.72 REMARK 500 ASP A 205 32.69 -72.23 REMARK 500 ASN A 217 10.19 -143.47 REMARK 500 SER A 253 8.61 -62.49 REMARK 500 GLU A 267 -75.04 -44.52 REMARK 500 CYS A 311 129.41 -38.19 REMARK 500 ALA A 313 -115.00 45.98 REMARK 500 ASN A 316 -58.57 -22.83 REMARK 500 GLU A 324 -70.10 -49.90 REMARK 500 LYS A 326 96.00 -68.77 REMARK 500 PHE A 329 77.12 -119.99 REMARK 500 ALA A 335 -77.89 11.29 REMARK 500 ALA A 341 -74.84 -67.54 REMARK 500 LEU A 349 58.21 -67.02 REMARK 500 GLN A 355 -91.83 -73.23 REMARK 500 ARG A 356 128.28 -0.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 117 GLN A 118 -144.08 REMARK 500 ILE A 122 ARG A 123 145.39 REMARK 500 PRO A 312 ALA A 313 46.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 311 SG REMARK 620 2 CYS A 314 SG 45.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ET8 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CJ5 RELATED DB: PDB DBREF 6CJH A 72 385 UNP Q9HBH9 MKNK2_HUMAN 72 385 SEQADV 6CJH GLY A 70 UNP Q9HBH9 EXPRESSION TAG SEQADV 6CJH SER A 71 UNP Q9HBH9 EXPRESSION TAG SEQADV 6CJH GLY A 228 UNP Q9HBH9 ASP 228 ENGINEERED MUTATION SEQRES 1 A 316 GLY SER THR ASP SER PHE SER GLY ARG PHE GLU ASP VAL SEQRES 2 A 316 TYR GLN LEU GLN GLU ASP VAL LEU GLY GLU GLY ALA HIS SEQRES 3 A 316 ALA ARG VAL GLN THR CYS ILE ASN LEU ILE THR SER GLN SEQRES 4 A 316 GLU TYR ALA VAL LYS ILE ILE GLU LYS GLN PRO GLY HIS SEQRES 5 A 316 ILE ARG SER ARG VAL PHE ARG GLU VAL GLU MET LEU TYR SEQRES 6 A 316 GLN CYS GLN GLY HIS ARG ASN VAL LEU GLU LEU ILE GLU SEQRES 7 A 316 PHE PHE GLU GLU GLU ASP ARG PHE TYR LEU VAL PHE GLU SEQRES 8 A 316 LYS MET ARG GLY GLY SER ILE LEU SER HIS ILE HIS LYS SEQRES 9 A 316 ARG ARG HIS PHE ASN GLU LEU GLU ALA SER VAL VAL VAL SEQRES 10 A 316 GLN ASP VAL ALA SER ALA LEU ASP PHE LEU HIS ASN LYS SEQRES 11 A 316 GLY ILE ALA HIS ARG ASP LEU LYS PRO GLU ASN ILE LEU SEQRES 12 A 316 CYS GLU HIS PRO ASN GLN VAL SER PRO VAL LYS ILE CYS SEQRES 13 A 316 ASP PHE GLY LEU GLY SER GLY ILE LYS LEU ASN GLY ASP SEQRES 14 A 316 CYS SER PRO ILE SER THR PRO GLU LEU LEU THR PRO CYS SEQRES 15 A 316 GLY SER ALA GLU TYR MET ALA PRO GLU VAL VAL GLU ALA SEQRES 16 A 316 PHE SER GLU GLU ALA SER ILE TYR ASP LYS ARG CYS ASP SEQRES 17 A 316 LEU TRP SER LEU GLY VAL ILE LEU TYR ILE LEU LEU SER SEQRES 18 A 316 GLY TYR PRO PRO PHE VAL GLY ARG CYS GLY SER ASP CYS SEQRES 19 A 316 GLY TRP ASP ARG GLY GLU ALA CYS PRO ALA CYS GLN ASN SEQRES 20 A 316 MET LEU PHE GLU SER ILE GLN GLU GLY LYS TYR GLU PHE SEQRES 21 A 316 PRO ASP LYS ASP TRP ALA HIS ILE SER CYS ALA ALA LYS SEQRES 22 A 316 ASP LEU ILE SER LYS LEU LEU VAL ARG ASP ALA LYS GLN SEQRES 23 A 316 ARG LEU SER ALA ALA GLN VAL LEU GLN HIS PRO TRP VAL SEQRES 24 A 316 GLN GLY CYS ALA PRO GLU ASN THR LEU PRO THR PRO MET SEQRES 25 A 316 VAL LEU GLN ARG HET ZN A 401 1 HET ET8 A 402 21 HETNAM ZN ZINC ION HETNAM ET8 3-PHENYL-5-(PYRIDIN-4-YL)-1H-INDAZOLE FORMUL 2 ZN ZN 2+ FORMUL 3 ET8 C18 H13 N3 HELIX 1 AA1 ARG A 123 GLN A 137 1 15 HELIX 2 AA2 SER A 166 ARG A 175 1 10 HELIX 3 AA3 ASN A 178 LYS A 199 1 22 HELIX 4 AA4 LYS A 207 GLU A 209 5 3 HELIX 5 AA5 ALA A 258 PHE A 265 1 8 HELIX 6 AA6 SER A 266 ASP A 273 1 8 HELIX 7 AA7 ARG A 275 GLY A 291 1 17 HELIX 8 AA8 CYS A 311 GLY A 325 1 15 HELIX 9 AA9 ASP A 333 ILE A 337 5 5 HELIX 10 AB1 SER A 338 LEU A 349 1 12 HELIX 11 AB2 SER A 358 HIS A 365 1 8 HELIX 12 AB3 HIS A 365 GLY A 370 1 6 SHEET 1 AA1 3 TYR A 83 LEU A 85 0 SHEET 2 AA1 3 ARG A 97 ASN A 103 -1 O ILE A 102 N GLN A 84 SHEET 3 AA1 3 GLY A 91 GLU A 92 -1 N GLY A 91 O VAL A 98 SHEET 1 AA2 5 TYR A 83 LEU A 85 0 SHEET 2 AA2 5 ARG A 97 ASN A 103 -1 O ILE A 102 N GLN A 84 SHEET 3 AA2 5 GLU A 109 GLU A 116 -1 O ILE A 114 N ARG A 97 SHEET 4 AA2 5 ARG A 154 GLU A 160 -1 O PHE A 155 N ILE A 115 SHEET 5 AA2 5 LEU A 145 GLU A 150 -1 N ILE A 146 O VAL A 158 SHEET 1 AA3 2 ILE A 211 CYS A 213 0 SHEET 2 AA3 2 VAL A 222 ILE A 224 -1 O LYS A 223 N LEU A 212 SSBOND 1 CYS A 311 CYS A 314 1555 1555 2.06 LINK SG CYS A 311 ZN ZN A 401 1555 1555 2.63 LINK SG CYS A 314 ZN ZN A 401 1555 1555 2.74 CISPEP 1 GLN A 118 PRO A 119 0 2.96 CISPEP 2 SER A 220 PRO A 221 0 -19.39 SITE 1 AC1 4 ARG A 298 CYS A 299 CYS A 311 CYS A 314 SITE 1 AC2 2 LEU A 90 ASP A 226 CRYST1 105.850 105.850 72.690 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009447 0.005454 0.000000 0.00000 SCALE2 0.000000 0.010909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013757 0.00000