PDB Short entry for 6COK HEADER PROTEIN BINDING 12-MAR-18 6COK TITLE STRUCTURE OF THE 2ND TOG DOMAIN FROM YEAST CLASP PROTEIN STU1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN STU1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SUPPRESSOR OF TUBULIN 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: STU1, YBL034C, YBL0416; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEAT REPEAT, SINGLE DOMAIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.MAJUMDAR,L.M.RICE REVDAT 1 23-JAN-19 6COK 0 JRNL AUTH S.MAJUMDAR,T.KIM,Z.CHEN,S.MUNYOKI,S.C.TSO,C.A.BRAUTIGAM, JRNL AUTH 2 L.M.RICE JRNL TITL AN ISOLATED CLASP TOG DOMAIN SUPPRESSES MICROTUBULE JRNL TITL 2 CATASTROPHE AND PROMOTES RESCUE. JRNL REF MOL. BIOL. CELL V. 29 1359 2018 JRNL REFN ESSN 1939-4586 JRNL PMID 29851564 JRNL DOI 10.1091/MBC.E17-12-0748 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 23025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9590 - 3.7761 0.98 2860 152 0.1610 0.1690 REMARK 3 2 3.7761 - 2.9975 0.99 2830 148 0.1689 0.2353 REMARK 3 3 2.9975 - 2.6187 0.99 2827 149 0.1781 0.2194 REMARK 3 4 2.6187 - 2.3793 0.98 2836 150 0.1735 0.2063 REMARK 3 5 2.3793 - 2.2088 0.99 2855 149 0.1691 0.2221 REMARK 3 6 2.2088 - 2.0785 0.98 2808 149 0.1778 0.2299 REMARK 3 7 2.0785 - 1.9744 0.92 2646 139 0.1916 0.2279 REMARK 3 8 1.9744 - 1.8885 0.76 2211 116 0.2141 0.2929 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2242 REMARK 3 ANGLE : 0.810 3043 REMARK 3 CHIRALITY : 0.047 367 REMARK 3 PLANARITY : 0.005 377 REMARK 3 DIHEDRAL : 11.347 1387 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7716 45.5122 45.6265 REMARK 3 T TENSOR REMARK 3 T11: 0.1088 T22: 0.1977 REMARK 3 T33: 0.2131 T12: 0.0084 REMARK 3 T13: 0.0498 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 2.8759 L22: 3.8951 REMARK 3 L33: 4.2763 L12: 0.8415 REMARK 3 L13: 1.5636 L23: -1.3433 REMARK 3 S TENSOR REMARK 3 S11: 0.2994 S12: 0.0558 S13: -0.1590 REMARK 3 S21: -0.2162 S22: -0.1956 S23: -0.5502 REMARK 3 S31: 0.3544 S32: 0.3204 S33: 0.0657 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5204 18.6532 27.1715 REMARK 3 T TENSOR REMARK 3 T11: 0.2789 T22: 0.1322 REMARK 3 T33: 0.2293 T12: 0.0257 REMARK 3 T13: -0.1352 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 2.1487 L22: 1.9155 REMARK 3 L33: 0.8449 L12: -0.0107 REMARK 3 L13: -0.8985 L23: -0.2680 REMARK 3 S TENSOR REMARK 3 S11: -0.0520 S12: 0.4384 S13: -0.2994 REMARK 3 S21: -0.3202 S22: 0.0140 S23: 0.0214 REMARK 3 S31: -0.0250 S32: -0.3667 S33: -0.0632 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0716 19.7163 32.1463 REMARK 3 T TENSOR REMARK 3 T11: 0.1502 T22: 0.1205 REMARK 3 T33: 0.0999 T12: 0.0050 REMARK 3 T13: -0.0212 T23: -0.0724 REMARK 3 L TENSOR REMARK 3 L11: 2.2669 L22: 7.3246 REMARK 3 L33: 6.5002 L12: 0.3185 REMARK 3 L13: -0.9049 L23: -5.4290 REMARK 3 S TENSOR REMARK 3 S11: 0.0927 S12: 0.1147 S13: -0.1675 REMARK 3 S21: -0.1655 S22: -0.0231 S23: -0.0504 REMARK 3 S31: -0.0069 S32: 0.1306 S33: -0.0485 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2337 24.4313 38.9047 REMARK 3 T TENSOR REMARK 3 T11: 0.1129 T22: 0.0846 REMARK 3 T33: 0.1066 T12: 0.0337 REMARK 3 T13: 0.0016 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 1.8311 L22: 7.2446 REMARK 3 L33: 4.7343 L12: 0.4655 REMARK 3 L13: -0.1302 L23: -2.6749 REMARK 3 S TENSOR REMARK 3 S11: 0.0726 S12: -0.0035 S13: -0.1106 REMARK 3 S21: 0.2606 S22: 0.0909 S23: -0.2114 REMARK 3 S31: -0.1059 S32: -0.0031 S33: -0.1300 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9866 32.0405 45.1864 REMARK 3 T TENSOR REMARK 3 T11: 0.2360 T22: 0.1153 REMARK 3 T33: 0.1627 T12: 0.0468 REMARK 3 T13: -0.0534 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 2.2789 L22: 2.5180 REMARK 3 L33: 4.4974 L12: 0.4618 REMARK 3 L13: 0.4513 L23: -0.2918 REMARK 3 S TENSOR REMARK 3 S11: -0.1525 S12: -0.1870 S13: -0.0638 REMARK 3 S21: 0.4576 S22: 0.0997 S23: -0.2907 REMARK 3 S31: -0.1044 S32: -0.2091 S33: 0.0464 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2094 42.0318 46.0409 REMARK 3 T TENSOR REMARK 3 T11: 0.0718 T22: 0.1525 REMARK 3 T33: 0.1482 T12: -0.0078 REMARK 3 T13: -0.0001 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 2.6807 L22: 4.0947 REMARK 3 L33: 2.1652 L12: 0.0577 REMARK 3 L13: 0.0396 L23: -0.6679 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: 0.0224 S13: 0.1739 REMARK 3 S21: -0.2449 S22: 0.0204 S23: 0.1761 REMARK 3 S31: 0.0759 S32: -0.2964 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0912 47.9087 49.6916 REMARK 3 T TENSOR REMARK 3 T11: 0.0527 T22: 0.1627 REMARK 3 T33: 0.1068 T12: -0.0178 REMARK 3 T13: 0.0157 T23: -0.0536 REMARK 3 L TENSOR REMARK 3 L11: 2.0598 L22: 3.0603 REMARK 3 L33: 2.1970 L12: 0.5273 REMARK 3 L13: -0.5229 L23: -0.5583 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: -0.0431 S13: 0.1096 REMARK 3 S21: -0.0568 S22: -0.0594 S23: 0.1383 REMARK 3 S31: -0.0475 S32: -0.0564 S33: 0.0212 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6304 53.7841 56.8674 REMARK 3 T TENSOR REMARK 3 T11: 0.1159 T22: 0.2110 REMARK 3 T33: 0.1385 T12: -0.0348 REMARK 3 T13: 0.0312 T23: -0.0724 REMARK 3 L TENSOR REMARK 3 L11: 1.4252 L22: 3.9346 REMARK 3 L33: 3.3240 L12: 0.0699 REMARK 3 L13: 1.0363 L23: -1.5252 REMARK 3 S TENSOR REMARK 3 S11: 0.0843 S12: -0.3079 S13: 0.1912 REMARK 3 S21: 0.4701 S22: -0.0526 S23: 0.0592 REMARK 3 S31: -0.3623 S32: -0.0829 S33: -0.0106 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 302 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9320 54.7228 62.8795 REMARK 3 T TENSOR REMARK 3 T11: 0.5918 T22: 0.6160 REMARK 3 T33: 0.4618 T12: -0.2511 REMARK 3 T13: 0.0182 T23: -0.1410 REMARK 3 L TENSOR REMARK 3 L11: 6.9219 L22: 7.6461 REMARK 3 L33: 8.0226 L12: -1.9361 REMARK 3 L13: -1.5737 L23: -0.1707 REMARK 3 S TENSOR REMARK 3 S11: 0.3842 S12: -0.9314 S13: 0.4271 REMARK 3 S21: 1.7285 S22: -0.1355 S23: -0.0484 REMARK 3 S31: -0.3492 S32: -0.0579 S33: -0.1599 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6COK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23899 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 0.1 M HEPES PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.50450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 ASP A 1 REMARK 465 LEU A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 5 REMARK 465 LYS A 6 REMARK 465 PHE A 7 REMARK 465 LYS A 8 REMARK 465 GLN A 9 REMARK 465 LYS A 10 REMARK 465 PHE A 11 REMARK 465 ILE A 12 REMARK 465 SER A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 LYS A 16 REMARK 465 SER A 17 REMARK 465 GLN A 18 REMARK 465 ASP A 19 REMARK 465 GLN A 20 REMARK 465 HIS A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 GLN A 24 REMARK 465 GLU A 25 REMARK 465 ASP A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 47 REMARK 465 GLN A 48 REMARK 465 LEU A 49 REMARK 465 SER A 50 REMARK 465 ASN A 51 REMARK 465 ASN A 52 REMARK 465 LEU A 53 REMARK 465 SER A 54 REMARK 465 SER A 55 REMARK 465 LYS A 56 REMARK 465 ASP A 57 REMARK 465 PRO A 58 REMARK 465 ALA A 59 REMARK 465 MET A 60 REMARK 465 LYS A 61 REMARK 465 LYS A 62 REMARK 465 ASN A 63 REMARK 465 ASN A 243 REMARK 465 ASN A 244 REMARK 465 SER A 245 REMARK 465 ASN A 246 REMARK 465 THR A 247 REMARK 465 THR A 248 REMARK 465 SER A 249 REMARK 465 PRO A 250 REMARK 465 THR A 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 65 CG CD OE1 OE2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 35 O HOH A 401 2.16 REMARK 500 NE2 GLN A 207 O HOH A 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 549 O HOH A 555 1455 2.10 REMARK 500 O HOH A 408 O HOH A 533 1554 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 157 -116.96 31.92 REMARK 500 SER A 302 -19.58 -142.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 556 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 557 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 558 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A 559 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH A 560 DISTANCE = 8.51 ANGSTROMS REMARK 525 HOH A 561 DISTANCE = 8.51 ANGSTROMS DBREF 6COK A 1 319 UNP P38198 STU1_YEAST 249 567 SEQADV 6COK SER A 0 UNP P38198 EXPRESSION TAG SEQRES 1 A 320 SER ASP LEU GLU VAL GLU LYS PHE LYS GLN LYS PHE ILE SEQRES 2 A 320 SER LEU ALA LYS SER GLN ASP GLN HIS GLY SER GLN GLU SEQRES 3 A 320 ASP LYS SER THR LEU PHE ASP GLU GLU TYR GLU PHE GLN SEQRES 4 A 320 LEU LEU LEU ALA GLU ALA LYS LEU PRO GLN LEU SER ASN SEQRES 5 A 320 ASN LEU SER SER LYS ASP PRO ALA MET LYS LYS ASN TYR SEQRES 6 A 320 GLU SER LEU ASN GLN LEU GLN GLN ASP LEU GLU ASN LEU SEQRES 7 A 320 LEU ALA PRO PHE GLN SER VAL LYS GLU THR GLU GLN ASN SEQRES 8 A 320 TRP LYS LEU ARG GLN SER ASN ILE ILE GLU LEU ASP ASN SEQRES 9 A 320 ILE ILE SER GLY ASN ILE PRO LYS ASP ASN PRO GLU GLU SEQRES 10 A 320 PHE VAL THR VAL ILE LYS GLU VAL GLN LEU ILE GLU LEU SEQRES 11 A 320 ILE SER ARG ALA THR SER SER LEU ARG THR THR LEU SER SEQRES 12 A 320 LEU THR ALA LEU LEU PHE LEU LYS ARG LEU ILE HIS ILE SEQRES 13 A 320 LEU ASN ASP GLN LEU PRO LEU SER ILE LEU ASP GLN ILE SEQRES 14 A 320 PHE VAL ILE PHE LYS ASN LEU LEU SER SER THR LYS LYS SEQRES 15 A 320 ILE SER SER GLN THR ALA PHE HIS CYS LEU ILE THR LEU SEQRES 16 A 320 ILE ILE ASP ILE ASN HIS PHE HIS ASN LYS LEU PHE GLN SEQRES 17 A 320 LEU SER PHE LEU LEU ILE ASN GLU LYS THR VAL THR PRO SEQRES 18 A 320 ARG PHE CYS SER ALA ILE LEU LEU ARG SER PHE LEU ILE SEQRES 19 A 320 LYS PHE ASN ASP SER ASN LEU SER LEU ASN ASN SER ASN SEQRES 20 A 320 THR THR SER PRO THR SER LYS LEU GLU ASN ASN ILE ILE SEQRES 21 A 320 TYR ILE GLU GLU TRP LEU LYS LYS GLY ILE SER ASP SER SEQRES 22 A 320 GLN THR THR VAL ARG GLU ALA MET ARG LEU THR PHE TRP SEQRES 23 A 320 TYR PHE TYR LYS CYS TYR PRO THR ASN ALA LYS ARG LEU SEQRES 24 A 320 LEU SER SER SER PHE SER PRO GLN LEU LYS LYS ALA THR SEQRES 25 A 320 GLU LEU ALA ILE PRO ALA HIS LEU FORMUL 2 HOH *161(H2 O) HELIX 1 AA1 ASP A 32 ALA A 44 1 13 HELIX 2 AA2 SER A 66 ALA A 79 1 14 HELIX 3 AA3 PRO A 80 GLN A 82 5 3 HELIX 4 AA4 ASN A 90 SER A 106 1 17 HELIX 5 AA5 GLY A 107 ASN A 113 1 7 HELIX 6 AA6 ASN A 113 VAL A 124 1 12 HELIX 7 AA7 GLN A 125 SER A 135 1 11 HELIX 8 AA8 ARG A 138 ASN A 157 1 20 HELIX 9 AA9 ASP A 158 LEU A 160 5 3 HELIX 10 AB1 PRO A 161 LEU A 176 1 16 HELIX 11 AB2 LYS A 180 ILE A 198 1 19 HELIX 12 AB3 HIS A 202 LEU A 212 1 11 HELIX 13 AB4 ILE A 213 GLU A 215 5 3 HELIX 14 AB5 THR A 217 ASN A 236 1 20 HELIX 15 AB6 ASN A 236 LEU A 242 1 7 HELIX 16 AB7 LEU A 254 ASN A 256 5 3 HELIX 17 AB8 ASN A 257 SER A 270 1 14 HELIX 18 AB9 GLN A 273 TYR A 291 1 19 HELIX 19 AC1 TYR A 291 SER A 302 1 12 HELIX 20 AC2 SER A 304 LEU A 313 1 10 CRYST1 31.412 111.009 44.937 90.00 101.36 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031835 0.000000 0.006397 0.00000 SCALE2 0.000000 0.009008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022698 0.00000