PDB Short entry for 6CSU HEADER CELL CYCLE 21-MAR-18 6CSU TITLE THE STRUCTURE OF THE CEP63-CEP152 HETEROTETRAMERIC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CENTROSOMAL PROTEIN OF 152 KDA; COMPND 3 CHAIN: B, D; COMPND 4 SYNONYM: CEP152; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CENTROSOMAL PROTEIN OF 63 KDA; COMPND 8 CHAIN: C, A; COMPND 9 SYNONYM: CEP63; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CEP152, KIAA0912; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CEP63; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CENTROSOME, HYDROPHOBIC, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR E.LEE,Y.CHEN,L.ZHANG,T.S.KIM,J.I.AHN,J.E.PARK,K.S.LEE REVDAT 2 13-MAR-24 6CSU 1 REMARK REVDAT 1 27-MAR-19 6CSU 0 JRNL AUTH T.S.KIM,L.ZHANG,J.IL AHN,L.MENG,Y.CHEN,E.LEE,J.K.BANG, JRNL AUTH 2 J.M.LIM,R.GHIRLANDO,L.FAN,Y.X.WANG,B.Y.KIM,J.E.PARK,K.S.LEE JRNL TITL MOLECULAR ARCHITECTURE OF A CYLINDRICAL SELF-ASSEMBLY AT JRNL TITL 2 HUMAN CENTROSOMES. JRNL REF NAT COMMUN V. 10 1151 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30858376 JRNL DOI 10.1038/S41467-019-08838-2 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.520 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 8163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8705 - 4.5199 0.96 1394 156 0.2617 0.3085 REMARK 3 2 4.5199 - 3.5945 0.97 1314 145 0.2126 0.2358 REMARK 3 3 3.5945 - 3.1422 0.97 1287 143 0.2562 0.2728 REMARK 3 4 3.1422 - 2.8558 0.93 1239 138 0.2487 0.3038 REMARK 3 5 2.8558 - 2.6516 0.85 1115 124 0.2782 0.3298 REMARK 3 6 2.6516 - 2.4956 0.77 997 111 0.2958 0.3358 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1498 REMARK 3 ANGLE : 0.601 1985 REMARK 3 CHIRALITY : 0.031 219 REMARK 3 PLANARITY : 0.002 255 REMARK 3 DIHEDRAL : 21.525 966 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6CSU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1000233313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R CDTE 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8163 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 19.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES (PH 5.4), 23% PEG 3350 AND REMARK 280 0.2 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.03300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.80950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.76150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 102.80950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.03300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 20.76150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1204 REMARK 465 ARG B 1256 REMARK 465 LYS B 1257 REMARK 465 LYS C 541 REMARK 465 ARG D 1256 REMARK 465 LYS D 1257 REMARK 465 GLU A 531 REMARK 465 LYS A 532 REMARK 465 THR A 533 REMARK 465 VAL A 534 REMARK 465 ARG A 535 REMARK 465 GLN A 536 REMARK 465 PHE A 537 REMARK 465 THR A 538 REMARK 465 ALA A 539 REMARK 465 LEU A 540 REMARK 465 LYS A 541 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN C 536 O HOH C 601 2.09 REMARK 500 OG SER B 1232 NH1 ARG A 511 2.10 REMARK 500 OE2 GLU B 1243 N ALA C 498 2.10 REMARK 500 O HOH C 606 O HOH C 607 2.12 REMARK 500 O LEU A 526 OG SER A 530 2.15 REMARK 500 REMARK 500 REMARK: NULL DBREF 6CSU B 1205 1257 UNP O94986 CE152_HUMAN 1261 1313 DBREF 6CSU C 502 541 UNP Q96MT8 CEP63_HUMAN 664 703 DBREF 6CSU D 1205 1257 UNP O94986 CE152_HUMAN 1261 1313 DBREF 6CSU A 502 541 UNP Q96MT8 CEP63_HUMAN 664 703 SEQADV 6CSU MET B 1204 UNP O94986 INITIATING METHIONINE SEQADV 6CSU ALA C 498 UNP Q96MT8 EXPRESSION TAG SEQADV 6CSU CYS C 499 UNP Q96MT8 EXPRESSION TAG SEQADV 6CSU LEU C 500 UNP Q96MT8 EXPRESSION TAG SEQADV 6CSU ASN C 501 UNP Q96MT8 EXPRESSION TAG SEQADV 6CSU MET D 1204 UNP O94986 INITIATING METHIONINE SEQADV 6CSU ALA A 498 UNP Q96MT8 EXPRESSION TAG SEQADV 6CSU CYS A 499 UNP Q96MT8 EXPRESSION TAG SEQADV 6CSU LEU A 500 UNP Q96MT8 EXPRESSION TAG SEQADV 6CSU ASN A 501 UNP Q96MT8 EXPRESSION TAG SEQRES 1 B 54 MET GLY ALA LEU GLU GLU LEU ARG GLY GLN TYR ILE LYS SEQRES 2 B 54 ALA VAL LYS LYS ILE LYS CYS ASP MET LEU ARG TYR ILE SEQRES 3 B 54 GLN GLU SER LYS GLU ARG ALA ALA GLU MET VAL LYS ALA SEQRES 4 B 54 GLU VAL LEU ARG GLU ARG GLN GLU THR ALA ARG LYS MET SEQRES 5 B 54 ARG LYS SEQRES 1 C 44 ALA CYS LEU ASN THR ARG PHE LEU GLU GLU GLU GLU LEU SEQRES 2 C 44 ARG SER HIS HIS ILE LEU GLU ARG LEU ASP ALA HIS ILE SEQRES 3 C 44 GLU GLU LEU LYS ARG GLU SER GLU LYS THR VAL ARG GLN SEQRES 4 C 44 PHE THR ALA LEU LYS SEQRES 1 D 54 MET GLY ALA LEU GLU GLU LEU ARG GLY GLN TYR ILE LYS SEQRES 2 D 54 ALA VAL LYS LYS ILE LYS CYS ASP MET LEU ARG TYR ILE SEQRES 3 D 54 GLN GLU SER LYS GLU ARG ALA ALA GLU MET VAL LYS ALA SEQRES 4 D 54 GLU VAL LEU ARG GLU ARG GLN GLU THR ALA ARG LYS MET SEQRES 5 D 54 ARG LYS SEQRES 1 A 44 ALA CYS LEU ASN THR ARG PHE LEU GLU GLU GLU GLU LEU SEQRES 2 A 44 ARG SER HIS HIS ILE LEU GLU ARG LEU ASP ALA HIS ILE SEQRES 3 A 44 GLU GLU LEU LYS ARG GLU SER GLU LYS THR VAL ARG GLN SEQRES 4 A 44 PHE THR ALA LEU LYS FORMUL 5 HOH *15(H2 O) HELIX 1 AA1 GLY B 1205 MET B 1255 1 51 HELIX 2 AA2 CYS C 499 LEU C 540 1 42 HELIX 3 AA3 GLY D 1205 LEU D 1245 1 41 HELIX 4 AA4 ARG D 1246 MET D 1255 1 10 HELIX 5 AA5 CYS A 499 GLU A 529 1 31 CRYST1 28.066 41.523 205.619 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035630 0.000000 0.000000 0.00000 SCALE2 0.000000 0.024083 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004863 0.00000