PDB Short entry for 6D0L HEADER PROTEIN BINDING 10-APR-18 6D0L TITLE STRUCTURE OF HUMAN TIRR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUDOR-INTERACTING REPAIR REGULATOR PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUDT16-LIKE PROTEIN 1,PROTEIN SYNDESMOS; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT16L1, SDOS, TIRR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBB75 KEYWDS PROTEIN BINDING, RNA BINDING, NUDT16L1, 53BP1, DNA DAMAGE RESPONSE, KEYWDS 2 DNA DOUBLE-STRAND BREAK REPAIR EXPDTA X-RAY DIFFRACTION AUTHOR G.CUI,M.V.BOTUYAN,G.MER REVDAT 5 04-OCT-23 6D0L 1 REMARK REVDAT 4 04-DEC-19 6D0L 1 REMARK REVDAT 3 25-JUL-18 6D0L 1 JRNL REVDAT 2 11-JUL-18 6D0L 1 JRNL REVDAT 1 06-JUN-18 6D0L 0 JRNL AUTH M.V.BOTUYAN,G.CUI,P.DRANE,C.OLIVEIRA,A.DETAPPE,M.E.BRAULT, JRNL AUTH 2 N.PARNANDI,S.CHAUBEY,J.R.THOMPSON,B.BRAGANTINI,D.ZHAO, JRNL AUTH 3 J.R.CHAPMAN,D.CHOWDHURY,G.MER JRNL TITL MECHANISM OF 53BP1 ACTIVITY REGULATION BY RNA-BINDING TIRR JRNL TITL 2 AND A DESIGNER PROTEIN. JRNL REF NAT. STRUCT. MOL. BIOL. V. 25 591 2018 JRNL REFN ESSN 1545-9985 JRNL PMID 29967538 JRNL DOI 10.1038/S41594-018-0083-Z REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 22048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0000 - 3.9392 0.98 2742 145 0.1575 0.1670 REMARK 3 2 3.9392 - 3.1271 0.96 2679 141 0.1492 0.1801 REMARK 3 3 3.1271 - 2.7320 0.96 2674 141 0.1726 0.2001 REMARK 3 4 2.7320 - 2.4822 0.95 2673 140 0.1814 0.2315 REMARK 3 5 2.4822 - 2.3043 0.95 2633 139 0.1832 0.2228 REMARK 3 6 2.3043 - 2.1685 0.92 2604 137 0.2015 0.2745 REMARK 3 7 2.1685 - 2.0599 0.92 2530 134 0.2099 0.2714 REMARK 3 8 2.0599 - 1.9702 0.86 2409 127 0.2127 0.2640 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3257 REMARK 3 ANGLE : 0.710 4431 REMARK 3 CHIRALITY : 0.044 505 REMARK 3 PLANARITY : 0.005 566 REMARK 3 DIHEDRAL : 11.352 1217 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2040 -14.9723 46.1584 REMARK 3 T TENSOR REMARK 3 T11: 0.2863 T22: 0.3735 REMARK 3 T33: 0.2449 T12: 0.0360 REMARK 3 T13: -0.0916 T23: -0.1208 REMARK 3 L TENSOR REMARK 3 L11: 0.5243 L22: 3.1596 REMARK 3 L33: 1.8259 L12: -0.5570 REMARK 3 L13: 0.5240 L23: 1.2302 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.1370 S13: -0.0917 REMARK 3 S21: 0.2971 S22: 0.2547 S23: -0.4346 REMARK 3 S31: 0.2424 S32: 0.1169 S33: -0.2529 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9159 -15.5671 29.7571 REMARK 3 T TENSOR REMARK 3 T11: 0.0402 T22: 0.1086 REMARK 3 T33: 0.1065 T12: -0.0188 REMARK 3 T13: 0.0191 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.7641 L22: 1.1286 REMARK 3 L33: 0.8758 L12: -0.4164 REMARK 3 L13: 0.1730 L23: 0.5534 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: -0.0491 S13: 0.0580 REMARK 3 S21: -0.0318 S22: 0.0226 S23: -0.0473 REMARK 3 S31: -0.0104 S32: 0.0549 S33: -0.0113 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4956 -17.1532 41.5303 REMARK 3 T TENSOR REMARK 3 T11: 0.1868 T22: 0.2700 REMARK 3 T33: 0.1820 T12: 0.0311 REMARK 3 T13: 0.0797 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 5.6063 L22: 4.3752 REMARK 3 L33: 4.3363 L12: 0.2844 REMARK 3 L13: 1.4425 L23: -0.1920 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: -0.4115 S13: -0.4886 REMARK 3 S21: 0.1957 S22: -0.1259 S23: -0.4128 REMARK 3 S31: 0.5200 S32: 0.3753 S33: 0.0093 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3096 -24.8413 31.7452 REMARK 3 T TENSOR REMARK 3 T11: 0.0536 T22: 0.0944 REMARK 3 T33: 0.0680 T12: -0.0204 REMARK 3 T13: 0.0113 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.0235 L22: 1.6871 REMARK 3 L33: 0.7858 L12: -0.1809 REMARK 3 L13: -0.1558 L23: 0.3793 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: -0.0317 S13: -0.0227 REMARK 3 S21: 0.0667 S22: 0.0105 S23: 0.0965 REMARK 3 S31: 0.0770 S32: -0.0095 S33: 0.0074 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9197 -48.7165 6.4609 REMARK 3 T TENSOR REMARK 3 T11: 0.4768 T22: 0.6326 REMARK 3 T33: 0.6411 T12: -0.0503 REMARK 3 T13: -0.0047 T23: -0.4047 REMARK 3 L TENSOR REMARK 3 L11: 1.2249 L22: 0.5933 REMARK 3 L33: 2.0682 L12: 0.0925 REMARK 3 L13: -1.4080 L23: 0.3961 REMARK 3 S TENSOR REMARK 3 S11: -0.4095 S12: 0.1638 S13: -0.2765 REMARK 3 S21: -0.5946 S22: 0.0136 S23: 0.1742 REMARK 3 S31: -0.0533 S32: -0.0711 S33: 0.0689 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9284 -32.5328 11.7110 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.1675 REMARK 3 T33: 0.0792 T12: -0.0014 REMARK 3 T13: -0.0032 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 2.6723 L22: 2.2568 REMARK 3 L33: 2.4325 L12: -0.2863 REMARK 3 L13: 0.8362 L23: 0.2685 REMARK 3 S TENSOR REMARK 3 S11: 0.1107 S12: 0.0295 S13: 0.0011 REMARK 3 S21: 0.0631 S22: -0.1280 S23: -0.2263 REMARK 3 S31: 0.0395 S32: 0.1990 S33: -0.0046 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7090 -32.8093 13.5095 REMARK 3 T TENSOR REMARK 3 T11: -0.2910 T22: 0.3442 REMARK 3 T33: 0.1789 T12: -0.0480 REMARK 3 T13: 0.0244 T23: -0.0684 REMARK 3 L TENSOR REMARK 3 L11: 0.6735 L22: 0.5371 REMARK 3 L33: 0.5081 L12: -0.1106 REMARK 3 L13: -0.0385 L23: 0.0171 REMARK 3 S TENSOR REMARK 3 S11: 0.2631 S12: 0.4207 S13: -0.2262 REMARK 3 S21: -0.2303 S22: -0.1359 S23: 0.3137 REMARK 3 S31: 0.2239 S32: -0.3750 S33: 0.0413 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4049 -36.5418 6.1407 REMARK 3 T TENSOR REMARK 3 T11: 0.1379 T22: 0.3955 REMARK 3 T33: 0.2894 T12: -0.0579 REMARK 3 T13: -0.0219 T23: -0.1295 REMARK 3 L TENSOR REMARK 3 L11: 3.8769 L22: 4.8663 REMARK 3 L33: 2.8482 L12: 0.8112 REMARK 3 L13: 2.0576 L23: 0.1710 REMARK 3 S TENSOR REMARK 3 S11: -0.0785 S12: 0.4960 S13: -0.2519 REMARK 3 S21: 0.0554 S22: -0.0907 S23: 0.3578 REMARK 3 S31: -0.1363 S32: -0.5475 S33: 0.1695 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 108 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1562 -33.0214 14.6941 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: 0.1188 REMARK 3 T33: 0.0912 T12: -0.0231 REMARK 3 T13: 0.0136 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 1.2939 L22: 1.3782 REMARK 3 L33: 1.8574 L12: -0.0994 REMARK 3 L13: 0.4037 L23: 0.2657 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: 0.1568 S13: -0.0667 REMARK 3 S21: -0.0784 S22: -0.0569 S23: 0.0640 REMARK 3 S31: -0.0768 S32: -0.1063 S33: 0.0434 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 185 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8994 -43.2669 30.1274 REMARK 3 T TENSOR REMARK 3 T11: 0.1250 T22: 0.1298 REMARK 3 T33: 0.1868 T12: -0.0224 REMARK 3 T13: 0.0016 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 5.2430 L22: 4.8160 REMARK 3 L33: 7.1091 L12: -0.1862 REMARK 3 L13: -0.4923 L23: 0.4695 REMARK 3 S TENSOR REMARK 3 S11: 0.0633 S12: -0.6104 S13: -0.0934 REMARK 3 S21: 0.5472 S22: 0.1405 S23: -0.1244 REMARK 3 S31: 0.0837 S32: 0.4442 S33: -0.1144 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233824. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22070 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 38.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08370 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.33810 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3KVH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.06 M CITRIC ACID, 0.04 M BIS-TRIS REMARK 280 -PROPANE, PH 4.1, 16% PEG 3,350; CRYOPROTECTION IN 25% PEG 3,350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 5 REMARK 465 VAL A 6 REMARK 465 PRO A 7 REMARK 465 GLY A 104 REMARK 465 PRO A 105 REMARK 465 SER A 211 REMARK 465 MET B 5 REMARK 465 VAL B 6 REMARK 465 PRO B 7 REMARK 465 GLU B 8 REMARK 465 LEU B 86 REMARK 465 GLY B 87 REMARK 465 CYS B 88 REMARK 465 GLY B 104 REMARK 465 PRO B 105 REMARK 465 ALA B 209 REMARK 465 SER B 210 REMARK 465 SER B 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 ARG A 133 NE CZ NH1 NH2 REMARK 470 LYS B 10 CG CD CE NZ REMARK 470 LEU B 20 CG CD1 CD2 REMARK 470 ARG B 69 CD NE CZ NH1 NH2 REMARK 470 ARG B 70 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 89 CG CD1 CD2 REMARK 470 ARG B 90 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 103 CG CD OE1 OE2 REMARK 470 HIS B 106 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 133 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 137 CG CD1 CD2 REMARK 470 GLU B 138 CG CD OE1 OE2 REMARK 470 LYS B 151 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 43 -15.89 -144.96 REMARK 500 ARG A 47 -70.14 68.83 REMARK 500 ARG A 47 -69.94 68.68 REMARK 500 CYS A 88 -72.92 -132.89 REMARK 500 LEU A 137 -91.88 -120.12 REMARK 500 LEU A 207 66.27 -150.25 REMARK 500 ARG B 43 -39.55 -141.56 REMARK 500 ARG B 47 -80.30 70.65 REMARK 500 LEU B 97 -54.63 -120.01 REMARK 500 LEU B 137 -78.16 -129.38 REMARK 500 VAL B 154 -32.36 -130.78 REMARK 500 ASN B 163 -174.92 -68.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 459 DISTANCE = 6.53 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6CO1 RELATED DB: PDB REMARK 900 RELATED ID: 6CO2 RELATED DB: PDB DBREF 6D0L A 6 211 UNP Q9BRJ7 TIRR_HUMAN 6 211 DBREF 6D0L B 6 211 UNP Q9BRJ7 TIRR_HUMAN 6 211 SEQADV 6D0L MET A 5 UNP Q9BRJ7 INITIATING METHIONINE SEQADV 6D0L MET B 5 UNP Q9BRJ7 INITIATING METHIONINE SEQRES 1 A 207 MET VAL PRO GLU LEU LYS GLN ILE SER ARG VAL GLU ALA SEQRES 2 A 207 MET ARG LEU GLY PRO GLY TRP SER HIS SER CYS HIS ALA SEQRES 3 A 207 MET LEU TYR ALA ALA ASN PRO GLY GLN LEU PHE GLY ARG SEQRES 4 A 207 ILE PRO MET ARG PHE SER VAL LEU MET GLN MET ARG PHE SEQRES 5 A 207 ASP GLY LEU LEU GLY PHE PRO GLY GLY PHE VAL ASP ARG SEQRES 6 A 207 ARG PHE TRP SER LEU GLU ASP GLY LEU ASN ARG VAL LEU SEQRES 7 A 207 GLY LEU GLY LEU GLY CYS LEU ARG LEU THR GLU ALA ASP SEQRES 8 A 207 TYR LEU SER SER HIS LEU THR GLU GLY PRO HIS ARG VAL SEQRES 9 A 207 VAL ALA HIS LEU TYR ALA ARG GLN LEU THR LEU GLU GLN SEQRES 10 A 207 LEU HIS ALA VAL GLU ILE SER ALA VAL HIS SER ARG ASP SEQRES 11 A 207 HIS GLY LEU GLU VAL LEU GLY LEU VAL ARG VAL PRO LEU SEQRES 12 A 207 TYR THR GLN LYS ASP ARG VAL GLY GLY PHE PRO ASN PHE SEQRES 13 A 207 LEU SER ASN ALA PHE VAL SER THR ALA LYS CYS GLN LEU SEQRES 14 A 207 LEU PHE ALA LEU LYS VAL LEU ASN MET MET PRO GLU GLU SEQRES 15 A 207 LYS LEU VAL GLU ALA LEU ALA ALA ALA THR GLU LYS GLN SEQRES 16 A 207 LYS LYS ALA LEU GLU LYS LEU LEU PRO ALA SER SER SEQRES 1 B 207 MET VAL PRO GLU LEU LYS GLN ILE SER ARG VAL GLU ALA SEQRES 2 B 207 MET ARG LEU GLY PRO GLY TRP SER HIS SER CYS HIS ALA SEQRES 3 B 207 MET LEU TYR ALA ALA ASN PRO GLY GLN LEU PHE GLY ARG SEQRES 4 B 207 ILE PRO MET ARG PHE SER VAL LEU MET GLN MET ARG PHE SEQRES 5 B 207 ASP GLY LEU LEU GLY PHE PRO GLY GLY PHE VAL ASP ARG SEQRES 6 B 207 ARG PHE TRP SER LEU GLU ASP GLY LEU ASN ARG VAL LEU SEQRES 7 B 207 GLY LEU GLY LEU GLY CYS LEU ARG LEU THR GLU ALA ASP SEQRES 8 B 207 TYR LEU SER SER HIS LEU THR GLU GLY PRO HIS ARG VAL SEQRES 9 B 207 VAL ALA HIS LEU TYR ALA ARG GLN LEU THR LEU GLU GLN SEQRES 10 B 207 LEU HIS ALA VAL GLU ILE SER ALA VAL HIS SER ARG ASP SEQRES 11 B 207 HIS GLY LEU GLU VAL LEU GLY LEU VAL ARG VAL PRO LEU SEQRES 12 B 207 TYR THR GLN LYS ASP ARG VAL GLY GLY PHE PRO ASN PHE SEQRES 13 B 207 LEU SER ASN ALA PHE VAL SER THR ALA LYS CYS GLN LEU SEQRES 14 B 207 LEU PHE ALA LEU LYS VAL LEU ASN MET MET PRO GLU GLU SEQRES 15 B 207 LYS LEU VAL GLU ALA LEU ALA ALA ALA THR GLU LYS GLN SEQRES 16 B 207 LYS LYS ALA LEU GLU LYS LEU LEU PRO ALA SER SER FORMUL 3 HOH *351(H2 O) HELIX 1 AA1 SER A 13 MET A 18 1 6 HELIX 2 AA2 SER A 73 LEU A 86 1 14 HELIX 3 AA3 THR A 92 ALA A 94 5 3 HELIX 4 AA4 THR A 118 HIS A 131 1 14 HELIX 5 AA5 GLY A 156 SER A 162 1 7 HELIX 6 AA6 VAL A 166 LEU A 180 1 15 HELIX 7 AA7 PRO A 184 LYS A 205 1 22 HELIX 8 AA8 SER B 13 ARG B 19 1 7 HELIX 9 AA9 PHE B 41 ARG B 43 5 3 HELIX 10 AB1 SER B 73 LEU B 82 1 10 HELIX 11 AB2 THR B 92 ALA B 94 5 3 HELIX 12 AB3 THR B 118 VAL B 130 1 13 HELIX 13 AB4 GLY B 156 SER B 162 1 7 HELIX 14 AB5 VAL B 166 LEU B 180 1 15 HELIX 15 AB6 PRO B 184 LYS B 205 1 22 SHEET 1 AA1 6 LYS A 10 ILE A 12 0 SHEET 2 AA1 6 TYR A 96 LEU A 101 -1 O LEU A 101 N LYS A 10 SHEET 3 AA1 6 VAL A 108 GLN A 116 -1 O ALA A 110 N HIS A 100 SHEET 4 AA1 6 SER A 25 LEU A 40 1 N SER A 27 O HIS A 111 SHEET 5 AA1 6 ILE A 44 ARG A 55 -1 O ILE A 44 N LEU A 40 SHEET 6 AA1 6 GLY A 64 PHE A 66 0 SHEET 1 AA2 4 LEU A 60 GLY A 61 0 SHEET 2 AA2 4 ILE A 44 ARG A 55 -1 N GLN A 53 O GLY A 61 SHEET 3 AA2 4 SER A 25 LEU A 40 -1 N LEU A 40 O ILE A 44 SHEET 4 AA2 4 VAL A 139 PRO A 146 0 SHEET 1 AA3 6 GLN B 11 ILE B 12 0 SHEET 2 AA3 6 TYR B 96 LEU B 101 -1 O SER B 99 N ILE B 12 SHEET 3 AA3 6 VAL B 108 LEU B 117 -1 O LEU B 112 N SER B 98 SHEET 4 AA3 6 SER B 25 LEU B 40 1 N TYR B 33 O LEU B 117 SHEET 5 AA3 6 ILE B 44 ARG B 55 -1 O ARG B 47 N ASN B 36 SHEET 6 AA3 6 GLY B 64 VAL B 67 0 SHEET 1 AA4 4 LEU B 60 GLY B 61 0 SHEET 2 AA4 4 ILE B 44 ARG B 55 -1 N GLN B 53 O GLY B 61 SHEET 3 AA4 4 SER B 25 LEU B 40 -1 N ASN B 36 O ARG B 47 SHEET 4 AA4 4 VAL B 139 PRO B 146 0 CRYST1 41.890 46.360 48.800 92.31 108.07 105.75 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023872 0.006733 0.008787 0.00000 SCALE2 0.000000 0.022412 0.003076 0.00000 SCALE3 0.000000 0.000000 0.021757 0.00000