PDB Short entry for 6D27 HEADER MEMBRANE PROTEIN/ANTAGONIST 13-APR-18 6D27 TITLE CRYSTAL STRUCTURE OF THE PROSTAGLANDIN D2 RECEPTOR CRTH2 WITH CAY10471 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROSTAGLANDIN D2 RECEPTOR 2, ENDOLYSIN CHIMERA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CRTH2 (UNP RESIDUES 1-236), T4 LIGASE (UNP RESIDUES 2-12, COMPND 5 61-161), CRTH2 (UNP RESIDUES 238-339); COMPND 6 SYNONYM: CHEMOATTRACTANT RECEPTOR-HOMOLOGOUS MOLECULE EXPRESSED ON COMPND 7 TH2 CELLS,G-PROTEIN COUPLED RECEPTOR 44,LYSIS PROTEIN,LYSOZYME, COMPND 8 MURAMIDASE; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_COMMON: HUMAN, BACTERIOPHAGE T4; SOURCE 4 ORGANISM_TAXID: 9606, 10665; SOURCE 5 GENE: PTGDR2, CRTH2, DL1R, GPR44, E, T4TP126; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS GPCR, MEMBRANE PROTEIN-ANTAGONIST COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.WANG,D.YAO,K.DEEPAK,H.LIU,W.GONG,H.FAN,Z.WEI,C.ZHANG REVDAT 4 04-OCT-23 6D27 1 REMARK REVDAT 3 08-JAN-20 6D27 1 REMARK REVDAT 2 17-APR-19 6D27 1 JRNL REVDAT 1 03-OCT-18 6D27 0 JRNL AUTH L.WANG,D.YAO,R.N.V.K.DEEPAK,H.LIU,Q.XIAO,H.FAN,W.GONG,Z.WEI, JRNL AUTH 2 C.ZHANG JRNL TITL STRUCTURES OF THE HUMAN PGD2RECEPTOR CRTH2 REVEAL NOVEL JRNL TITL 2 MECHANISMS FOR LIGAND RECOGNITION. JRNL REF MOL. CELL V. 72 48 2018 JRNL REFN ISSN 1097-4164 JRNL PMID 30220562 JRNL DOI 10.1016/J.MOLCEL.2018.08.009 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 22256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.0431 - 5.4659 0.93 2884 153 0.2100 0.2199 REMARK 3 2 5.4659 - 4.3426 0.95 2791 146 0.2197 0.2521 REMARK 3 3 4.3426 - 3.7949 0.97 2840 150 0.2284 0.2986 REMARK 3 4 3.7949 - 3.4485 0.97 2793 147 0.2659 0.3616 REMARK 3 5 3.4485 - 3.2016 0.97 2778 146 0.2964 0.3279 REMARK 3 6 3.2016 - 3.0130 0.94 2674 142 0.3132 0.3394 REMARK 3 7 3.0130 - 2.8623 0.87 2500 132 0.3141 0.3350 REMARK 3 8 2.8623 - 2.7378 0.67 1881 99 0.3383 0.4232 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 95.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3677 REMARK 3 ANGLE : 0.609 4976 REMARK 3 CHIRALITY : 0.020 564 REMARK 3 PLANARITY : 0.003 610 REMARK 3 DIHEDRAL : 12.031 1335 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.1293 -50.1752 296.8546 REMARK 3 T TENSOR REMARK 3 T11: 0.5435 T22: 0.7213 REMARK 3 T33: 0.4353 T12: -0.0181 REMARK 3 T13: -0.0049 T23: 0.0986 REMARK 3 L TENSOR REMARK 3 L11: 2.0982 L22: 1.5271 REMARK 3 L33: 5.0114 L12: -0.4550 REMARK 3 L13: 0.5274 L23: -0.4313 REMARK 3 S TENSOR REMARK 3 S11: 0.0300 S12: 0.7749 S13: 0.2321 REMARK 3 S21: -0.3103 S22: -0.0359 S23: 0.0714 REMARK 3 S31: 0.1063 S32: -0.0253 S33: 0.0087 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 1261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.1237 -65.3919 328.8454 REMARK 3 T TENSOR REMARK 3 T11: 1.1329 T22: 0.7121 REMARK 3 T33: 0.6075 T12: 0.0444 REMARK 3 T13: -0.1115 T23: 0.1090 REMARK 3 L TENSOR REMARK 3 L11: 3.0785 L22: 4.2147 REMARK 3 L33: 2.5762 L12: 0.7128 REMARK 3 L13: 0.7555 L23: -2.3680 REMARK 3 S TENSOR REMARK 3 S11: 0.9628 S12: -0.3685 S13: -0.4742 REMARK 3 S21: 1.2084 S22: -0.3802 S23: -0.3238 REMARK 3 S31: 0.7474 S32: 1.8192 S33: -0.2759 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1262 THROUGH 2244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.7959 -44.5557 340.0589 REMARK 3 T TENSOR REMARK 3 T11: 0.8750 T22: 0.8578 REMARK 3 T33: 0.4772 T12: 0.0655 REMARK 3 T13: -0.0630 T23: -0.0820 REMARK 3 L TENSOR REMARK 3 L11: 1.9663 L22: 5.0120 REMARK 3 L33: 4.0817 L12: -0.8323 REMARK 3 L13: -2.0076 L23: 2.3456 REMARK 3 S TENSOR REMARK 3 S11: -0.0887 S12: -0.1890 S13: 0.0434 REMARK 3 S21: 0.1907 S22: 0.1576 S23: -0.2852 REMARK 3 S31: 0.4130 S32: 0.9380 S33: -0.1133 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2245 THROUGH 2327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1516 -58.8052 303.0287 REMARK 3 T TENSOR REMARK 3 T11: 0.4063 T22: 0.5669 REMARK 3 T33: 0.3679 T12: -0.1195 REMARK 3 T13: -0.0642 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 4.5882 L22: 4.0865 REMARK 3 L33: 2.8311 L12: -1.2525 REMARK 3 L13: 1.1704 L23: -0.2641 REMARK 3 S TENSOR REMARK 3 S11: -0.1886 S12: 0.6298 S13: -0.2494 REMARK 3 S21: -0.1855 S22: 0.2008 S23: -0.0153 REMARK 3 S31: 0.6279 S32: -0.1914 S33: 0.0809 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6D27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-18. REMARK 100 THE DEPOSITION ID IS D_1000233864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22351 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.16600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.62800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6D26 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG300, 100 MM MES, PH 6.5, 100 MM REMARK 280 AMMONIUM SULFATE, 2% P400, LIPIDIC CUBIC PHASE, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.08750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 136.10750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.31800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 136.10750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.08750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.31800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ASN A 4 REMARK 465 GLN A 21 REMARK 465 SER A 22 REMARK 465 HIS A 23 REMARK 465 SER A 24 REMARK 465 VAL A 2328 REMARK 465 ASP A 2329 REMARK 465 ASP A 2330 REMARK 465 SER A 2331 REMARK 465 GLU A 2332 REMARK 465 LEU A 2333 REMARK 465 GLY A 2334 REMARK 465 GLY A 2335 REMARK 465 ALA A 2336 REMARK 465 GLY A 2337 REMARK 465 SER A 2338 REMARK 465 SER A 2339 REMARK 465 LEU A 2340 REMARK 465 GLU A 2341 REMARK 465 VAL A 2342 REMARK 465 LEU A 2343 REMARK 465 PHE A 2344 REMARK 465 GLN A 2345 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 30 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 176 CG CD1 CD2 REMARK 470 LEU A 189 CG CD1 CD2 REMARK 470 ASN A 190 CG OD1 ND2 REMARK 470 ARG A1245 CG CD NE CZ NH1 NH2 REMARK 470 ILE A1247 CG1 CG2 CD1 REMARK 470 ARG A1281 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1338 CG CD NE CZ NH1 NH2 REMARK 470 LEU A2327 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 64 -164.57 -121.71 REMARK 500 HIS A 95 73.23 57.21 REMARK 500 PHE A 215 -64.07 -150.84 REMARK 500 ASP A1254 40.60 -80.20 REMARK 500 ASP A1262 44.18 -102.97 REMARK 500 ASP A1271 94.61 -68.02 REMARK 500 LYS A1336 53.96 -103.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FT4 A 2408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 2409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 2411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 2412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 2413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO A 2414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO A 2416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGO A 2417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 2418 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6D26 RELATED DB: PDB DBREF 6D27 A 1 236 UNP Q9Y5Y4 PD2R2_HUMAN 1 236 DBREF 6D27 A 1246 1256 UNP D9IEF7 D9IEF7_BPT4 2 12 DBREF 6D27 A 1262 1362 UNP D9IEF7 D9IEF7_BPT4 61 161 DBREF 6D27 A 2238 2339 UNP Q9Y5Y4 PD2R2_HUMAN 238 339 SEQADV 6D27 GLY A 0 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 6D27 ALA A 25 UNP Q9Y5Y4 ASN 25 ENGINEERED MUTATION SEQADV 6D27 ALA A 204 UNP Q9Y5Y4 VAL 204 VARIANT SEQADV 6D27 ALA A 1238 UNP Q9Y5Y4 INSERTION SEQADV 6D27 ASP A 1239 UNP Q9Y5Y4 INSERTION SEQADV 6D27 LEU A 1240 UNP Q9Y5Y4 INSERTION SEQADV 6D27 GLY A 1241 UNP Q9Y5Y4 INSERTION SEQADV 6D27 LEU A 1242 UNP Q9Y5Y4 INSERTION SEQADV 6D27 GLN A 1243 UNP Q9Y5Y4 INSERTION SEQADV 6D27 HIS A 1244 UNP Q9Y5Y4 INSERTION SEQADV 6D27 ARG A 1245 UNP Q9Y5Y4 INSERTION SEQADV 6D27 GLY A 1257 UNP D9IEF7 INSERTION SEQADV 6D27 GLY A 1258 UNP D9IEF7 INSERTION SEQADV 6D27 SER A 1259 UNP D9IEF7 INSERTION SEQADV 6D27 GLY A 1260 UNP D9IEF7 INSERTION SEQADV 6D27 GLY A 1261 UNP D9IEF7 INSERTION SEQADV 6D27 ALA A 1298 UNP D9IEF7 CYS 97 ENGINEERED MUTATION SEQADV 6D27 LEU A 2340 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 6D27 GLU A 2341 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 6D27 VAL A 2342 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 6D27 LEU A 2343 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 6D27 PHE A 2344 UNP Q9Y5Y4 EXPRESSION TAG SEQADV 6D27 GLN A 2345 UNP Q9Y5Y4 EXPRESSION TAG SEQRES 1 A 470 GLY MET SER ALA ASN ALA THR LEU LYS PRO LEU CYS PRO SEQRES 2 A 470 ILE LEU GLU GLN MET SER ARG LEU GLN SER HIS SER ALA SEQRES 3 A 470 THR SER ILE ARG TYR ILE ASP HIS ALA ALA VAL LEU LEU SEQRES 4 A 470 HIS GLY LEU ALA SER LEU LEU GLY LEU VAL GLU ASN GLY SEQRES 5 A 470 VAL ILE LEU PHE VAL VAL GLY CYS ARG MET ARG GLN THR SEQRES 6 A 470 VAL VAL THR THR TRP VAL LEU HIS LEU ALA LEU SER ASP SEQRES 7 A 470 LEU LEU ALA SER ALA SER LEU PRO PHE PHE THR TYR PHE SEQRES 8 A 470 LEU ALA VAL GLY HIS SER TRP GLU LEU GLY THR THR PHE SEQRES 9 A 470 CYS LYS LEU HIS SER SER ILE PHE PHE LEU ASN MET PHE SEQRES 10 A 470 ALA SER GLY PHE LEU LEU SER ALA ILE SER LEU ASP ARG SEQRES 11 A 470 CYS LEU GLN VAL VAL ARG PRO VAL TRP ALA GLN ASN HIS SEQRES 12 A 470 ARG THR VAL ALA ALA ALA HIS LYS VAL CYS LEU VAL LEU SEQRES 13 A 470 TRP ALA LEU ALA VAL LEU ASN THR VAL PRO TYR PHE VAL SEQRES 14 A 470 PHE ARG ASP THR ILE SER ARG LEU ASP GLY ARG ILE MET SEQRES 15 A 470 CYS TYR TYR ASN VAL LEU LEU LEU ASN PRO GLY PRO ASP SEQRES 16 A 470 ARG ASP ALA THR CYS ASN SER ARG GLN ALA ALA LEU ALA SEQRES 17 A 470 VAL SER LYS PHE LEU LEU ALA PHE LEU VAL PRO LEU ALA SEQRES 18 A 470 ILE ILE ALA SER SER HIS ALA ALA VAL SER LEU ARG LEU SEQRES 19 A 470 GLN HIS ARG ALA ASP LEU GLY LEU GLN HIS ARG ASN ILE SEQRES 20 A 470 PHE GLU MET LEU ARG ILE ASP GLU GLY GLY GLY SER GLY SEQRES 21 A 470 GLY ASP GLU ALA GLU LYS LEU PHE ASN GLN ASP VAL ASP SEQRES 22 A 470 ALA ALA VAL ARG GLY ILE LEU ARG ASN ALA LYS LEU LYS SEQRES 23 A 470 PRO VAL TYR ASP SER LEU ASP ALA VAL ARG ARG ALA ALA SEQRES 24 A 470 LEU ILE ASN MET VAL PHE GLN MET GLY GLU THR GLY VAL SEQRES 25 A 470 ALA GLY PHE THR ASN SER LEU ARG MET LEU GLN GLN LYS SEQRES 26 A 470 ARG TRP ASP GLU ALA ALA VAL ASN LEU ALA LYS SER ARG SEQRES 27 A 470 TRP TYR ASN GLN THR PRO ASN ARG ALA LYS ARG VAL ILE SEQRES 28 A 470 THR THR PHE ARG THR GLY THR TRP ASP ALA TYR ARG ARG SEQRES 29 A 470 ARG PRO GLY ARG PHE VAL ARG LEU VAL ALA ALA VAL VAL SEQRES 30 A 470 ALA ALA PHE ALA LEU CYS TRP GLY PRO TYR HIS VAL PHE SEQRES 31 A 470 SER LEU LEU GLU ALA ARG ALA HIS ALA ASN PRO GLY LEU SEQRES 32 A 470 ARG PRO LEU VAL TRP ARG GLY LEU PRO PHE VAL THR SER SEQRES 33 A 470 LEU ALA PHE PHE ASN SER VAL ALA ASN PRO VAL LEU TYR SEQRES 34 A 470 VAL LEU THR YCM PRO ASP MET LEU ARG LYS LEU ARG ARG SEQRES 35 A 470 SER LEU ARG THR VAL LEU GLU SER VAL LEU VAL ASP ASP SEQRES 36 A 470 SER GLU LEU GLY GLY ALA GLY SER SER LEU GLU VAL LEU SEQRES 37 A 470 PHE GLN MODRES 6D27 YCM A 2308 CYS MODIFIED RESIDUE HET YCM A2308 10 HET SO4 A2401 5 HET SO4 A2402 5 HET SO4 A2403 5 HET SO4 A2404 5 HET SO4 A2405 5 HET SO4 A2406 5 HET SO4 A2407 5 HET FT4 A2408 29 HET MES A2409 12 HET OLA A2410 20 HET OLA A2411 20 HET PGE A2412 10 HET PGE A2413 10 HET PGO A2414 5 HET PGO A2415 5 HET PGO A2416 5 HET PGO A2417 5 HET PEG A2418 7 HETNAM YCM S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HETNAM SO4 SULFATE ION HETNAM FT4 [(3R)-3-{[(4-FLUOROPHENYL)SULFONYL](METHYL)AMINO}-1,2, HETNAM 2 FT4 3,4-TETRAHYDRO-9H-CARBAZOL-9-YL]ACETIC ACID HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM OLA OLEIC ACID HETNAM PGE TRIETHYLENE GLYCOL HETNAM PGO S-1,2-PROPANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN YCM CYSTEINE-S-ACETAMIDE HETSYN FT4 CAY10471 FORMUL 1 YCM C5 H10 N2 O3 S FORMUL 2 SO4 7(O4 S 2-) FORMUL 9 FT4 C21 H21 F N2 O4 S FORMUL 10 MES C6 H13 N O4 S FORMUL 11 OLA 2(C18 H34 O2) FORMUL 13 PGE 2(C6 H14 O4) FORMUL 15 PGO 4(C3 H8 O2) FORMUL 19 PEG C4 H10 O3 FORMUL 20 HOH *8(H2 O) HELIX 1 AA1 CYS A 11 SER A 18 1 8 HELIX 2 AA2 ASP A 32 ARG A 60 1 29 HELIX 3 AA3 VAL A 65 VAL A 93 1 29 HELIX 4 AA4 THR A 101 ARG A 135 1 35 HELIX 5 AA5 ARG A 135 ARG A 143 1 9 HELIX 6 AA6 THR A 144 THR A 163 1 20 HELIX 7 AA7 THR A 163 PHE A 169 1 7 HELIX 8 AA8 ASP A 194 ALA A 214 1 21 HELIX 9 AA9 PHE A 215 LEU A 1242 1 27 HELIX 10 AB1 ASP A 1271 ASN A 1282 1 12 HELIX 11 AB2 LEU A 1285 LEU A 1292 1 8 HELIX 12 AB3 ASP A 1293 ALA A 1313 1 21 HELIX 13 AB4 PHE A 1315 GLN A 1324 1 10 HELIX 14 AB5 ARG A 1326 LYS A 1336 1 11 HELIX 15 AB6 SER A 1337 THR A 1343 1 7 HELIX 16 AB7 THR A 1343 GLY A 1357 1 15 HELIX 17 AB8 ALA A 1361 ARG A 2240 5 5 HELIX 18 AB9 PHE A 2244 TRP A 2259 1 16 HELIX 19 AC1 TRP A 2259 ALA A 2272 1 14 HELIX 20 AC2 HIS A 2273 ALA A 2274 5 2 HELIX 21 AC3 ASN A 2275 GLY A 2277 5 3 HELIX 22 AC4 LEU A 2278 PHE A 2295 1 18 HELIX 23 AC5 PHE A 2295 THR A 2307 1 13 HELIX 24 AC6 YCM A 2308 LEU A 2327 1 20 SHEET 1 AA1 2 ARG A 170 SER A 174 0 SHEET 2 AA1 2 ILE A 180 TYR A 184 -1 O MET A 181 N ILE A 173 SSBOND 1 CYS A 11 CYS A 199 1555 1555 2.03 SSBOND 2 CYS A 104 CYS A 182 1555 1555 2.03 LINK C THR A2307 N YCM A2308 1555 1555 1.33 LINK C YCM A2308 N PRO A2309 1555 1555 1.34 SITE 1 AC1 9 ARG A1320 GLN A1324 ARG A1326 GLY A2242 SITE 2 AC1 9 ARG A2243 PHE A2244 VAL A2245 ARG A2246 SITE 3 AC1 9 YCM A2308 SITE 1 AC2 7 GLN A 140 LEU A1251 ARG A1349 TRP A1359 SITE 2 AC2 7 ALA A1361 TYR A1362 ARG A2238 SITE 1 AC3 6 THR A 144 VAL A 145 THR A1343 PRO A1344 SITE 2 AC3 6 ASN A1345 ARG A1346 SITE 1 AC4 6 THR A 64 VAL A 65 VAL A 66 ARG A 143 SITE 2 AC4 6 ARG A2243 HOH A2502 SITE 1 AC5 3 ARG A 62 ASP A2310 LYS A2314 SITE 1 AC6 3 GLY A1256 GLY A1257 LYS A1266 SITE 1 AC7 2 ARG A1277 HOH A2504 SITE 1 AC8 10 MET A 17 PHE A 111 ARG A 170 TYR A 183 SITE 2 AC8 10 TYR A 184 TYR A2262 TRP A2283 LEU A2286 SITE 3 AC8 10 THR A2290 PGO A2416 SITE 1 AC9 6 PHE A1315 THR A1316 ASN A1317 SER A1318 SITE 2 AC9 6 ASN A1333 ARG A2239 SITE 1 AD1 3 LEU A 71 HIS A 72 HIS A 149 SITE 1 AD2 2 ASP A 128 ARG A 143 SITE 1 AD3 2 GLU A1249 MET A1250 SITE 1 AD4 5 ARG A2246 YCM A2308 PRO A2309 ASP A2310 SITE 2 AD4 5 ARG A2313 SITE 1 AD5 3 ARG A 175 ARG A 179 FT4 A2408 SITE 1 AD6 4 GLY A 40 LEU A 44 PRO A 85 THR A 88 SITE 1 AD7 3 SER A 109 THR A 163 PHE A 167 CRYST1 52.175 62.636 272.215 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019166 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015965 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003674 0.00000