PDB Short entry for 6D3N
HEADER    SIGNALING PROTEIN                       16-APR-18   6D3N              
TITLE     CRYSTAL STRUCTURE OF H4-1BB LIGAND                                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 9;         
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES 80-244;                                           
COMPND   5 SYNONYM: 4-1BB LIGAND,4-1BBL;                                        
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: TNFSF9;                                                        
SOURCE   6 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1;              
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 266783                                      
KEYWDS    TNF, BELL SHAPE FOLD, SIGNALING PROTEIN                               
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    B.ARUNA,D.M.ZAJONC,T.DOUKOV                                           
REVDAT   2   11-JUL-18 6D3N    1       JRNL                                     
REVDAT   1   09-MAY-18 6D3N    0                                                
JRNL        AUTH   A.BITRA,T.DOUKOV,M.CROFT,D.M.ZAJONC                          
JRNL        TITL   CRYSTAL STRUCTURES OF THE HUMAN 4-1BB RECEPTOR BOUND TO ITS  
JRNL        TITL 2 LIGAND 4-1BBL REVEAL COVALENT RECEPTOR DIMERIZATION AS A     
JRNL        TITL 3 POTENTIAL SIGNALING AMPLIFIER.                               
JRNL        REF    J. BIOL. CHEM.                V. 293  9958 2018              
JRNL        REFN                   ESSN 1083-351X                               
JRNL        PMID   29720398                                                     
JRNL        DOI    10.1074/JBC.RA118.003176                                     
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.70 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.8.0189                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : NULL                                          
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 59.05                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.3                           
REMARK   3   NUMBER OF REFLECTIONS             : 4340                           
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.212                           
REMARK   3   R VALUE            (WORKING SET) : 0.208                           
REMARK   3   FREE R VALUE                     : 0.252                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 9.900                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 475                             
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.70                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.77                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 318                          
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 99.15                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.3210                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 31                           
REMARK   3   BIN FREE R VALUE                    : 0.3370                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 1001                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 6                                       
REMARK   3   SOLVENT ATOMS            : 10                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 77.15                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.08000                                              
REMARK   3    B22 (A**2) : 0.08000                                              
REMARK   3    B33 (A**2) : -0.26000                                             
REMARK   3    B12 (A**2) : 0.04000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 1.124         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.342         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.271         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.755        
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.947                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.907                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  1024 ; 0.008 ; 0.019       
REMARK   3   BOND LENGTHS OTHERS               (A):   963 ; 0.002 ; 0.020       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  1393 ; 1.267 ; 1.966       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  2196 ; 0.853 ; 3.000       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   133 ; 7.590 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):    37 ;37.999 ;22.973       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   143 ;16.486 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):     5 ;12.062 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   170 ; 0.074 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  1139 ; 0.004 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):   214 ; 0.001 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : NULL                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS U VALUES : REFINED INDIVIDUALLY                           
REMARK   4                                                                      
REMARK   4 6D3N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-18.                  
REMARK 100 THE DEPOSITION ID IS D_1000233946.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 13-APR-18                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 5.6                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SSRL                               
REMARK 200  BEAMLINE                       : BL9-2                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.97                               
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : PIXEL                              
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS PILATUS 6M-F               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : IMOSFLM                            
REMARK 200  DATA SCALING SOFTWARE          : SCALA 0.6.3                        
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 4818                               
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.700                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 59.050                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.6                               
REMARK 200  DATA REDUNDANCY                : 9.200                              
REMARK 200  R MERGE                    (I) : 0.09500                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 11.6000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.83                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 99.4                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 8.40                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.85900                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: 6CPR                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 46.27                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.085M TRI- NA CITRATE, PH 5.6, 25.5%    
REMARK 280  PEG 4000 0.17M AMM ACETATE 15% GLYCEROL, VAPOR DIFFUSION,           
REMARK 280  SITTING DROP, TEMPERATURE 295K                                      
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2                            
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -Y,X-Y,Z                                                
REMARK 290       3555   -X+Y,-X,Z                                               
REMARK 290       4555   Y,X,-Z                                                  
REMARK 290       5555   X-Y,-Y,-Z                                               
REMARK 290       6555   -X,-X+Y,-Z                                              
REMARK 290       7555   X+2/3,Y+1/3,Z+1/3                                       
REMARK 290       8555   -Y+2/3,X-Y+1/3,Z+1/3                                    
REMARK 290       9555   -X+Y+2/3,-X+1/3,Z+1/3                                   
REMARK 290      10555   Y+2/3,X+1/3,-Z+1/3                                      
REMARK 290      11555   X-Y+2/3,-Y+1/3,-Z+1/3                                   
REMARK 290      12555   -X+2/3,-X+Y+1/3,-Z+1/3                                  
REMARK 290      13555   X+1/3,Y+2/3,Z+2/3                                       
REMARK 290      14555   -Y+1/3,X-Y+2/3,Z+2/3                                    
REMARK 290      15555   -X+Y+1/3,-X+2/3,Z+2/3                                   
REMARK 290      16555   Y+1/3,X+2/3,-Z+2/3                                      
REMARK 290      17555   X-Y+1/3,-Y+2/3,-Z+2/3                                   
REMARK 290      18555   -X+1/3,-X+Y+2/3,-Z+2/3                                  
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   3 -0.866025 -0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   4 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   4  0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   5  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   5  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   6 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2   6 -0.866025  0.500000  0.000000        0.00000            
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   7  1.000000  0.000000  0.000000       36.58350            
REMARK 290   SMTRY2   7  0.000000  1.000000  0.000000       21.12149            
REMARK 290   SMTRY3   7  0.000000  0.000000  1.000000       54.27133            
REMARK 290   SMTRY1   8 -0.500000 -0.866025  0.000000       36.58350            
REMARK 290   SMTRY2   8  0.866025 -0.500000  0.000000       21.12149            
REMARK 290   SMTRY3   8  0.000000  0.000000  1.000000       54.27133            
REMARK 290   SMTRY1   9 -0.500000  0.866025  0.000000       36.58350            
REMARK 290   SMTRY2   9 -0.866025 -0.500000  0.000000       21.12149            
REMARK 290   SMTRY3   9  0.000000  0.000000  1.000000       54.27133            
REMARK 290   SMTRY1  10 -0.500000  0.866025  0.000000       36.58350            
REMARK 290   SMTRY2  10  0.866025  0.500000  0.000000       21.12149            
REMARK 290   SMTRY3  10  0.000000  0.000000 -1.000000       54.27133            
REMARK 290   SMTRY1  11  1.000000  0.000000  0.000000       36.58350            
REMARK 290   SMTRY2  11  0.000000 -1.000000  0.000000       21.12149            
REMARK 290   SMTRY3  11  0.000000  0.000000 -1.000000       54.27133            
REMARK 290   SMTRY1  12 -0.500000 -0.866025  0.000000       36.58350            
REMARK 290   SMTRY2  12 -0.866025  0.500000  0.000000       21.12149            
REMARK 290   SMTRY3  12  0.000000  0.000000 -1.000000       54.27133            
REMARK 290   SMTRY1  13  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2  13  0.000000  1.000000  0.000000       42.24299            
REMARK 290   SMTRY3  13  0.000000  0.000000  1.000000      108.54267            
REMARK 290   SMTRY1  14 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2  14  0.866025 -0.500000  0.000000       42.24299            
REMARK 290   SMTRY3  14  0.000000  0.000000  1.000000      108.54267            
REMARK 290   SMTRY1  15 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2  15 -0.866025 -0.500000  0.000000       42.24299            
REMARK 290   SMTRY3  15  0.000000  0.000000  1.000000      108.54267            
REMARK 290   SMTRY1  16 -0.500000  0.866025  0.000000        0.00000            
REMARK 290   SMTRY2  16  0.866025  0.500000  0.000000       42.24299            
REMARK 290   SMTRY3  16  0.000000  0.000000 -1.000000      108.54267            
REMARK 290   SMTRY1  17  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2  17  0.000000 -1.000000  0.000000       42.24299            
REMARK 290   SMTRY3  17  0.000000  0.000000 -1.000000      108.54267            
REMARK 290   SMTRY1  18 -0.500000 -0.866025  0.000000        0.00000            
REMARK 290   SMTRY2  18 -0.866025  0.500000  0.000000       42.24299            
REMARK 290   SMTRY3  18  0.000000  0.000000 -1.000000      108.54267            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 4140 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 17600 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   2 -0.500000 -0.866025  0.000000      -36.58350            
REMARK 350   BIOMT2   2  0.866025 -0.500000  0.000000      -63.36448            
REMARK 350   BIOMT3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1   3 -0.500000  0.866025  0.000000       36.58350            
REMARK 350   BIOMT2   3 -0.866025 -0.500000  0.000000      -63.36448            
REMARK 350   BIOMT3   3  0.000000  0.000000  1.000000        0.00000            
REMARK 375                                                                      
REMARK 375 SPECIAL POSITION                                                     
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS            
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL          
REMARK 375 POSITIONS.                                                           
REMARK 375                                                                      
REMARK 375 ATOM RES CSSEQI                                                      
REMARK 375      HOH A 702  LIES ON A SPECIAL POSITION.                          
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     ASP A    80                                                      
REMARK 465     PRO A    81                                                      
REMARK 465     ALA A    82                                                      
REMARK 465     GLY A    83                                                      
REMARK 465     LEU A    84                                                      
REMARK 465     LEU A    85                                                      
REMARK 465     ASP A    86                                                      
REMARK 465     LEU A    87                                                      
REMARK 465     ARG A    88                                                      
REMARK 465     GLN A    89                                                      
REMARK 465     GLY A    90                                                      
REMARK 465     ALA A   116                                                      
REMARK 465     GLY A   117                                                      
REMARK 465     VAL A   118                                                      
REMARK 465     SER A   119                                                      
REMARK 465     LEU A   120                                                      
REMARK 465     THR A   121                                                      
REMARK 465     GLY A   122                                                      
REMARK 465     GLY A   123                                                      
REMARK 465     ALA A   154                                                      
REMARK 465     GLY A   155                                                      
REMARK 465     SER A   189                                                      
REMARK 465     SER A   190                                                      
REMARK 465     GLU A   191                                                      
REMARK 465     ALA A   192                                                      
REMARK 465     PRO A   242                                                      
REMARK 465     GLU A   243                                                      
REMARK 465     ILE A   244                                                      
REMARK 465     HIS A   245                                                      
REMARK 465     HIS A   246                                                      
REMARK 465     HIS A   247                                                      
REMARK 465     HIS A   248                                                      
REMARK 465     HIS A   249                                                      
REMARK 465     HIS A   250                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     MET A  91    CG   SD   CE                                        
REMARK 470     GLU A 128    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 137    CG   CD   CE   NZ                                   
REMARK 470     GLU A 156    CG   CD   OE1  OE2                                  
REMARK 470     GLN A 168    CG   CD   OE1  NE2                                  
REMARK 470     PRO A 169    CG   CD                                             
REMARK 470     ARG A 171    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     ARG A 193    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     ARG A 221    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     ARG A 223    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     HIS A 224    CG   ND1  CD2  CE1  NE2                             
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    GLN A 168     -132.47     45.41                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 601                 
DBREF  6D3N A   80   244  UNP    P41273   TNFL9_HUMAN     80    244             
SEQADV 6D3N HIS A  245  UNP  P41273              EXPRESSION TAG                 
SEQADV 6D3N HIS A  246  UNP  P41273              EXPRESSION TAG                 
SEQADV 6D3N HIS A  247  UNP  P41273              EXPRESSION TAG                 
SEQADV 6D3N HIS A  248  UNP  P41273              EXPRESSION TAG                 
SEQADV 6D3N HIS A  249  UNP  P41273              EXPRESSION TAG                 
SEQADV 6D3N HIS A  250  UNP  P41273              EXPRESSION TAG                 
SEQRES   1 A  171  ASP PRO ALA GLY LEU LEU ASP LEU ARG GLN GLY MET PHE          
SEQRES   2 A  171  ALA GLN LEU VAL ALA GLN ASN VAL LEU LEU ILE ASP GLY          
SEQRES   3 A  171  PRO LEU SER TRP TYR SER ASP PRO GLY LEU ALA GLY VAL          
SEQRES   4 A  171  SER LEU THR GLY GLY LEU SER TYR LYS GLU ASP THR LYS          
SEQRES   5 A  171  GLU LEU VAL VAL ALA LYS ALA GLY VAL TYR TYR VAL PHE          
SEQRES   6 A  171  PHE GLN LEU GLU LEU ARG ARG VAL VAL ALA GLY GLU GLY          
SEQRES   7 A  171  SER GLY SER VAL SER LEU ALA LEU HIS LEU GLN PRO LEU          
SEQRES   8 A  171  ARG SER ALA ALA GLY ALA ALA ALA LEU ALA LEU THR VAL          
SEQRES   9 A  171  ASP LEU PRO PRO ALA SER SER GLU ALA ARG ASN SER ALA          
SEQRES  10 A  171  PHE GLY PHE GLN GLY ARG LEU LEU HIS LEU SER ALA GLY          
SEQRES  11 A  171  GLN ARG LEU GLY VAL HIS LEU HIS THR GLU ALA ARG ALA          
SEQRES  12 A  171  ARG HIS ALA TRP GLN LEU THR GLN GLY ALA THR VAL LEU          
SEQRES  13 A  171  GLY LEU PHE ARG VAL THR PRO GLU ILE HIS HIS HIS HIS          
SEQRES  14 A  171  HIS HIS                                                      
HET    GOL  A 601       6                                                       
HETNAM     GOL GLYCEROL                                                         
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
FORMUL   2  GOL    C3 H8 O3                                                     
FORMUL   3  HOH   *10(H2 O)                                                     
SHEET    1 AA1 5 TRP A 109  SER A 111  0                                        
SHEET    2 AA1 5 PHE A  92  ALA A  97 -1  N  VAL A  96   O  TYR A 110           
SHEET    3 AA1 5 VAL A 234  ARG A 239 -1  O  LEU A 235   N  LEU A  95           
SHEET    4 AA1 5 GLY A 139  ARG A 151 -1  N  PHE A 144   O  GLY A 236           
SHEET    5 AA1 5 SER A 195  LEU A 206 -1  O  LEU A 206   N  GLY A 139           
SHEET    1 AA2 5 TRP A 109  SER A 111  0                                        
SHEET    2 AA2 5 PHE A  92  ALA A  97 -1  N  VAL A  96   O  TYR A 110           
SHEET    3 AA2 5 VAL A 234  ARG A 239 -1  O  LEU A 235   N  LEU A  95           
SHEET    4 AA2 5 GLY A 139  ARG A 151 -1  N  PHE A 144   O  GLY A 236           
SHEET    5 AA2 5 TRP A 226  LEU A 228 -1  O  GLN A 227   N  ARG A 150           
SHEET    1 AA3 4 GLY A 105  PRO A 106  0                                        
SHEET    2 AA3 4 ARG A 211  ALA A 220 -1  O  LEU A 216   N  GLY A 105           
SHEET    3 AA3 4 GLU A 132  VAL A 134 -1  N  LEU A 133   O  LEU A 212           
SHEET    4 AA3 4 SER A 125  LYS A 127 -1  N  SER A 125   O  VAL A 134           
SHEET    1 AA4 4 GLY A 105  PRO A 106  0                                        
SHEET    2 AA4 4 ARG A 211  ALA A 220 -1  O  LEU A 216   N  GLY A 105           
SHEET    3 AA4 4 GLY A 159  LEU A 167 -1  N  SER A 162   O  HIS A 217           
SHEET    4 AA4 4 LEU A 179  LEU A 185 -1  O  LEU A 179   N  LEU A 165           
SITE     1 AC1  1 LEU A 115                                                     
CRYST1   73.167   73.167  162.814  90.00  90.00 120.00 H 3 2        18          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.013667  0.007891  0.000000        0.00000                         
SCALE2      0.000000  0.015782  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.006142        0.00000