PDB Short entry for 6DDA HEADER TRANSCRIPTION 09-MAY-18 6DDA TITLE NURR1 COVALENTLY MODIFIED BY A DOPAMINE METABOLITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 4 GROUP A MEMBER 2; COMPND 3 CHAIN: B, C; COMPND 4 SYNONYM: IMMEDIATE-EARLY RESPONSE PROTEIN NOT,ORPHAN NUCLEAR RECEPTOR COMPND 5 NURR1,TRANSCRIPTIONALLY-INDUCIBLE NUCLEAR RECEPTOR; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 4 GROUP A MEMBER 2; COMPND 9 CHAIN: A; COMPND 10 SYNONYM: IMMEDIATE-EARLY RESPONSE PROTEIN NOT,ORPHAN NUCLEAR RECEPTOR COMPND 11 NURR1,TRANSCRIPTIONALLY-INDUCIBLE NUCLEAR RECEPTOR; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR4A2, NOT, NURR1, TINUR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: NR4A2, NOT, NURR1, TINUR; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NURR1, DOPAMINE, CYSTEINE ADDUCT, DIHYDROXYINDOLE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.M.BRUNING,Y.WANG,F.OTRABELLA,T.BOXUE,H.LIU,P.BHATTACHARYA,S.GUO, AUTHOR 2 J.M.HOLTON,R.J.FLETTERICK,M.P.JACOBSON,P.M.ENGLAND REVDAT 4 06-NOV-19 6DDA 1 REMARK REVDAT 3 29-MAY-19 6DDA 1 JRNL REVDAT 2 01-MAY-19 6DDA 1 JRNL REVDAT 1 20-MAR-19 6DDA 0 JRNL AUTH J.M.BRUNING,Y.WANG,F.OLTRABELLA,B.TIAN,S.A.KHOLODAR,H.LIU, JRNL AUTH 2 P.BHATTACHARYA,S.GUO,J.M.HOLTON,R.J.FLETTERICK,M.P.JACOBSON, JRNL AUTH 3 P.M.ENGLAND JRNL TITL COVALENT MODIFICATION AND REGULATION OF THE NUCLEAR RECEPTOR JRNL TITL 2 NURR1 BY A DOPAMINE METABOLITE. JRNL REF CELL CHEM BIOL V. 26 674 2019 JRNL REFN ESSN 2451-9456 JRNL PMID 30853418 JRNL DOI 10.1016/J.CHEMBIOL.2019.02.002 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 14697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DDA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1158 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14697 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.20100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 202.9MM POTASSIUM REMARK 280 BROMIDE, 18.45% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.26833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 150.53667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 150.53667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.26833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 327 REMARK 465 MET B 328 REMARK 465 VAL B 329 REMARK 465 LYS B 330 REMARK 465 GLU B 331 REMARK 465 VAL B 332 REMARK 465 VAL B 333 REMARK 465 ARG B 334 REMARK 465 THR B 335 REMARK 465 ASP B 336 REMARK 465 SER B 337 REMARK 465 LEU B 338 REMARK 465 LYS B 339 REMARK 465 GLY B 340 REMARK 465 ARG B 341 REMARK 465 ARG B 342 REMARK 465 GLY B 343 REMARK 465 ARG B 344 REMARK 465 LEU B 345 REMARK 465 PRO B 346 REMARK 465 SER B 347 REMARK 465 LYS B 348 REMARK 465 PRO B 349 REMARK 465 LYS B 350 REMARK 465 SER B 351 REMARK 465 PRO B 352 REMARK 465 GLN B 353 REMARK 465 GLU B 354 REMARK 465 PRO B 355 REMARK 465 SER B 356 REMARK 465 PRO B 357 REMARK 465 PRO B 358 REMARK 465 SER B 359 REMARK 465 PRO B 360 REMARK 465 PRO B 361 REMARK 465 VAL B 362 REMARK 465 SER A 327 REMARK 465 MET A 328 REMARK 465 VAL A 329 REMARK 465 LYS A 330 REMARK 465 GLU A 331 REMARK 465 VAL A 332 REMARK 465 VAL A 333 REMARK 465 ARG A 334 REMARK 465 THR A 335 REMARK 465 ASP A 336 REMARK 465 SER A 337 REMARK 465 LEU A 338 REMARK 465 LYS A 339 REMARK 465 GLY A 340 REMARK 465 ARG A 341 REMARK 465 ARG A 342 REMARK 465 GLY A 343 REMARK 465 ARG A 344 REMARK 465 LEU A 345 REMARK 465 PRO A 346 REMARK 465 SER A 347 REMARK 465 LYS A 348 REMARK 465 PRO A 349 REMARK 465 LYS A 350 REMARK 465 SER A 351 REMARK 465 PRO A 352 REMARK 465 GLN A 353 REMARK 465 GLU A 354 REMARK 465 PRO A 355 REMARK 465 SER A 356 REMARK 465 PRO A 357 REMARK 465 PRO A 358 REMARK 465 SER A 359 REMARK 465 PRO A 360 REMARK 465 PRO A 361 REMARK 465 VAL A 362 REMARK 465 TYR A 393 REMARK 465 GLN A 394 REMARK 465 MET A 395 REMARK 465 SER A 396 REMARK 465 GLY A 397 REMARK 465 ASP A 398 REMARK 465 ASN A 542 REMARK 465 ASN A 543 REMARK 465 GLY A 544 REMARK 465 GLY A 545 REMARK 465 LEU A 546 REMARK 465 ASN A 547 REMARK 465 SER C 327 REMARK 465 MET C 328 REMARK 465 VAL C 329 REMARK 465 LYS C 330 REMARK 465 GLU C 331 REMARK 465 VAL C 332 REMARK 465 VAL C 333 REMARK 465 ARG C 334 REMARK 465 THR C 335 REMARK 465 ASP C 336 REMARK 465 SER C 337 REMARK 465 LEU C 338 REMARK 465 LYS C 339 REMARK 465 GLY C 340 REMARK 465 ARG C 341 REMARK 465 ARG C 342 REMARK 465 GLY C 343 REMARK 465 ARG C 344 REMARK 465 LEU C 345 REMARK 465 PRO C 346 REMARK 465 SER C 347 REMARK 465 LYS C 348 REMARK 465 PRO C 349 REMARK 465 LYS C 350 REMARK 465 SER C 351 REMARK 465 PRO C 352 REMARK 465 GLN C 353 REMARK 465 GLU C 354 REMARK 465 PRO C 355 REMARK 465 SER C 356 REMARK 465 PRO C 357 REMARK 465 PRO C 358 REMARK 465 SER C 359 REMARK 465 PRO C 360 REMARK 465 PRO C 361 REMARK 465 VAL C 362 REMARK 465 TYR C 393 REMARK 465 GLN C 394 REMARK 465 MET C 395 REMARK 465 SER C 396 REMARK 465 GLY C 397 REMARK 465 ASP C 398 REMARK 465 ASN C 542 REMARK 465 ASN C 543 REMARK 465 GLY C 544 REMARK 465 GLY C 545 REMARK 465 LEU C 546 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 454 OD1 OCS A 465 1.30 REMARK 500 O VAL B 373 NH2 ARG A 370 2.13 REMARK 500 O GLN B 388 NE2 GLN B 474 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN B 388 O PHE C 387 6455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 566 N CYS B 566 CA -0.145 REMARK 500 CYS B 566 CA CYS B 566 CB -0.125 REMARK 500 CYS A 566 N CYS A 566 CA -0.146 REMARK 500 CYS A 566 CA CYS A 566 CB -0.124 REMARK 500 THR C 564 C LEU C 565 N 0.142 REMARK 500 CYS C 566 N CYS C 566 CA -0.146 REMARK 500 CYS C 566 CA CYS C 566 CB -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET B 379 26.57 -70.65 REMARK 500 TYR B 384 34.53 -92.98 REMARK 500 CYS B 465 6.59 -66.72 REMARK 500 ASN B 495 3.86 -68.97 REMARK 500 MET A 379 13.42 -62.32 REMARK 500 SER A 381 33.28 -158.15 REMARK 500 OCS A 465 10.33 -64.95 REMARK 500 ASN A 495 7.87 -69.64 REMARK 500 GLU A 520 70.64 -116.29 REMARK 500 TYR A 551 -42.80 50.09 REMARK 500 PRO A 597 -8.33 -55.02 REMARK 500 MET C 379 6.66 -64.89 REMARK 500 ALA C 428 1.69 -67.01 REMARK 500 CYS C 465 7.27 -65.46 REMARK 500 ASN C 495 5.49 -65.41 REMARK 500 ASP C 580 28.92 46.89 REMARK 500 VAL C 582 89.23 -151.88 REMARK 500 PRO C 597 -2.24 -59.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR C 564 -10.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 603 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 501 OG REMARK 620 2 SER A 501 OG 134.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G7J B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue G7J A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR C 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide BR C 603 and SER C REMARK 800 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide G7J C 605 and CYS C REMARK 800 566 DBREF 6DDA B 328 598 UNP P43354 NR4A2_HUMAN 265 535 DBREF 6DDA A 328 598 UNP P43354 NR4A2_HUMAN 265 535 DBREF 6DDA C 328 598 UNP P43354 NR4A2_HUMAN 265 535 SEQADV 6DDA SER B 327 UNP P43354 EXPRESSION TAG SEQADV 6DDA SER A 327 UNP P43354 EXPRESSION TAG SEQADV 6DDA SER C 327 UNP P43354 EXPRESSION TAG SEQRES 1 B 272 SER MET VAL LYS GLU VAL VAL ARG THR ASP SER LEU LYS SEQRES 2 B 272 GLY ARG ARG GLY ARG LEU PRO SER LYS PRO LYS SER PRO SEQRES 3 B 272 GLN GLU PRO SER PRO PRO SER PRO PRO VAL SER LEU ILE SEQRES 4 B 272 SER ALA LEU VAL ARG ALA HIS VAL ASP SER ASN PRO ALA SEQRES 5 B 272 MET THR SER LEU ASP TYR SER ARG PHE GLN ALA ASN PRO SEQRES 6 B 272 ASP TYR GLN MET SER GLY ASP ASP THR GLN HIS ILE GLN SEQRES 7 B 272 GLN PHE TYR ASP LEU LEU THR GLY SER MET GLU ILE ILE SEQRES 8 B 272 ARG GLY TRP ALA GLU LYS ILE PRO GLY PHE ALA ASP LEU SEQRES 9 B 272 PRO LYS ALA ASP GLN ASP LEU LEU PHE GLU SER ALA PHE SEQRES 10 B 272 LEU GLU LEU PHE VAL LEU ARG LEU ALA TYR ARG SER ASN SEQRES 11 B 272 PRO VAL GLU GLY LYS LEU ILE PHE CYS ASN GLY VAL VAL SEQRES 12 B 272 LEU HIS ARG LEU GLN CYS VAL ARG GLY PHE GLY GLU TRP SEQRES 13 B 272 ILE ASP SER ILE VAL GLU PHE SER SER ASN LEU GLN ASN SEQRES 14 B 272 MET ASN ILE ASP ILE SER ALA PHE SER CYS ILE ALA ALA SEQRES 15 B 272 LEU ALA MET VAL THR GLU ARG HIS GLY LEU LYS GLU PRO SEQRES 16 B 272 LYS ARG VAL GLU GLU LEU GLN ASN LYS ILE VAL ASN CYS SEQRES 17 B 272 LEU LYS ASP HIS VAL THR PHE ASN ASN GLY GLY LEU ASN SEQRES 18 B 272 ARG PRO ASN TYR LEU SER LYS LEU LEU GLY LYS LEU PRO SEQRES 19 B 272 GLU LEU ARG THR LEU CYS THR GLN GLY LEU GLN ARG ILE SEQRES 20 B 272 PHE TYR LEU LYS LEU GLU ASP LEU VAL PRO PRO PRO ALA SEQRES 21 B 272 ILE ILE ASP LYS LEU PHE LEU ASP THR LEU PRO PHE SEQRES 1 A 272 SER MET VAL LYS GLU VAL VAL ARG THR ASP SER LEU LYS SEQRES 2 A 272 GLY ARG ARG GLY ARG LEU PRO SER LYS PRO LYS SER PRO SEQRES 3 A 272 GLN GLU PRO SER PRO PRO SER PRO PRO VAL SER LEU ILE SEQRES 4 A 272 SER ALA LEU VAL ARG ALA HIS VAL ASP SER ASN PRO ALA SEQRES 5 A 272 MET THR SER LEU ASP TYR SER ARG PHE GLN ALA ASN PRO SEQRES 6 A 272 ASP TYR GLN MET SER GLY ASP ASP THR GLN HIS ILE GLN SEQRES 7 A 272 GLN PHE TYR ASP LEU LEU THR GLY SER MET GLU ILE ILE SEQRES 8 A 272 ARG GLY TRP ALA GLU LYS ILE PRO GLY PHE ALA ASP LEU SEQRES 9 A 272 PRO LYS ALA ASP GLN ASP LEU LEU PHE GLU SER ALA PHE SEQRES 10 A 272 LEU GLU LEU PHE VAL LEU ARG LEU ALA TYR ARG SER ASN SEQRES 11 A 272 PRO VAL GLU GLY LYS LEU ILE PHE OCS ASN GLY VAL VAL SEQRES 12 A 272 LEU HIS ARG LEU GLN CYS VAL ARG GLY PHE GLY GLU TRP SEQRES 13 A 272 ILE ASP SER ILE VAL GLU PHE SER SER ASN LEU GLN ASN SEQRES 14 A 272 MET ASN ILE ASP ILE SER ALA PHE SER CYS ILE ALA ALA SEQRES 15 A 272 LEU ALA MET VAL THR GLU ARG HIS GLY LEU LYS GLU PRO SEQRES 16 A 272 LYS ARG VAL GLU GLU LEU GLN ASN LYS ILE VAL ASN CYS SEQRES 17 A 272 LEU LYS ASP HIS VAL THR PHE ASN ASN GLY GLY LEU ASN SEQRES 18 A 272 ARG PRO ASN TYR LEU SER LYS LEU LEU GLY LYS LEU PRO SEQRES 19 A 272 GLU LEU ARG THR LEU CYS THR GLN GLY LEU GLN ARG ILE SEQRES 20 A 272 PHE TYR LEU LYS LEU GLU ASP LEU VAL PRO PRO PRO ALA SEQRES 21 A 272 ILE ILE ASP LYS LEU PHE LEU ASP THR LEU PRO PHE SEQRES 1 C 272 SER MET VAL LYS GLU VAL VAL ARG THR ASP SER LEU LYS SEQRES 2 C 272 GLY ARG ARG GLY ARG LEU PRO SER LYS PRO LYS SER PRO SEQRES 3 C 272 GLN GLU PRO SER PRO PRO SER PRO PRO VAL SER LEU ILE SEQRES 4 C 272 SER ALA LEU VAL ARG ALA HIS VAL ASP SER ASN PRO ALA SEQRES 5 C 272 MET THR SER LEU ASP TYR SER ARG PHE GLN ALA ASN PRO SEQRES 6 C 272 ASP TYR GLN MET SER GLY ASP ASP THR GLN HIS ILE GLN SEQRES 7 C 272 GLN PHE TYR ASP LEU LEU THR GLY SER MET GLU ILE ILE SEQRES 8 C 272 ARG GLY TRP ALA GLU LYS ILE PRO GLY PHE ALA ASP LEU SEQRES 9 C 272 PRO LYS ALA ASP GLN ASP LEU LEU PHE GLU SER ALA PHE SEQRES 10 C 272 LEU GLU LEU PHE VAL LEU ARG LEU ALA TYR ARG SER ASN SEQRES 11 C 272 PRO VAL GLU GLY LYS LEU ILE PHE CYS ASN GLY VAL VAL SEQRES 12 C 272 LEU HIS ARG LEU GLN CYS VAL ARG GLY PHE GLY GLU TRP SEQRES 13 C 272 ILE ASP SER ILE VAL GLU PHE SER SER ASN LEU GLN ASN SEQRES 14 C 272 MET ASN ILE ASP ILE SER ALA PHE SER CYS ILE ALA ALA SEQRES 15 C 272 LEU ALA MET VAL THR GLU ARG HIS GLY LEU LYS GLU PRO SEQRES 16 C 272 LYS ARG VAL GLU GLU LEU GLN ASN LYS ILE VAL ASN CYS SEQRES 17 C 272 LEU LYS ASP HIS VAL THR PHE ASN ASN GLY GLY LEU ASN SEQRES 18 C 272 ARG PRO ASN TYR LEU SER LYS LEU LEU GLY LYS LEU PRO SEQRES 19 C 272 GLU LEU ARG THR LEU CYS THR GLN GLY LEU GLN ARG ILE SEQRES 20 C 272 PHE TYR LEU LYS LEU GLU ASP LEU VAL PRO PRO PRO ALA SEQRES 21 C 272 ILE ILE ASP LYS LEU PHE LEU ASP THR LEU PRO PHE MODRES 6DDA OCS A 465 CYS MODIFIED RESIDUE HET OCS A 465 9 HET K B 601 1 HET G7J B 602 17 HET K B 603 1 HET BR A 601 1 HET BR A 602 1 HET BR A 603 1 HET BR A 604 1 HET K A 605 1 HET K A 606 1 HET G7J A 607 17 HET BR C 601 1 HET BR C 602 1 HET BR C 603 1 HET K C 604 1 HET G7J C 605 17 HETNAM OCS CYSTEINESULFONIC ACID HETNAM K POTASSIUM ION HETNAM G7J 5-HYDROXY-1,2-DIHYDRO-6H-INDOL-6-ONE HETNAM BR BROMIDE ION FORMUL 2 OCS C3 H7 N O5 S FORMUL 4 K 5(K 1+) FORMUL 5 G7J 3(C8 H7 N O2) FORMUL 7 BR 7(BR 1-) HELIX 1 AA1 SER B 363 SER B 375 1 13 HELIX 2 AA2 ASN B 390 SER B 396 1 7 HELIX 3 AA3 ASP B 398 LYS B 423 1 26 HELIX 4 AA4 GLY B 426 LEU B 430 5 5 HELIX 5 AA5 PRO B 431 SER B 455 1 25 HELIX 6 AA6 ASN B 456 GLU B 459 5 4 HELIX 7 AA7 ARG B 472 GLY B 480 1 9 HELIX 8 AA8 GLU B 481 ASN B 495 1 15 HELIX 9 AA9 ASP B 499 VAL B 512 1 14 HELIX 10 AB1 GLU B 520 ASN B 543 1 24 HELIX 11 AB2 ARG B 548 ASP B 580 1 33 HELIX 12 AB3 PRO B 585 LEU B 596 1 12 HELIX 13 AB4 LEU A 364 SER A 375 1 12 HELIX 14 AB5 THR A 400 LYS A 423 1 24 HELIX 15 AB6 GLY A 426 LEU A 430 5 5 HELIX 16 AB7 PRO A 431 SER A 455 1 25 HELIX 17 AB8 ARG A 472 GLY A 480 1 9 HELIX 18 AB9 GLY A 480 ASN A 495 1 16 HELIX 19 AC1 ASP A 499 VAL A 512 1 14 HELIX 20 AC2 GLU A 520 PHE A 541 1 22 HELIX 21 AC3 TYR A 551 ASP A 580 1 30 HELIX 22 AC4 PRO A 585 LEU A 596 1 12 HELIX 23 AC5 LEU C 364 SER C 375 1 12 HELIX 24 AC6 THR C 400 LYS C 423 1 24 HELIX 25 AC7 GLY C 426 LEU C 430 5 5 HELIX 26 AC8 PRO C 431 SER C 455 1 25 HELIX 27 AC9 ARG C 472 GLY C 480 1 9 HELIX 28 AD1 GLU C 481 ASN C 495 1 15 HELIX 29 AD2 ASP C 499 VAL C 512 1 14 HELIX 30 AD3 GLU C 520 PHE C 541 1 22 HELIX 31 AD4 ARG C 548 GLY C 557 1 10 HELIX 32 AD5 GLY C 557 ASP C 580 1 24 HELIX 33 AD6 PRO C 585 LEU C 596 1 12 SHEET 1 AA1 2 LYS B 461 ILE B 463 0 SHEET 2 AA1 2 VAL B 469 HIS B 471 -1 O LEU B 470 N LEU B 462 SHEET 1 AA2 2 LYS A 461 ILE A 463 0 SHEET 2 AA2 2 VAL A 469 HIS A 471 -1 O LEU A 470 N LEU A 462 SHEET 1 AA3 2 LYS C 461 ILE C 463 0 SHEET 2 AA3 2 VAL C 469 HIS C 471 -1 O LEU C 470 N LEU C 462 LINK OG SER B 501 K K B 603 1555 1555 3.11 LINK SG CYS B 566 C2 G7J B 602 1555 1555 1.88 LINK C PHE A 464 N OCS A 465 1555 1555 1.33 LINK C OCS A 465 N ASN A 466 1555 1555 1.32 LINK OG SER A 501 K K B 603 1555 1555 2.83 LINK SG CYS A 566 C2 G7J A 607 1555 1555 1.88 LINK SG CYS C 566 C2 G7J C 605 1555 1555 1.88 LINK OG SER C 501 BR BR C 603 1555 5555 1.92 SITE 1 AC1 3 BR A 601 MET B 379 THR B 380 SITE 1 AC2 4 GLU B 445 ARG B 563 CYS B 566 THR B 595 SITE 1 AC3 4 SER A 501 HIS A 538 ILE B 500 SER B 501 SITE 1 AC4 3 SER A 366 ARG A 370 K B 601 SITE 1 AC5 2 ARG A 418 ASP A 436 SITE 1 AC6 2 MET A 379 ARG B 370 SITE 1 AC7 1 ARG A 572 SITE 1 AC8 1 HIS A 538 SITE 1 AC9 6 SER A 441 GLU A 445 ARG A 515 ARG A 563 SITE 2 AC9 6 CYS A 566 THR A 595 SITE 1 AD1 2 ALA C 367 BR C 602 SITE 1 AD2 3 ARG C 370 MET C 379 BR C 601 SITE 1 AD3 1 ASP C 399 SITE 1 AD4 7 ASP C 499 ILE C 500 ALA C 502 PHE C 503 SITE 2 AD4 7 SER C 504 CYS C 505 HIS C 538 SITE 1 AD5 12 LEU C 444 GLU C 445 ARG C 515 LEU C 562 SITE 2 AD5 12 ARG C 563 THR C 564 LEU C 565 THR C 567 SITE 3 AD5 12 GLN C 568 GLY C 569 LEU C 570 THR C 595 CRYST1 80.586 80.586 225.805 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012409 0.007164 0.000000 0.00000 SCALE2 0.000000 0.014329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004429 0.00000