PDB Short entry for 6DF3 HEADER CYTOKINE 14-MAY-18 6DF3 TITLE CRYSTAL STRUCTURE OF TERNARY COMPLEX OF IL-24 WITH SOLUBLE RECEPTORS TITLE 2 IL-22RA AND IL-20RB COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-22 RECEPTOR SUBUNIT ALPHA-1; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: UNP RESIDUES 24-228; COMPND 5 SYNONYM: IL-22RA1, CYTOKINE RECEPTOR CLASS-II MEMBER 9, CYTOKINE COMPND 6 RECEPTOR FAMILY 2 MEMBER 9, CRF2-9, ZCYTOR11; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: INTERLEUKIN-24; COMPND 10 CHAIN: C; COMPND 11 FRAGMENT: UNP RESIDUES 52-206; COMPND 12 SYNONYM: IL-24, MELANOMA DIFFERENTIATION-ASSOCIATED GENE 7 PROTEIN, COMPND 13 MDA-7, SUPPRESSION OF TUMORIGENICITY 16 PROTEIN; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: INTERLEUKIN-20 RECEPTOR SUBUNIT BETA; COMPND 18 CHAIN: H; COMPND 19 FRAGMENT: UNP RESIDUES 35-224; COMPND 20 SYNONYM: IL-20RB, FIBRONECTIN TYPE III DOMAIN CONTAINING 6, FNDC6, COMPND 21 IL-20R2; COMPND 22 ENGINEERED: YES; COMPND 23 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IL22RA1, IL22R; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: IL24, MDA7, ST16; SOURCE 14 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 GENE: IL20RB, DIRS1, UNQ557/PRO1114; SOURCE 22 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 23 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 7227 KEYWDS CYTOKINE, TERNARY COMPLEX, CELL SIGNALING, JAK-STAT PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,A.WLODAWER REVDAT 5 11-OCT-23 6DF3 1 HETSYN REVDAT 4 29-JUL-20 6DF3 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 03-OCT-18 6DF3 1 JRNL REVDAT 2 29-AUG-18 6DF3 1 JRNL REVDAT 1 15-AUG-18 6DF3 0 JRNL AUTH J.LUBKOWSKI,C.SONMEZ,S.V.SMIRNOV,A.ANISHKIN,S.V.KOTENKO, JRNL AUTH 2 A.WLODAWER JRNL TITL CRYSTAL STRUCTURE OF THE LABILE COMPLEX OF IL-24 WITH THE JRNL TITL 2 EXTRACELLULAR DOMAINS OF IL-22R1 AND IL-20R2. JRNL REF J. IMMUNOL. V. 201 2082 2018 JRNL REFN ESSN 1550-6606 JRNL PMID 30111632 JRNL DOI 10.4049/JIMMUNOL.1800726 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 37897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1978 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2738 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4395 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.75000 REMARK 3 B22 (A**2) : 1.75000 REMARK 3 B33 (A**2) : -3.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.072 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4563 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4172 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6200 ; 2.018 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9684 ; 1.080 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 539 ; 7.899 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;33.478 ;23.575 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 769 ;17.224 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;18.073 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 701 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4950 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 950 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 24 L 303 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2815 5.2394 54.6311 REMARK 3 T TENSOR REMARK 3 T11: 0.4123 T22: 0.1529 REMARK 3 T33: 0.0730 T12: 0.1965 REMARK 3 T13: 0.0735 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 8.5034 L22: 2.0997 REMARK 3 L33: 1.9004 L12: 1.2500 REMARK 3 L13: 2.9351 L23: 0.3930 REMARK 3 S TENSOR REMARK 3 S11: 0.4345 S12: 0.3300 S13: -0.2751 REMARK 3 S21: -0.6579 S22: -0.4019 S23: -0.1270 REMARK 3 S31: 0.4571 S32: 0.2220 S33: -0.0327 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 52 C 206 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2312 23.3804 52.0204 REMARK 3 T TENSOR REMARK 3 T11: 0.0988 T22: 0.0621 REMARK 3 T33: 0.0521 T12: 0.0436 REMARK 3 T13: -0.0572 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 2.5118 L22: 3.6917 REMARK 3 L33: 6.7343 L12: -0.4496 REMARK 3 L13: 2.2657 L23: -1.2297 REMARK 3 S TENSOR REMARK 3 S11: 0.2419 S12: 0.3228 S13: -0.0220 REMARK 3 S21: -0.4795 S22: 0.0108 S23: 0.2320 REMARK 3 S31: 0.3521 S32: 0.2674 S33: -0.2527 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 35 H 224 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9997 26.9685 79.3283 REMARK 3 T TENSOR REMARK 3 T11: 0.0995 T22: 0.2821 REMARK 3 T33: 0.1617 T12: -0.0122 REMARK 3 T13: -0.0140 T23: -0.1528 REMARK 3 L TENSOR REMARK 3 L11: 6.6190 L22: 2.6818 REMARK 3 L33: 2.7858 L12: -0.3699 REMARK 3 L13: 1.3552 L23: 0.5334 REMARK 3 S TENSOR REMARK 3 S11: 0.1205 S12: -0.6762 S13: -0.0926 REMARK 3 S21: 0.2361 S22: 0.3312 S23: -0.4775 REMARK 3 S31: 0.0523 S32: 0.5364 S33: -0.4518 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6DF3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234501. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 - 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39903 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4DOH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8 MG/ML PROTEIN IN 0.2 M SODIUM REMARK 280 CHLORIDE, 0.05 M HEPES AGAINST 215 W/V MEPEG2000, 0.05 M TRIS, REMARK 280 PH 8.5, 0.05 M TRIMETHYLAMINE N-OXIDE DIHYDRATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.39250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.58875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.19625 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, C, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY L 44 REMARK 465 PRO L 45 REMARK 465 GLU L 46 REMARK 465 GLY L 47 REMARK 465 GLY L 102 REMARK 465 GLY L 103 REMARK 465 ARG L 104 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER L 105 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN C 201 O2 GOL C 302 2.13 REMARK 500 OD2 ASP L 162 OG1 THR L 207 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 102 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG C 168 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 LEU C 186 CA - CB - CG ANGL. DEV. = 22.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 150 70.30 46.34 REMARK 500 ASN L 172 -130.61 47.88 REMARK 500 THR C 119 -62.05 -108.06 REMARK 500 ALA H 59 63.27 -157.01 REMARK 500 THR H 79 58.73 -146.63 REMARK 500 PRO H 95 37.99 -84.30 REMARK 500 LEU H 117 64.74 -158.77 REMARK 500 GLN H 120 108.07 -59.25 REMARK 500 MET H 143 130.19 -177.80 REMARK 500 PRO H 174 -51.32 -29.83 REMARK 500 ALA H 176 153.02 -44.38 REMARK 500 REMARK 500 REMARK: NULL DBREF 6DF3 L 24 228 UNP Q8N6P7 I22R1_HUMAN 24 228 DBREF 6DF3 C 52 206 UNP Q13007 IL24_HUMAN 52 206 DBREF 6DF3 H 35 224 UNP Q6UXL0 I20RB_HUMAN 35 224 SEQADV 6DF3 GLY L 229 UNP Q8N6P7 EXPRESSION TAG SEQADV 6DF3 GLN C 85 UNP Q13007 ASN 85 ENGINEERED MUTATION SEQADV 6DF3 GLN C 99 UNP Q13007 ASN 99 ENGINEERED MUTATION SEQADV 6DF3 HIS C 124 UNP Q13007 TYR 124 CONFLICT SEQADV 6DF3 GLN C 126 UNP Q13007 ASN 126 ENGINEERED MUTATION SEQADV 6DF3 GLN H 134 UNP Q6UXL0 ASN 134 ENGINEERED MUTATION SEQADV 6DF3 GLU H 206 UNP Q6UXL0 GLN 206 CONFLICT SEQRES 1 L 206 LEU LEU GLN HIS VAL LYS PHE GLN SER SER ASN PHE GLU SEQRES 2 L 206 ASN ILE LEU THR TRP ASP SER GLY PRO GLU GLY THR PRO SEQRES 3 L 206 ASP THR VAL TYR SER ILE GLU TYR LYS THR TYR GLY GLU SEQRES 4 L 206 ARG ASP TRP VAL ALA LYS LYS GLY CYS GLN ARG ILE THR SEQRES 5 L 206 ARG LYS SER CYS ASN LEU THR VAL GLU THR GLY ASN LEU SEQRES 6 L 206 THR GLU LEU TYR TYR ALA ARG VAL THR ALA VAL SER ALA SEQRES 7 L 206 GLY GLY ARG SER ALA THR LYS MET THR ASP ARG PHE SER SEQRES 8 L 206 SER LEU GLN HIS THR THR LEU LYS PRO PRO ASP VAL THR SEQRES 9 L 206 CYS ILE SER LYS VAL ARG SER ILE GLN MET ILE VAL HIS SEQRES 10 L 206 PRO THR PRO THR PRO ILE ARG ALA GLY ASP GLY HIS ARG SEQRES 11 L 206 LEU THR LEU GLU ASP ILE PHE HIS ASP LEU PHE TYR HIS SEQRES 12 L 206 LEU GLU LEU GLN VAL ASN ARG THR TYR GLN MET HIS LEU SEQRES 13 L 206 GLY GLY LYS GLN ARG GLU TYR GLU PHE PHE GLY LEU THR SEQRES 14 L 206 PRO ASP THR GLU PHE LEU GLY THR ILE MET ILE CYS VAL SEQRES 15 L 206 PRO THR TRP ALA LYS GLU SER ALA PRO TYR MET CYS ARG SEQRES 16 L 206 VAL LYS THR LEU PRO ASP ARG THR TRP THR GLY SEQRES 1 C 155 GLN GLU PHE HIS PHE GLY PRO CYS GLN VAL LYS GLY VAL SEQRES 2 C 155 VAL PRO GLN LYS LEU TRP GLU ALA PHE TRP ALA VAL LYS SEQRES 3 C 155 ASP THR MET GLN ALA GLN ASP GLN ILE THR SER ALA ARG SEQRES 4 C 155 LEU LEU GLN GLN GLU VAL LEU GLN GLN VAL SER ASP ALA SEQRES 5 C 155 GLU SER CYS TYR LEU VAL HIS THR LEU LEU GLU PHE TYR SEQRES 6 C 155 LEU LYS THR VAL PHE LYS ASN HIS HIS GLN ARG THR VAL SEQRES 7 C 155 GLU VAL ARG THR LEU LYS SER PHE SER THR LEU ALA ASN SEQRES 8 C 155 ASN PHE VAL LEU ILE VAL SER GLN LEU GLN PRO SER GLN SEQRES 9 C 155 GLU ASN GLU MET PHE SER ILE ARG ASP SER ALA HIS ARG SEQRES 10 C 155 ARG PHE LEU LEU PHE ARG ARG ALA PHE LYS GLN LEU ASP SEQRES 11 C 155 VAL GLU ALA ALA LEU THR LYS ALA LEU GLY GLU VAL ASP SEQRES 12 C 155 ILE LEU LEU THR TRP MET GLN LYS PHE TYR LYS LEU SEQRES 1 H 190 LEU PRO ALA PRO GLN ASN LEU SER VAL LEU SER THR ASN SEQRES 2 H 190 MET LYS HIS LEU LEU MET TRP SER PRO VAL ILE ALA PRO SEQRES 3 H 190 GLY GLU THR VAL TYR TYR SER VAL GLU TYR GLN GLY GLU SEQRES 4 H 190 TYR GLU SER LEU TYR THR SER HIS ILE TRP ILE PRO SER SEQRES 5 H 190 SER TRP CYS SER LEU THR GLU GLY PRO GLU CYS ASP VAL SEQRES 6 H 190 THR ASP ASP ILE THR ALA THR VAL PRO TYR ASN LEU ARG SEQRES 7 H 190 VAL ARG ALA THR LEU GLY SER GLN THR SER ALA TRP SER SEQRES 8 H 190 ILE LEU LYS HIS PRO PHE ASN ARG GLN SER THR ILE LEU SEQRES 9 H 190 THR ARG PRO GLY MET GLU ILE THR LYS ASP GLY PHE HIS SEQRES 10 H 190 LEU VAL ILE GLU LEU GLU ASP LEU GLY PRO GLN PHE GLU SEQRES 11 H 190 PHE LEU VAL ALA TYR TRP ARG ARG GLU PRO GLY ALA GLU SEQRES 12 H 190 GLU HIS VAL LYS MET VAL ARG SER GLY GLY ILE PRO VAL SEQRES 13 H 190 HIS LEU GLU THR MET GLU PRO GLY ALA ALA TYR CYS VAL SEQRES 14 H 190 LYS ALA GLU THR PHE VAL LYS ALA ILE GLY ARG TYR SER SEQRES 15 H 190 ALA PHE SER GLN THR GLU CYS VAL HET NAG A 1 14 HET NAG A 2 14 HET NAG L 303 14 HET GOL C 301 6 HET GOL C 302 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 NAG 3(C8 H15 N O6) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *80(H2 O) HELIX 1 AA1 SER L 114 THR L 119 1 6 HELIX 2 AA2 LEU L 156 PHE L 160 1 5 HELIX 3 AA3 PRO L 206 ALA L 209 5 4 HELIX 4 AA4 VAL C 65 ASP C 84 1 20 HELIX 5 AA5 GLN C 93 GLN C 98 1 6 HELIX 6 AA6 SER C 101 THR C 119 1 19 HELIX 7 AA7 THR C 119 THR C 128 1 10 HELIX 8 AA8 GLU C 130 GLN C 150 1 21 HELIX 9 AA9 GLU C 156 GLU C 158 5 3 HELIX 10 AB1 MET C 159 GLN C 179 1 21 HELIX 11 AB2 ASP C 181 GLU C 192 1 12 HELIX 12 AB3 GLU C 192 GLN C 201 1 10 HELIX 13 AB4 GLY H 72 THR H 79 1 8 HELIX 14 AB5 THR H 100 ILE H 103 5 4 HELIX 15 AB6 GLN H 134 THR H 136 5 3 SHEET 1 AA1 3 GLN L 26 SER L 33 0 SHEET 2 AA1 3 GLU L 36 ASP L 42 -1 O ASP L 42 N GLN L 26 SHEET 3 AA1 3 SER L 78 ASN L 80 -1 O CYS L 79 N LEU L 39 SHEET 1 AA2 4 VAL L 66 ALA L 67 0 SHEET 2 AA2 4 THR L 51 THR L 59 -1 N TYR L 57 O VAL L 66 SHEET 3 AA2 4 TYR L 92 SER L 100 -1 O THR L 97 N SER L 54 SHEET 4 AA2 4 ALA L 106 MET L 109 -1 O ALA L 106 N ALA L 98 SHEET 1 AA3 3 VAL L 126 SER L 130 0 SHEET 2 AA3 3 ILE L 135 VAL L 139 -1 O GLN L 136 N ILE L 129 SHEET 3 AA3 3 GLU L 185 PHE L 188 -1 O TYR L 186 N MET L 137 SHEET 1 AA4 2 PRO L 143 ARG L 147 0 SHEET 2 AA4 2 ARG L 153 THR L 155 -1 O LEU L 154 N ILE L 146 SHEET 1 AA5 4 TYR L 175 GLY L 181 0 SHEET 2 AA5 4 PHE L 164 VAL L 171 -1 N LEU L 167 O LEU L 179 SHEET 3 AA5 4 GLU L 196 VAL L 205 -1 O CYS L 204 N PHE L 164 SHEET 4 AA5 4 LYS L 210 GLU L 211 -1 O LYS L 210 N VAL L 205 SHEET 1 AA6 4 TYR L 175 GLY L 181 0 SHEET 2 AA6 4 PHE L 164 VAL L 171 -1 N LEU L 167 O LEU L 179 SHEET 3 AA6 4 GLU L 196 VAL L 205 -1 O CYS L 204 N PHE L 164 SHEET 4 AA6 4 TYR L 215 LYS L 220 -1 O CYS L 217 N GLY L 199 SHEET 1 AA7 3 CYS C 59 VAL C 61 0 SHEET 2 AA7 3 GLU C 53 PHE C 56 -1 N PHE C 54 O VAL C 61 SHEET 3 AA7 3 TYR C 204 LYS C 205 -1 O LYS C 205 N GLU C 53 SHEET 1 AA8 3 SER H 42 THR H 46 0 SHEET 2 AA8 3 LYS H 49 MET H 53 -1 O LEU H 51 N LEU H 44 SHEET 3 AA8 3 GLU H 96 ASP H 98 -1 O CYS H 97 N LEU H 52 SHEET 1 AA9 4 ILE H 84 PRO H 85 0 SHEET 2 AA9 4 TYR H 65 GLN H 71 -1 N TYR H 70 O ILE H 84 SHEET 3 AA9 4 PRO H 108 LEU H 117 -1 O THR H 116 N TYR H 65 SHEET 4 AA9 4 SER H 125 ILE H 126 -1 O SER H 125 N VAL H 113 SHEET 1 AB1 3 GLN H 120 THR H 121 0 SHEET 2 AB1 3 PRO H 108 LEU H 117 -1 N LEU H 117 O GLN H 120 SHEET 3 AB1 3 PHE H 131 ASN H 132 -1 O PHE H 131 N TYR H 109 SHEET 1 AB2 3 MET H 143 ASP H 148 0 SHEET 2 AB2 3 HIS H 151 LEU H 156 -1 O VAL H 153 N THR H 146 SHEET 3 AB2 3 VAL H 190 THR H 194 -1 O GLU H 193 N LEU H 152 SHEET 1 AB3 4 HIS H 179 VAL H 183 0 SHEET 2 AB3 4 GLU H 164 ARG H 171 -1 N TYR H 169 O HIS H 179 SHEET 3 AB3 4 TYR H 201 PHE H 208 -1 O PHE H 208 N GLU H 164 SHEET 4 AB3 4 GLU H 222 CYS H 223 -1 O GLU H 222 N VAL H 203 SSBOND 1 CYS L 128 CYS L 217 1555 1555 2.19 SSBOND 2 CYS C 59 CYS C 106 1555 1555 2.71 SSBOND 3 CYS H 89 CYS H 97 1555 1555 2.03 SSBOND 4 CYS H 202 CYS H 223 1555 1555 2.06 LINK ND2 ASN L 80 C1 NAG A 1 1555 1555 1.46 LINK ND2 ASN L 87 C1 NAG L 303 1555 1555 1.44 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.46 CRYST1 77.702 77.702 124.785 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012870 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008014 0.00000