PDB Short entry for 6E28 HEADER SIGNALING PROTEIN 10-JUL-18 6E28 TITLE THE CARD9 CARD DOMAIN-SWAPPED DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 9; COMPND 3 CHAIN: C, D; COMPND 4 FRAGMENT: RESIDUES 2-97; COMPND 5 SYNONYM: HCARD9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CARD9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CARD, INNATE IMMUNITY, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.HOLLIDAY,R.FERRAO,G.BOENIG,E.C.DEUBER,W.J.FAIRBROTHER REVDAT 2 07-NOV-18 6E28 1 JRNL REVDAT 1 26-SEP-18 6E28 0 JRNL AUTH M.J.HOLLIDAY,R.FERRAO,G.DE LEON BOENIG,A.ESTEVEZ,E.HELGASON, JRNL AUTH 2 A.ROHOU,E.C.DUEBER,W.J.FAIRBROTHER JRNL TITL PICOMOLAR ZINC BINDING MODULATES FORMATION OF JRNL TITL 2 BCL10-NUCLEATING ASSEMBLIES OF THE CASPASE RECRUITMENT JRNL TITL 3 DOMAIN (CARD) OF CARD9. JRNL REF J. BIOL. CHEM. V. 293 16803 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30206119 JRNL DOI 10.1074/JBC.RA118.004821 REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12-2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 37558 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.330 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1238 - 3.2774 0.99 2731 154 0.1551 0.1580 REMARK 3 2 3.2774 - 2.6015 1.00 2672 150 0.1848 0.2128 REMARK 3 3 2.6015 - 2.2726 0.99 2638 148 0.1671 0.1775 REMARK 3 4 2.2726 - 2.0649 0.99 2619 148 0.1775 0.1893 REMARK 3 5 2.0649 - 1.9169 0.99 2640 148 0.1825 0.2051 REMARK 3 6 1.9169 - 1.8038 0.99 2618 148 0.2004 0.2392 REMARK 3 7 1.8038 - 1.7135 0.99 2631 147 0.2059 0.2251 REMARK 3 8 1.7135 - 1.6389 0.98 2579 146 0.2064 0.2424 REMARK 3 9 1.6389 - 1.5758 0.98 2579 144 0.2110 0.2297 REMARK 3 10 1.5758 - 1.5214 0.98 2583 145 0.2172 0.2394 REMARK 3 11 1.5214 - 1.4739 0.98 2577 146 0.2250 0.2784 REMARK 3 12 1.4739 - 1.4317 0.98 2573 145 0.2494 0.2812 REMARK 3 13 1.4317 - 1.3940 0.87 2287 128 0.2980 0.3523 REMARK 3 14 1.3940 - 1.3600 0.70 1831 103 0.3831 0.3450 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1558 REMARK 3 ANGLE : 1.011 2123 REMARK 3 CHIRALITY : 0.077 245 REMARK 3 PLANARITY : 0.007 271 REMARK 3 DIHEDRAL : 24.887 601 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 2 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6869 -2.2046 -34.7471 REMARK 3 T TENSOR REMARK 3 T11: 0.1931 T22: 0.2323 REMARK 3 T33: 0.3180 T12: 0.0043 REMARK 3 T13: -0.0251 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 5.1993 L22: 3.3449 REMARK 3 L33: 1.9312 L12: 2.0480 REMARK 3 L13: 0.2580 L23: -1.2303 REMARK 3 S TENSOR REMARK 3 S11: -0.0464 S12: 0.6679 S13: -0.2153 REMARK 3 S21: 0.0180 S22: 0.2534 S23: 0.1131 REMARK 3 S31: -0.1904 S32: -0.3444 S33: -0.2004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 25 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3078 7.8938 -24.2573 REMARK 3 T TENSOR REMARK 3 T11: 0.2281 T22: 0.2330 REMARK 3 T33: 0.2130 T12: -0.0513 REMARK 3 T13: 0.0121 T23: -0.0519 REMARK 3 L TENSOR REMARK 3 L11: 6.9234 L22: 3.1837 REMARK 3 L33: 3.5563 L12: -2.0191 REMARK 3 L13: -2.2982 L23: 2.6216 REMARK 3 S TENSOR REMARK 3 S11: 0.0905 S12: -0.1043 S13: 0.2577 REMARK 3 S21: -0.1518 S22: 0.4083 S23: -0.5897 REMARK 3 S31: -0.4258 S32: 0.5043 S33: -0.5551 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 54 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8614 18.1524 -6.7858 REMARK 3 T TENSOR REMARK 3 T11: 0.1745 T22: 0.1400 REMARK 3 T33: 0.1086 T12: -0.0054 REMARK 3 T13: 0.0221 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 3.9973 L22: 3.4166 REMARK 3 L33: 4.2030 L12: 0.0650 REMARK 3 L13: -0.3439 L23: -0.1639 REMARK 3 S TENSOR REMARK 3 S11: 0.2015 S12: -0.1271 S13: 0.0946 REMARK 3 S21: 0.0391 S22: -0.1150 S23: -0.1422 REMARK 3 S31: -0.4592 S32: 0.0903 S33: -0.0460 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 8 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3519 19.3720 0.4935 REMARK 3 T TENSOR REMARK 3 T11: 0.2746 T22: 0.2301 REMARK 3 T33: 0.1722 T12: 0.0271 REMARK 3 T13: 0.0234 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 4.4907 L22: 4.1556 REMARK 3 L33: 2.6465 L12: 1.0482 REMARK 3 L13: -0.7436 L23: 1.6910 REMARK 3 S TENSOR REMARK 3 S11: 0.1417 S12: -0.4762 S13: 0.3283 REMARK 3 S21: 0.3933 S22: 0.0931 S23: -0.1357 REMARK 3 S31: -0.2467 S32: 0.1199 S33: -0.2124 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 25 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2759 14.4163 -15.2284 REMARK 3 T TENSOR REMARK 3 T11: 0.2187 T22: 0.1708 REMARK 3 T33: 0.1945 T12: -0.0123 REMARK 3 T13: 0.0352 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 4.3129 L22: 3.3587 REMARK 3 L33: 4.9197 L12: -0.4624 REMARK 3 L13: -4.3928 L23: 1.6281 REMARK 3 S TENSOR REMARK 3 S11: -0.1901 S12: 0.1547 S13: -0.1762 REMARK 3 S21: -0.2107 S22: 0.0720 S23: -0.0455 REMARK 3 S31: -0.0373 S32: -0.0691 S33: 0.1040 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 37 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4727 8.7156 -11.9114 REMARK 3 T TENSOR REMARK 3 T11: 0.3045 T22: 0.2371 REMARK 3 T33: 0.3004 T12: 0.0326 REMARK 3 T13: 0.0976 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 4.1894 L22: 5.5391 REMARK 3 L33: 2.6332 L12: 4.7241 REMARK 3 L13: 0.3856 L23: -0.2661 REMARK 3 S TENSOR REMARK 3 S11: -0.2220 S12: 0.0370 S13: -0.7802 REMARK 3 S21: -0.6836 S22: -0.2709 S23: -0.8563 REMARK 3 S31: 0.5206 S32: 0.3801 S33: 0.5017 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 42 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9707 4.2538 -12.4863 REMARK 3 T TENSOR REMARK 3 T11: 0.2256 T22: 0.1948 REMARK 3 T33: 0.2746 T12: -0.0382 REMARK 3 T13: 0.0194 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 2.2597 L22: 5.4753 REMARK 3 L33: 4.4430 L12: 3.5532 REMARK 3 L13: 0.3262 L23: 0.6280 REMARK 3 S TENSOR REMARK 3 S11: -0.3109 S12: 0.4762 S13: -0.5721 REMARK 3 S21: -0.2069 S22: 0.4474 S23: -0.6408 REMARK 3 S31: 0.1893 S32: 0.1411 S33: -0.0399 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 54 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8016 6.5349 -24.9083 REMARK 3 T TENSOR REMARK 3 T11: 0.1495 T22: 0.1457 REMARK 3 T33: 0.1659 T12: 0.0042 REMARK 3 T13: -0.0070 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 8.1201 L22: 6.8267 REMARK 3 L33: 3.4857 L12: 2.1873 REMARK 3 L13: -4.8663 L23: -3.1950 REMARK 3 S TENSOR REMARK 3 S11: 0.2837 S12: -0.1363 S13: -0.0368 REMARK 3 S21: 0.1184 S22: -0.1558 S23: 0.2060 REMARK 3 S31: -0.4281 S32: -0.1861 S33: -0.2085 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 72 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8241 -2.4773 -32.7679 REMARK 3 T TENSOR REMARK 3 T11: 0.1910 T22: 0.1799 REMARK 3 T33: 0.2302 T12: 0.0364 REMARK 3 T13: -0.0281 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 6.1462 L22: 2.7547 REMARK 3 L33: 8.2913 L12: -1.5624 REMARK 3 L13: 1.8592 L23: -4.4747 REMARK 3 S TENSOR REMARK 3 S11: 0.1508 S12: 0.1311 S13: -0.2730 REMARK 3 S21: 0.0020 S22: -0.0271 S23: -0.3549 REMARK 3 S31: 0.2396 S32: 0.3643 S33: 0.0033 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 87 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4190 -10.8754 -27.8495 REMARK 3 T TENSOR REMARK 3 T11: 0.2990 T22: 0.1969 REMARK 3 T33: 0.3267 T12: -0.0051 REMARK 3 T13: -0.0503 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 3.0970 L22: 4.2232 REMARK 3 L33: 8.6337 L12: 3.2412 REMARK 3 L13: 3.3078 L23: 5.3970 REMARK 3 S TENSOR REMARK 3 S11: 0.2616 S12: -0.0265 S13: -0.5023 REMARK 3 S21: 0.3526 S22: -0.2914 S23: 0.0600 REMARK 3 S31: 1.0424 S32: -0.0861 S33: -0.0486 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E28 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000233276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOV. 1, 2016 REMARK 200 DATA SCALING SOFTWARE : XSCALE NOV. 1, 2016 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37569 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 43.102 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 8.560 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.0 REMARK 200 STARTING MODEL: 4LWD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M AMMONIUM TARTRATE DIBASIC, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.71500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 1 REMARK 465 GLY D 1 REMARK 465 SER D 2 REMARK 465 ASP D 3 REMARK 465 TYR D 4 REMARK 465 GLU D 5 REMARK 465 ASN D 6 REMARK 465 ASP D 7 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 92 CD CE NZ REMARK 470 GLU D 15 CG CD OE1 OE2 REMARK 470 GLU D 46 CG CD OE1 OE2 REMARK 470 LYS D 97 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG C 59 O HOH C 101 1.21 REMARK 500 HZ1 LYS D 58 O HOH D 101 1.40 REMARK 500 HH21 ARG D 59 O HOH D 102 1.52 REMARK 500 HE ARG C 18 O HOH C 102 1.55 REMARK 500 O HOH C 174 O HOH D 160 1.88 REMARK 500 O HOH D 104 O HOH D 140 2.00 REMARK 500 O HOH D 147 O HOH D 161 2.00 REMARK 500 NH2 ARG C 59 O HOH C 101 2.03 REMARK 500 OE1 GLU C 15 NH1 ARG C 18 2.06 REMARK 500 O HOH D 125 O HOH D 140 2.07 REMARK 500 NZ LYS D 58 O HOH D 101 2.13 REMARK 500 NE ARG C 18 O HOH C 102 2.15 REMARK 500 O HOH C 106 O HOH C 110 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 130 O HOH D 166 2554 2.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 6E28 C 2 97 UNP Q9H257 CARD9_HUMAN 2 97 DBREF 6E28 D 2 97 UNP Q9H257 CARD9_HUMAN 2 97 SEQADV 6E28 GLY C 1 UNP Q9H257 EXPRESSION TAG SEQADV 6E28 GLY D 1 UNP Q9H257 EXPRESSION TAG SEQRES 1 C 97 GLY SER ASP TYR GLU ASN ASP ASP GLU CYS TRP SER VAL SEQRES 2 C 97 LEU GLU GLY PHE ARG VAL THR LEU THR SER VAL ILE ASP SEQRES 3 C 97 PRO SER ARG ILE THR PRO TYR LEU ARG GLN CYS LYS VAL SEQRES 4 C 97 LEU ASN PRO ASP ASP GLU GLU GLN VAL LEU SER ASP PRO SEQRES 5 C 97 ASN LEU VAL ILE ARG LYS ARG LYS VAL GLY VAL LEU LEU SEQRES 6 C 97 ASP ILE LEU GLN ARG THR GLY HIS LYS GLY TYR VAL ALA SEQRES 7 C 97 PHE LEU GLU SER LEU GLU LEU TYR TYR PRO GLN LEU TYR SEQRES 8 C 97 LYS LYS VAL THR GLY LYS SEQRES 1 D 97 GLY SER ASP TYR GLU ASN ASP ASP GLU CYS TRP SER VAL SEQRES 2 D 97 LEU GLU GLY PHE ARG VAL THR LEU THR SER VAL ILE ASP SEQRES 3 D 97 PRO SER ARG ILE THR PRO TYR LEU ARG GLN CYS LYS VAL SEQRES 4 D 97 LEU ASN PRO ASP ASP GLU GLU GLN VAL LEU SER ASP PRO SEQRES 5 D 97 ASN LEU VAL ILE ARG LYS ARG LYS VAL GLY VAL LEU LEU SEQRES 6 D 97 ASP ILE LEU GLN ARG THR GLY HIS LYS GLY TYR VAL ALA SEQRES 7 D 97 PHE LEU GLU SER LEU GLU LEU TYR TYR PRO GLN LEU TYR SEQRES 8 D 97 LYS LYS VAL THR GLY LYS FORMUL 3 HOH *153(H2 O) HELIX 1 AA1 GLU C 9 GLU C 15 1 7 HELIX 2 AA2 PHE C 17 ILE C 25 1 9 HELIX 3 AA3 ASP C 26 ARG C 29 5 4 HELIX 4 AA4 ILE C 30 CYS C 37 1 8 HELIX 5 AA5 ASN C 41 SER C 50 1 10 HELIX 6 AA6 ASN C 53 ARG C 70 1 18 HELIX 7 AA7 GLY C 72 TYR C 87 1 16 HELIX 8 AA8 TYR C 87 GLY C 96 1 10 HELIX 9 AA9 GLU D 9 GLU D 15 1 7 HELIX 10 AB1 PHE D 17 ILE D 25 1 9 HELIX 11 AB2 ASP D 26 ARG D 29 5 4 HELIX 12 AB3 ILE D 30 CYS D 37 1 8 HELIX 13 AB4 ASN D 41 SER D 50 1 10 HELIX 14 AB5 ASN D 53 ARG D 70 1 18 HELIX 15 AB6 GLY D 72 TYR D 87 1 16 HELIX 16 AB7 TYR D 87 GLY D 96 1 10 CRYST1 43.980 37.430 56.880 90.00 101.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022738 0.000000 0.004612 0.00000 SCALE2 0.000000 0.026717 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017939 0.00000