PDB Short entry for 6E33 HEADER TRANSCRIPTION 13-JUL-18 6E33 TITLE CRYSTAL STRUCTURE OF PHO7-DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED TRANSCRIPTIONAL REGULATORY PROTEIN COMPND 3 C27B12.11C; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 279-339; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*TP*CP*CP*TP*TP*CP*GP*GP*AP*CP*AP*TP*TP*CP*AP*AP*AP*TP*CP*A)-3'); COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*GP*AP*TP*TP*TP*GP*AP*AP*TP*GP*TP*CP*CP*GP*AP*AP*GP*GP*AP*T)-3'); COMPND 15 CHAIN: B; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 3 24843); SOURCE 4 ORGANISM_COMMON: FISSION YEAST; SOURCE 5 ORGANISM_TAXID: 284812; SOURCE 6 STRAIN: 972 / ATCC 24843; SOURCE 7 GENE: PI067, SPBC27B12.11C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 13 ORGANISM_TAXID: 4896; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 17 ORGANISM_TAXID: 4896 KEYWDS ZN2CYS6, ZINC BINUCLEAR CLUSTER TRANSCRIPTION FACTOR, TRANSCRIPTION KEYWDS 2 FACTOR-DNA COMPLEX, PHO7, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.GARG,Y.GOLDGUR,S.SHUMAN REVDAT 5 13-MAR-24 6E33 1 REMARK REVDAT 4 04-DEC-19 6E33 1 REMARK REVDAT 3 19-DEC-18 6E33 1 JRNL REVDAT 2 21-NOV-18 6E33 1 TITLE REMARK DBREF HELIX REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 24-OCT-18 6E33 0 JRNL AUTH A.GARG,Y.GOLDGUR,B.SCHWER,S.SHUMAN JRNL TITL DISTINCTIVE STRUCTURAL BASIS FOR DNA RECOGNITION BY THE JRNL TITL 2 FISSION YEAST ZN2CYS6 TRANSCRIPTION FACTOR PHO7 AND ITS ROLE JRNL TITL 3 IN PHOSPHATE HOMEOSTASIS. JRNL REF NUCLEIC ACIDS RES. V. 46 11262 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30212894 JRNL DOI 10.1093/NAR/GKY827 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 24060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.660 REMARK 3 FREE R VALUE TEST SET COUNT : 1121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1452 - 3.4087 0.90 2762 145 0.1518 0.1919 REMARK 3 2 3.4087 - 2.7057 0.92 2789 126 0.2041 0.2175 REMARK 3 3 2.7057 - 2.3637 0.98 2960 153 0.1992 0.2201 REMARK 3 4 2.3637 - 2.1476 0.99 2954 149 0.1953 0.2223 REMARK 3 5 2.1476 - 1.9937 0.98 2940 132 0.2095 0.2199 REMARK 3 6 1.9937 - 1.8761 0.99 2967 130 0.2101 0.2578 REMARK 3 7 1.8761 - 1.7822 0.98 2932 153 0.2167 0.2283 REMARK 3 8 1.7822 - 1.7046 0.88 2635 133 0.2593 0.3019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1377 REMARK 3 ANGLE : 0.886 2018 REMARK 3 CHIRALITY : 0.048 221 REMARK 3 PLANARITY : 0.007 120 REMARK 3 DIHEDRAL : 25.024 708 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6320 -0.3961 35.2697 REMARK 3 T TENSOR REMARK 3 T11: 0.1406 T22: 0.1271 REMARK 3 T33: 0.1058 T12: -0.0188 REMARK 3 T13: 0.0238 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 4.4228 L22: 6.0281 REMARK 3 L33: 4.1676 L12: -1.2151 REMARK 3 L13: 0.2013 L23: -0.5980 REMARK 3 S TENSOR REMARK 3 S11: -0.1727 S12: -0.1647 S13: -0.0716 REMARK 3 S21: -0.0456 S22: 0.2255 S23: -0.0097 REMARK 3 S31: -0.0105 S32: -0.0280 S33: -0.0683 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5444 7.8081 38.9707 REMARK 3 T TENSOR REMARK 3 T11: 0.2733 T22: 0.2367 REMARK 3 T33: 0.2025 T12: 0.0791 REMARK 3 T13: 0.0558 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 1.6299 L22: 3.5097 REMARK 3 L33: 8.9227 L12: -1.3324 REMARK 3 L13: 2.4752 L23: -4.1275 REMARK 3 S TENSOR REMARK 3 S11: -0.1798 S12: -0.0982 S13: -0.0031 REMARK 3 S21: 0.3109 S22: 0.4134 S23: 0.2621 REMARK 3 S31: -1.0682 S32: -1.0279 S33: -0.3381 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.5192 -6.3753 60.3340 REMARK 3 T TENSOR REMARK 3 T11: 0.2853 T22: 0.1800 REMARK 3 T33: 0.1815 T12: 0.0328 REMARK 3 T13: -0.0058 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.9425 L22: 0.8720 REMARK 3 L33: 4.5604 L12: 0.4303 REMARK 3 L13: -0.3082 L23: 0.1442 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: -0.3417 S13: -0.1724 REMARK 3 S21: 0.4708 S22: 0.0680 S23: -0.1138 REMARK 3 S31: 0.2485 S32: -0.0385 S33: -0.0153 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2791 -3.8376 23.3186 REMARK 3 T TENSOR REMARK 3 T11: 0.2179 T22: 0.6445 REMARK 3 T33: 0.4633 T12: -0.1098 REMARK 3 T13: -0.1478 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 3.6044 L22: 6.9099 REMARK 3 L33: 7.7002 L12: 0.0811 REMARK 3 L13: 1.3708 L23: 2.8854 REMARK 3 S TENSOR REMARK 3 S11: 0.3013 S12: 0.7420 S13: -0.3899 REMARK 3 S21: -0.6223 S22: 0.0751 S23: 0.2197 REMARK 3 S31: -0.8619 S32: 0.0379 S33: -0.0048 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.4775 -7.9771 51.4916 REMARK 3 T TENSOR REMARK 3 T11: 0.1532 T22: 0.1462 REMARK 3 T33: 0.2017 T12: 0.0207 REMARK 3 T13: 0.0356 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.8611 L22: 1.5808 REMARK 3 L33: 5.3062 L12: 0.3833 REMARK 3 L13: 0.7411 L23: -0.4822 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: -0.0932 S13: -0.1058 REMARK 3 S21: 0.0774 S22: 0.1420 S23: -0.0808 REMARK 3 S31: 0.0284 S32: 0.1928 S33: -0.1937 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3943 -6.4603 56.3650 REMARK 3 T TENSOR REMARK 3 T11: 0.1582 T22: 0.2568 REMARK 3 T33: 0.1592 T12: 0.0199 REMARK 3 T13: 0.0378 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 8.0524 L22: 2.1731 REMARK 3 L33: 4.6815 L12: -0.1915 REMARK 3 L13: 4.1110 L23: -1.0226 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: 0.1289 S13: -0.1582 REMARK 3 S21: 0.0985 S22: 0.0878 S23: -0.2470 REMARK 3 S31: -0.0538 S32: 0.5865 S33: -0.1291 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9497 -8.2542 28.1289 REMARK 3 T TENSOR REMARK 3 T11: 0.2539 T22: 0.4120 REMARK 3 T33: 0.2880 T12: -0.0881 REMARK 3 T13: -0.0311 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 5.0995 L22: 0.8310 REMARK 3 L33: 4.0367 L12: 0.4890 REMARK 3 L13: 3.4034 L23: 0.2684 REMARK 3 S TENSOR REMARK 3 S11: 0.2486 S12: 0.2205 S13: -0.5772 REMARK 3 S21: -0.1440 S22: 0.0001 S23: 0.2966 REMARK 3 S31: 0.4132 S32: -0.8046 S33: -0.2363 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235639. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2827, 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24169 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL PH 7.0, 0.2M NAOAC, 32.5% PEG REMARK 280 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.34100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 337 REMARK 465 LEU A 338 REMARK 465 SER A 339 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 575 O HOH A 588 1.91 REMARK 500 OP2 DT B 3 O HOH B 101 2.00 REMARK 500 O HOH B 118 O HOH B 150 2.00 REMARK 500 O HOH A 531 O HOH A 575 2.00 REMARK 500 O HOH A 510 O HOH A 593 2.04 REMARK 500 O HOH C 135 O HOH C 170 2.07 REMARK 500 O HOH C 186 O HOH C 191 2.12 REMARK 500 O HOH A 565 O HOH A 571 2.14 REMARK 500 O HOH A 562 O HOH A 573 2.16 REMARK 500 O HOH C 101 O HOH C 143 2.17 REMARK 500 O HOH A 531 O HOH A 588 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 585 O HOH A 606 2756 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 8 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 292 SG REMARK 620 2 CYS A 308 SG 96.3 REMARK 620 3 CYS A 311 SG 110.3 102.6 REMARK 620 4 CYS A 318 SG 112.1 114.0 119.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 292 SG REMARK 620 2 CYS A 295 SG 105.6 REMARK 620 3 CYS A 302 SG 112.7 116.5 REMARK 620 4 CYS A 308 SG 96.8 111.5 111.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 DBREF 6E33 A 279 339 UNP O13658 YBCB_SCHPO 279 339 DBREF 6E33 C 1 20 PDB 6E33 6E33 1 20 DBREF 6E33 B 1 20 PDB 6E33 6E33 1 20 SEQRES 1 A 61 GLY LYS VAL LYS LYS ARG LEU PRO GLN ALA LYS ARG ALA SEQRES 2 A 61 CYS ALA LYS CYS GLN LYS ASP ASN LYS LYS CYS ASP ASP SEQRES 3 A 61 ALA ARG PRO CYS GLN ARG CYS ILE LYS ALA LYS THR ASP SEQRES 4 A 61 CYS ILE ASP LEU PRO ARG LYS LYS ARG PRO THR GLY VAL SEQRES 5 A 61 ARG ARG GLY PRO TYR LYS LYS LEU SER SEQRES 1 C 20 DT DC DC DT DT DC DG DG DA DC DA DT DT SEQRES 2 C 20 DC DA DA DA DT DC DA SEQRES 1 B 20 DG DA DT DT DT DG DA DA DT DG DT DC DC SEQRES 2 B 20 DG DA DA DG DG DA DT HET ZN A 401 1 HET ZN A 402 1 HETNAM ZN ZINC ION FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *269(H2 O) HELIX 1 AA1 CYS A 292 ASN A 299 1 8 HELIX 2 AA2 CYS A 308 LYS A 315 1 8 LINK SG CYS A 292 ZN ZN A 401 1555 1555 2.37 LINK SG CYS A 292 ZN ZN A 402 1555 1555 2.42 LINK SG CYS A 295 ZN ZN A 402 1555 1555 2.29 LINK SG CYS A 302 ZN ZN A 402 1555 1555 2.39 LINK SG CYS A 308 ZN ZN A 401 1555 1555 2.43 LINK SG CYS A 308 ZN ZN A 402 1555 1555 2.36 LINK SG CYS A 311 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 318 ZN ZN A 401 1555 1555 2.25 CISPEP 1 ARG A 306 PRO A 307 0 4.52 SITE 1 AC1 5 CYS A 292 CYS A 308 CYS A 311 CYS A 318 SITE 2 AC1 5 ZN A 402 SITE 1 AC2 5 CYS A 292 CYS A 295 CYS A 302 CYS A 308 SITE 2 AC2 5 ZN A 401 CRYST1 50.827 40.682 58.237 90.00 105.84 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019675 0.000000 0.005583 0.00000 SCALE2 0.000000 0.024581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017849 0.00000