PDB Short entry for 6E8Y
HEADER    OXIDOREDUCTASE                          31-JUL-18   6E8Y              
TITLE     UNLIGANDED HUMAN GLYCEROL 3-PHOSPHATE DEHYDROGENASE                   
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: GLYCEROL-3-PHOSPHATE DEHYDROGENASE [NAD(+)], CYTOPLASMIC;  
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 SYNONYM: GPDH-C;                                                     
COMPND   5 EC: 1.1.1.8;                                                         
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: GPD1;                                                          
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    OXIDOREDUCTASE                                                        
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    L.S.MYDY,A.M.GULICK                                                   
REVDAT   3   18-DEC-19 6E8Y    1       REMARK                                   
REVDAT   2   13-MAR-19 6E8Y    1       JRNL                                     
REVDAT   1   30-JAN-19 6E8Y    0                                                
JRNL        AUTH   L.S.MYDY,J.R.CRISTOBAL,R.D.KATIGBAK,P.BAUER,A.C.REYES,       
JRNL        AUTH 2 S.C.L.KAMERLIN,J.P.RICHARD,A.M.GULICK                        
JRNL        TITL   HUMAN GLYCEROL 3-PHOSPHATE DEHYDROGENASE: X-RAY CRYSTAL      
JRNL        TITL 2 STRUCTURES THAT GUIDE THE INTERPRETATION OF MUTAGENESIS      
JRNL        TITL 3 STUDIES.                                                     
JRNL        REF    BIOCHEMISTRY                  V.  58  1061 2019              
JRNL        REFN                   ISSN 1520-4995                               
JRNL        PMID   30640445                                                     
JRNL        DOI    10.1021/ACS.BIOCHEM.8B01103                                  
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.85 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (1.12_2829)                                   
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : NULL                                          
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 47.48                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 0.090                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 90.5                           
REMARK   3   NUMBER OF REFLECTIONS             : 51727                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.172                           
REMARK   3   R VALUE            (WORKING SET) : 0.170                           
REMARK   3   FREE R VALUE                     : 0.210                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.820                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 4461                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 49.0295 -  5.7456    0.96     3055   205  0.1680 0.1705        
REMARK   3     2  5.7456 -  4.5615    0.95     3139   108  0.1436 0.1773        
REMARK   3     3  4.5615 -  3.9852    0.97     3126   167  0.1274 0.1671        
REMARK   3     4  3.9852 -  3.6209    0.96     3155   153  0.1342 0.1817        
REMARK   3     5  3.6209 -  3.3615    0.93     3051    98  0.1472 0.1827        
REMARK   3     6  3.3615 -  3.1633    0.91     2883   184  0.1585 0.1965        
REMARK   3     7  3.1633 -  3.0049    0.92     3025   127  0.1636 0.2018        
REMARK   3     8  3.0049 -  2.8741    0.92     2955   205  0.1604 0.2186        
REMARK   3     9  2.8741 -  2.7635    0.92     2974   150  0.1732 0.2156        
REMARK   3    10  2.7635 -  2.6682    0.93     2996   147  0.1727 0.2139        
REMARK   3    11  2.6682 -  2.5847    0.93     3064   128  0.1765 0.2187        
REMARK   3    12  2.5847 -  2.5108    0.92     3054   110  0.1758 0.1921        
REMARK   3    13  2.5108 -  2.4448    0.92     2948   180  0.1755 0.2162        
REMARK   3    14  2.4448 -  2.3851    0.90     2887   143  0.1807 0.2297        
REMARK   3    15  2.3851 -  2.3309    0.90     2914   175  0.1919 0.2223        
REMARK   3    16  2.3309 -  2.2813    0.89     2902   146  0.1899 0.2609        
REMARK   3    17  2.2813 -  2.2357    0.87     2857   105  0.1864 0.2041        
REMARK   3    18  2.2357 -  2.1935    0.89     2847   157  0.1875 0.2311        
REMARK   3    19  2.1935 -  2.1543    0.89     2904   133  0.1941 0.2728        
REMARK   3    20  2.1543 -  2.1178    0.90     2907   148  0.2005 0.2464        
REMARK   3    21  2.1178 -  2.0836    0.89     2883   164  0.2109 0.2446        
REMARK   3    22  2.0836 -  2.0516    0.90     2911   145  0.1981 0.2770        
REMARK   3    23  2.0516 -  2.0214    0.90     2888   149  0.2069 0.2546        
REMARK   3    24  2.0214 -  1.9929    0.89     2912   137  0.2208 0.2641        
REMARK   3    25  1.9929 -  1.9660    0.89     2907   143  0.2262 0.2772        
REMARK   3    26  1.9660 -  1.9404    0.89     2835   144  0.2334 0.2656        
REMARK   3    27  1.9404 -  1.9162    0.89     2885   178  0.2357 0.2884        
REMARK   3    28  1.9162 -  1.8931    0.86     2781   171  0.2608 0.3147        
REMARK   3    29  1.8931 -  1.8711    0.85     2773   122  0.2708 0.3020        
REMARK   3    30  1.8711 -  1.8501    0.82     2643   139  0.2832 0.2989        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : NULL                                          
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.220            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.390           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 23.51                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 27.39                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.011           5192                                  
REMARK   3   ANGLE     :  1.048           7032                                  
REMARK   3   CHIRALITY :  0.056            819                                  
REMARK   3   PLANARITY :  0.007            911                                  
REMARK   3   DIHEDRAL  : 13.441           3106                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 6E8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-18.                  
REMARK 100 THE DEPOSITION ID IS D_1000235792.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 08-APR-17                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 23-ID-B                            
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0332                             
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : PIXEL                              
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS EIGER X 16M                
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.1                       
REMARK 200  DATA SCALING SOFTWARE          : AIMLESS                            
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 51748                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.850                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 47.480                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.4                               
REMARK 200  DATA REDUNDANCY                : 3.200                              
REMARK 200  R MERGE                    (I) : 0.07400                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 8.0000                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.92                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 97.6                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 3.00                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.31400                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: 6E8Z                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 40.13                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 175 MM POTASSIUM CHLORIDE, 23% PEG       
REMARK 280  20000, 0.1M BIS-TRIS PROPANE PH 7.0; 10 MG/ML, VAPOR DIFFUSION,     
REMARK 280  HANGING DROP, TEMPERATURE 287K                                      
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       38.08000            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 4250 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 25060 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     GLY A    46                                                      
REMARK 465     GLY A    47                                                      
REMARK 465     LYS A    48                                                      
REMARK 465     LYS A    49                                                      
REMARK 465     MET B     1                                                      
REMARK 465     ASP B   123                                                      
REMARK 465     GLU B   124                                                      
REMARK 465     GLY B   125                                                      
REMARK 465     PRO B   126                                                      
REMARK 465     ASN B   127                                                      
REMARK 465     GLY B   128                                                      
REMARK 465     GLY B   294                                                      
REMARK 465     GLN B   295                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     ASP A  44    CG   OD1  OD2                                       
REMARK 470     ILE A  45    CG1  CG2  CD1                                       
REMARK 470     THR A  51    OG1  CG2                                            
REMARK 470     GLU A  52    CG   CD   OE1  OE2                                  
REMARK 470     THR A  56    OG1  CG2                                            
REMARK 470     GLU A  59    CG   CD   OE1  OE2                                  
REMARK 470     VAL A  61    CG1  CG2                                            
REMARK 470     LYS A  68    CG   CD   CE   NZ                                   
REMARK 470     GLN A  81    CG   CD   OE1  NE2                                  
REMARK 470     LYS A 100    CG   CD   CE   NZ                                   
REMARK 470     GLU A 124    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 160    CE   NZ                                             
REMARK 470     LYS A 169    CG   CD   CE   NZ                                   
REMARK 470     GLN A 192    CG   CD   OE1  NE2                                  
REMARK 470     GLU A 285    CG   CD   OE1  OE2                                  
REMARK 470     GLN A 286    CG   CD   OE1  NE2                                  
REMARK 470     LYS A 289    CG   CD   CE   NZ                                   
REMARK 470     LYS B 130    CG   CD   CE   NZ                                   
REMARK 470     LYS B 169    CG   CD   CE   NZ                                   
REMARK 470     LYS B 289    CG   CD   CE   NZ                                   
REMARK 470     ASN B 293    CG   OD1  ND2                                       
REMARK 470     LYS B 296    CG   CD   CE   NZ                                   
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    SER A  11       32.61   -157.89                                   
REMARK 500    ASP A  44      -74.02    -45.15                                   
REMARK 500    THR A  56      -71.21    -74.89                                   
REMARK 500    ASN A  72        5.97    -68.33                                   
REMARK 500    VAL A  92       58.52   -145.81                                   
REMARK 500    SER B  11       19.43   -156.63                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500    ARG A 304         0.09    SIDE CHAIN                              
REMARK 500    ARG B 304         0.15    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                               K A 403   K                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ALA A  26   O                                                      
REMARK 620 2 ALA A  27   O    74.4                                              
REMARK 620 3 LEU A  29   O    80.8 103.3                                        
REMARK 620 4 PHE A  32   O    84.1 158.3  75.5                                  
REMARK 620 5 HOH A 573   O   139.1  73.1 130.6 124.5                            
REMARK 620 N                    1     2     3     4                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                               K B 401   K                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ALA B  26   O                                                      
REMARK 620 2 ALA B  27   O    74.6                                              
REMARK 620 3 LEU B  29   O    82.4 101.2                                        
REMARK 620 4 PHE B  32   O    75.3 149.6  78.9                                  
REMARK 620 5 HOH B 613   O   141.8 142.4  94.8  66.8                            
REMARK 620 6 HOH B 651   O   132.5  64.9  82.2 143.5  84.2                      
REMARK 620 7 HOH B 535   O   112.1  64.2 153.6 125.2  86.9  71.7                
REMARK 620 N                    1     2     3     4     5     6                 
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue 3SY A 402                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue K A 403                   
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue K B 401                   
DBREF  6E8Y A    1   349  UNP    P21695   GPDA_HUMAN       1    349             
DBREF  6E8Y B    1   349  UNP    P21695   GPDA_HUMAN       1    349             
SEQRES   1 A  349  MET ALA SER LYS LYS VAL CYS ILE VAL GLY SER GLY ASN          
SEQRES   2 A  349  TRP GLY SER ALA ILE ALA LYS ILE VAL GLY GLY ASN ALA          
SEQRES   3 A  349  ALA GLN LEU ALA GLN PHE ASP PRO ARG VAL THR MET TRP          
SEQRES   4 A  349  VAL PHE GLU GLU ASP ILE GLY GLY LYS LYS LEU THR GLU          
SEQRES   5 A  349  ILE ILE ASN THR GLN HIS GLU ASN VAL LYS TYR LEU PRO          
SEQRES   6 A  349  GLY HIS LYS LEU PRO PRO ASN VAL VAL ALA VAL PRO ASP          
SEQRES   7 A  349  VAL VAL GLN ALA ALA GLU ASP ALA ASP ILE LEU ILE PHE          
SEQRES   8 A  349  VAL VAL PRO HIS GLN PHE ILE GLY LYS ILE CYS ASP GLN          
SEQRES   9 A  349  LEU LYS GLY HIS LEU LYS ALA ASN ALA THR GLY ILE SER          
SEQRES  10 A  349  LEU ILE LYS GLY VAL ASP GLU GLY PRO ASN GLY LEU LYS          
SEQRES  11 A  349  LEU ILE SER GLU VAL ILE GLY GLU ARG LEU GLY ILE PRO          
SEQRES  12 A  349  MET SER VAL LEU MET GLY ALA ASN ILE ALA SER GLU VAL          
SEQRES  13 A  349  ALA ASP GLU LYS PHE CYS GLU THR THR ILE GLY CYS LYS          
SEQRES  14 A  349  ASP PRO ALA GLN GLY GLN LEU LEU LYS GLU LEU MET GLN          
SEQRES  15 A  349  THR PRO ASN PHE ARG ILE THR VAL VAL GLN GLU VAL ASP          
SEQRES  16 A  349  THR VAL GLU ILE CYS GLY ALA LEU LYS ASN VAL VAL ALA          
SEQRES  17 A  349  VAL GLY ALA GLY PHE CYS ASP GLY LEU GLY PHE GLY ASP          
SEQRES  18 A  349  ASN THR LYS ALA ALA VAL ILE ARG LEU GLY LEU MET GLU          
SEQRES  19 A  349  MET ILE ALA PHE ALA LYS LEU PHE CYS SER GLY PRO VAL          
SEQRES  20 A  349  SER SER ALA THR PHE LEU GLU SER CYS GLY VAL ALA ASP          
SEQRES  21 A  349  LEU ILE THR THR CYS TYR GLY GLY ARG ASN ARG LYS VAL          
SEQRES  22 A  349  ALA GLU ALA PHE ALA ARG THR GLY LYS SER ILE GLU GLN          
SEQRES  23 A  349  LEU GLU LYS GLU LEU LEU ASN GLY GLN LYS LEU GLN GLY          
SEQRES  24 A  349  PRO GLU THR ALA ARG GLU LEU TYR SER ILE LEU GLN HIS          
SEQRES  25 A  349  LYS GLY LEU VAL ASP LYS PHE PRO LEU PHE MET ALA VAL          
SEQRES  26 A  349  TYR LYS VAL CYS TYR GLU GLY GLN PRO VAL GLY GLU PHE          
SEQRES  27 A  349  ILE HIS CYS LEU GLN ASN HIS PRO GLU HIS MET                  
SEQRES   1 B  349  MET ALA SER LYS LYS VAL CYS ILE VAL GLY SER GLY ASN          
SEQRES   2 B  349  TRP GLY SER ALA ILE ALA LYS ILE VAL GLY GLY ASN ALA          
SEQRES   3 B  349  ALA GLN LEU ALA GLN PHE ASP PRO ARG VAL THR MET TRP          
SEQRES   4 B  349  VAL PHE GLU GLU ASP ILE GLY GLY LYS LYS LEU THR GLU          
SEQRES   5 B  349  ILE ILE ASN THR GLN HIS GLU ASN VAL LYS TYR LEU PRO          
SEQRES   6 B  349  GLY HIS LYS LEU PRO PRO ASN VAL VAL ALA VAL PRO ASP          
SEQRES   7 B  349  VAL VAL GLN ALA ALA GLU ASP ALA ASP ILE LEU ILE PHE          
SEQRES   8 B  349  VAL VAL PRO HIS GLN PHE ILE GLY LYS ILE CYS ASP GLN          
SEQRES   9 B  349  LEU LYS GLY HIS LEU LYS ALA ASN ALA THR GLY ILE SER          
SEQRES  10 B  349  LEU ILE LYS GLY VAL ASP GLU GLY PRO ASN GLY LEU LYS          
SEQRES  11 B  349  LEU ILE SER GLU VAL ILE GLY GLU ARG LEU GLY ILE PRO          
SEQRES  12 B  349  MET SER VAL LEU MET GLY ALA ASN ILE ALA SER GLU VAL          
SEQRES  13 B  349  ALA ASP GLU LYS PHE CYS GLU THR THR ILE GLY CYS LYS          
SEQRES  14 B  349  ASP PRO ALA GLN GLY GLN LEU LEU LYS GLU LEU MET GLN          
SEQRES  15 B  349  THR PRO ASN PHE ARG ILE THR VAL VAL GLN GLU VAL ASP          
SEQRES  16 B  349  THR VAL GLU ILE CYS GLY ALA LEU LYS ASN VAL VAL ALA          
SEQRES  17 B  349  VAL GLY ALA GLY PHE CYS ASP GLY LEU GLY PHE GLY ASP          
SEQRES  18 B  349  ASN THR LYS ALA ALA VAL ILE ARG LEU GLY LEU MET GLU          
SEQRES  19 B  349  MET ILE ALA PHE ALA LYS LEU PHE CYS SER GLY PRO VAL          
SEQRES  20 B  349  SER SER ALA THR PHE LEU GLU SER CYS GLY VAL ALA ASP          
SEQRES  21 B  349  LEU ILE THR THR CYS TYR GLY GLY ARG ASN ARG LYS VAL          
SEQRES  22 B  349  ALA GLU ALA PHE ALA ARG THR GLY LYS SER ILE GLU GLN          
SEQRES  23 B  349  LEU GLU LYS GLU LEU LEU ASN GLY GLN LYS LEU GLN GLY          
SEQRES  24 B  349  PRO GLU THR ALA ARG GLU LEU TYR SER ILE LEU GLN HIS          
SEQRES  25 B  349  LYS GLY LEU VAL ASP LYS PHE PRO LEU PHE MET ALA VAL          
SEQRES  26 B  349  TYR LYS VAL CYS TYR GLU GLY GLN PRO VAL GLY GLU PHE          
SEQRES  27 B  349  ILE HIS CYS LEU GLN ASN HIS PRO GLU HIS MET                  
HET    PO4  A 401       5                                                       
HET    3SY  A 402      21                                                       
HET      K  A 403       1                                                       
HET      K  B 401       1                                                       
HETNAM     PO4 PHOSPHATE ION                                                    
HETNAM     3SY 2,2-BIS(HYDROXYMETHYL)PROPANE-1,3-DIOL                           
HETNAM       K POTASSIUM ION                                                    
FORMUL   3  PO4    O4 P 3-                                                      
FORMUL   4  3SY    C5 H12 O4                                                    
FORMUL   5    K    2(K 1+)                                                      
FORMUL   7  HOH   *366(H2 O)                                                    
HELIX    1 AA1 GLY A   12  LEU A   29  1                                  18    
HELIX    2 AA2 THR A   51  HIS A   58  1                                   8    
HELIX    3 AA3 ASP A   78  GLU A   84  1                                   7    
HELIX    4 AA4 PRO A   94  LYS A  106  1                                  13    
HELIX    5 AA5 LEU A  131  GLY A  141  1                                  11    
HELIX    6 AA6 ILE A  152  ASP A  158  1                                   7    
HELIX    7 AA7 ASP A  170  GLN A  182  1                                  13    
HELIX    8 AA8 GLU A  193  LEU A  217  1                                  25    
HELIX    9 AA9 GLY A  220  CYS A  243  1                                  24    
HELIX   10 AB1 SER A  248  GLU A  254  5                                   7    
HELIX   11 AB2 GLY A  257  GLY A  267  1                                  11    
HELIX   12 AB3 GLY A  268  GLY A  281  1                                  14    
HELIX   13 AB4 SER A  283  ASN A  293  1                                  11    
HELIX   14 AB5 LEU A  297  LYS A  313  1                                  17    
HELIX   15 AB6 LEU A  315  LYS A  318  5                                   4    
HELIX   16 AB7 PHE A  319  GLU A  331  1                                  13    
HELIX   17 AB8 PRO A  334  GLN A  343  5                                  10    
HELIX   18 AB9 HIS A  345  MET A  349  5                                   5    
HELIX   19 AC1 GLY B   12  LEU B   29  1                                  18    
HELIX   20 AC2 LEU B   50  HIS B   58  1                                   9    
HELIX   21 AC3 ASP B   78  GLU B   84  1                                   7    
HELIX   22 AC4 PRO B   94  LYS B  106  1                                  13    
HELIX   23 AC5 LEU B  131  GLY B  141  1                                  11    
HELIX   24 AC6 ILE B  152  ASP B  158  1                                   7    
HELIX   25 AC7 ASP B  170  GLN B  182  1                                  13    
HELIX   26 AC8 GLU B  193  LEU B  217  1                                  25    
HELIX   27 AC9 GLY B  220  CYS B  243  1                                  24    
HELIX   28 AD1 SER B  248  GLU B  254  5                                   7    
HELIX   29 AD2 GLY B  257  GLY B  267  1                                  11    
HELIX   30 AD3 GLY B  268  GLY B  281  1                                  14    
HELIX   31 AD4 SER B  283  ASN B  293  1                                  11    
HELIX   32 AD5 LEU B  297  GLY B  314  1                                  18    
HELIX   33 AD6 LEU B  315  LYS B  318  5                                   4    
HELIX   34 AD7 PHE B  319  GLU B  331  1                                  13    
HELIX   35 AD8 PRO B  334  PHE B  338  5                                   5    
HELIX   36 AD9 ILE B  339  GLN B  343  5                                   5    
HELIX   37 AE1 HIS B  345  MET B  349  5                                   5    
SHEET    1 AA1 8 VAL A  73  VAL A  76  0                                        
SHEET    2 AA1 8 PHE A  32  TRP A  39  1  N  MET A  38   O  VAL A  74           
SHEET    3 AA1 8 LYS A   4  VAL A   9  1  N  ILE A   8   O  THR A  37           
SHEET    4 AA1 8 ILE A  88  PHE A  91  1  O  ILE A  90   N  CYS A   7           
SHEET    5 AA1 8 THR A 114  SER A 117  1  O  ILE A 116   N  PHE A  91           
SHEET    6 AA1 8 MET A 144  MET A 148  1  O  SER A 145   N  SER A 117           
SHEET    7 AA1 8 CYS A 162  GLY A 167 -1  O  GLY A 167   N  VAL A 146           
SHEET    8 AA1 8 PHE A 186  VAL A 191  1  O  VAL A 191   N  ILE A 166           
SHEET    1 AA2 2 ASP A 123  GLY A 125  0                                        
SHEET    2 AA2 2 GLY A 128  LYS A 130 -1  O  LYS A 130   N  ASP A 123           
SHEET    1 AA3 8 VAL B  73  VAL B  76  0                                        
SHEET    2 AA3 8 VAL B  36  TRP B  39  1  N  VAL B  36   O  VAL B  74           
SHEET    3 AA3 8 VAL B   6  VAL B   9  1  N  ILE B   8   O  THR B  37           
SHEET    4 AA3 8 ILE B  88  PHE B  91  1  O  ILE B  90   N  VAL B   9           
SHEET    5 AA3 8 THR B 114  SER B 117  1  O  ILE B 116   N  PHE B  91           
SHEET    6 AA3 8 MET B 144  MET B 148  1  O  SER B 145   N  SER B 117           
SHEET    7 AA3 8 CYS B 162  GLY B 167 -1  O  THR B 165   N  MET B 148           
SHEET    8 AA3 8 PHE B 186  VAL B 191  1  O  VAL B 191   N  ILE B 166           
SHEET    1 AA4 2 ASP B  44  ILE B  45  0                                        
SHEET    2 AA4 2 LYS B  48  LYS B  49 -1  O  LYS B  48   N  ILE B  45           
LINK         O   ALA A  26                 K     K A 403     1555   1555  2.44  
LINK         O   ALA A  27                 K     K A 403     1555   1555  2.93  
LINK         O   LEU A  29                 K     K A 403     1555   1555  2.82  
LINK         O   PHE A  32                 K     K A 403     1555   1555  2.73  
LINK         O   ALA B  26                 K     K B 401     1555   1555  2.79  
LINK         O   ALA B  27                 K     K B 401     1555   1555  3.09  
LINK         O   LEU B  29                 K     K B 401     1555   1555  2.69  
LINK         O   PHE B  32                 K     K B 401     1555   1555  2.62  
LINK         K     K B 401                 O   HOH B 613     1555   1555  2.64  
LINK         K     K B 401                 O   HOH B 651     1555   1555  3.09  
LINK         K     K A 403                 O   HOH A 573     1555   1455  2.71  
LINK         K     K B 401                 O   HOH B 535     1555   1655  2.79  
SITE     1 AC1  4 LYS A 240  CYS A 243  GLY A 245  HOH A 543                    
SITE     1 AC2  7 LYS A 130  LEU A 131  GLU A 134  ASP A 195                    
SITE     2 AC2  7 PHE A 242  CYS A 243  SER A 244                               
SITE     1 AC3  6 ALA A  26  ALA A  27  LEU A  29  PHE A  32                    
SITE     2 AC3  6 PRO A  34  HOH A 573                                          
SITE     1 AC4  7 ALA B  26  ALA B  27  LEU B  29  PHE B  32                    
SITE     2 AC4  7 HOH B 535  HOH B 613  HOH B 651                               
CRYST1   63.370   76.160   64.390  90.00  96.03  90.00 P 1 21 1      4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.015780  0.000000  0.001667        0.00000                         
SCALE2      0.000000  0.013130  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.015617        0.00000