PDB Short entry for 6EEM HEADER LYASE 14-AUG-18 6EEM TITLE CRYSTAL STRUCTURE OF PAPAVER SOMNIFERUM TYROSINE DECARBOXYLASE IN TITLE 2 COMPLEX WITH L-TYROSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE/DOPA DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.1.28; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TYROSINE/DOPA DECARBOXYLASE; COMPND 8 CHAIN: B; COMPND 9 EC: 4.1.1.28; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAPAVER SOMNIFERUM; SOURCE 3 ORGANISM_COMMON: OPIUM POPPY; SOURCE 4 ORGANISM_TAXID: 3469; SOURCE 5 GENE: TYDC9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PAPAVER SOMNIFERUM; SOURCE 10 ORGANISM_COMMON: OPIUM POPPY; SOURCE 11 ORGANISM_TAXID: 3469; SOURCE 12 GENE: TYDC9; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AROMATIC AMINO ACID DECARBOXYLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.P.TORRENS-SPENCE,Y.CHIANG,T.SMITH,M.A.VICENT,Y.WANG,J.K.WENG REVDAT 7 15-NOV-23 6EEM 1 REMARK REVDAT 6 11-OCT-23 6EEM 1 JRNL REVDAT 5 03-JUN-20 6EEM 1 JRNL REVDAT 4 20-MAY-20 6EEM 1 JRNL REVDAT 3 01-JAN-20 6EEM 1 REMARK REVDAT 2 02-OCT-19 6EEM 1 JRNL REVDAT 1 19-SEP-18 6EEM 0 JRNL AUTH M.P.TORRENS-SPENCE,Y.C.CHIANG,T.SMITH,M.A.VICENT,Y.WANG, JRNL AUTH 2 J.K.WENG JRNL TITL STRUCTURAL BASIS FOR DIVERGENT AND CONVERGENT EVOLUTION OF JRNL TITL 2 CATALYTIC MACHINERIES IN PLANT AROMATIC AMINO ACID JRNL TITL 3 DECARBOXYLASE PROTEINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 10806 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32371491 JRNL DOI 10.1073/PNAS.1920097117 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.P.TORRENS-SPENCE,Y.-C.CHIANG,T.SMITH,M.A.VICENT,Y.WANG, REMARK 1 AUTH 2 J.K.WENG REMARK 1 TITL STRUCTURAL BASIS FOR INDEPENDENT ORIGINS OF NEW CATALYTIC REMARK 1 TITL 2 MACHINERIES IN PLANT AAAD PROTEINS REMARK 1 REF BIORXIV 2019 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/404970 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.326 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.015 REMARK 3 FREE R VALUE TEST SET COUNT : 1979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 77.0598 - 6.2894 1.00 2909 141 0.1774 0.1991 REMARK 3 2 6.2894 - 4.9924 1.00 2773 130 0.1700 0.2136 REMARK 3 3 4.9924 - 4.3614 1.00 2684 160 0.1331 0.1870 REMARK 3 4 4.3614 - 3.9626 1.00 2666 154 0.1444 0.1953 REMARK 3 5 3.9626 - 3.6786 1.00 2690 145 0.1549 0.1939 REMARK 3 6 3.6786 - 3.4617 1.00 2634 155 0.1666 0.2071 REMARK 3 7 3.4617 - 3.2884 1.00 2687 123 0.1893 0.2823 REMARK 3 8 3.2884 - 3.1452 1.00 2649 143 0.2190 0.2496 REMARK 3 9 3.1452 - 3.0241 1.00 2669 123 0.2381 0.2950 REMARK 3 10 3.0241 - 2.9198 1.00 2599 153 0.2323 0.2841 REMARK 3 11 2.9198 - 2.8285 1.00 2641 144 0.2332 0.3116 REMARK 3 12 2.8285 - 2.7476 1.00 2630 149 0.2439 0.2929 REMARK 3 13 2.7476 - 2.6753 1.00 2620 131 0.2716 0.3274 REMARK 3 14 2.6753 - 2.6100 1.00 2635 128 0.2946 0.3421 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.337 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.397 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7906 REMARK 3 ANGLE : 0.709 10740 REMARK 3 CHIRALITY : 0.047 1199 REMARK 3 PLANARITY : 0.004 1360 REMARK 3 DIHEDRAL : 17.513 2838 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EEM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236178. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39550 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.610 REMARK 200 RESOLUTION RANGE LOW (A) : 167.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1JS3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M AMMONIUM SULFATE 0.1 BIS TRIS PH REMARK 280 5.0 AND 1% W/V PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.49900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 61.38550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.38550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.74950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.38550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 61.38550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 125.24850 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.38550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.38550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.74950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 61.38550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.38550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 125.24850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.49900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -202.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 780 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 PRO A 5 REMARK 465 THR A 6 REMARK 465 ASN A 7 REMARK 465 ASN A 8 REMARK 465 LEU A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 ILE A 12 REMARK 465 SER A 13 REMARK 465 LEU A 14 REMARK 465 CYS A 15 REMARK 465 SER A 16 REMARK 465 SER A 158 REMARK 465 SER A 159 REMARK 465 LYS A 354 REMARK 465 ALA A 355 REMARK 465 THR A 356 REMARK 465 GLU A 357 REMARK 465 SER A 358 REMARK 465 LYS A 359 REMARK 465 ALA A 512 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 LEU B 4 REMARK 465 PRO B 5 REMARK 465 THR B 6 REMARK 465 ASN B 7 REMARK 465 ASN B 8 REMARK 465 LEU B 9 REMARK 465 GLU B 10 REMARK 465 SER B 11 REMARK 465 ILE B 12 REMARK 465 SER B 13 REMARK 465 LEU B 14 REMARK 465 CYS B 15 REMARK 465 SER B 16 REMARK 465 SER B 158 REMARK 465 SER B 159 REMARK 465 LYS B 354 REMARK 465 ALA B 355 REMARK 465 THR B 356 REMARK 465 GLU B 357 REMARK 465 SER B 358 REMARK 465 ALA B 512 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 98 -116.73 42.84 REMARK 500 SER A 127 86.20 169.67 REMARK 500 LEU A 255 -49.49 -132.29 REMARK 500 TRP A 322 32.55 -144.27 REMARK 500 PHE A 323 25.87 -144.88 REMARK 500 THR A 326 159.57 93.26 REMARK 500 LYS A 352 -39.88 -140.30 REMARK 500 PHE A 375 70.36 -65.78 REMARK 500 PHE A 424 -116.94 -131.91 REMARK 500 LYS A 440 72.48 -100.96 REMARK 500 LEU A 510 -80.59 -112.54 REMARK 500 TYR B 98 -116.86 40.76 REMARK 500 SER B 127 94.60 170.85 REMARK 500 LEU B 255 -49.90 -131.20 REMARK 500 TRP B 322 36.58 -152.26 REMARK 500 PHE B 323 29.29 -150.54 REMARK 500 THR B 326 160.63 87.97 REMARK 500 CYS B 329 81.35 -167.11 REMARK 500 PRO B 348 -162.70 -73.36 REMARK 500 PHE B 375 67.16 -68.42 REMARK 500 PHE B 424 -114.55 -135.06 REMARK 500 LYS B 440 32.28 -83.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 830 DISTANCE = 6.02 ANGSTROMS REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] REMARK 630 PYRIDIN-4-YL}METHYL)-L-TYROSINE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 0PR A 601 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PLP TYR REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 0PR A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TYR B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6EEI RELATED DB: PDB REMARK 900 PARALOG DBREF 6EEM A 1 512 UNP O82415 O82415_PAPSO 1 512 DBREF 6EEM B 1 512 UNP O82415 O82415_PAPSO 1 512 SEQADV 6EEM LYS A 45 UNP O82415 ASN 45 CONFLICT SEQADV 6EEM ASP A 202 UNP O82415 ASN 202 CONFLICT SEQADV 6EEM PRO A 348 UNP O82415 ALA 348 CONFLICT SEQADV 6EEM ILE A 410 UNP O82415 MET 410 CONFLICT SEQADV 6EEM THR A 434 UNP O82415 ALA 434 CONFLICT SEQADV 6EEM VAL A 456 UNP O82415 ALA 456 CONFLICT SEQADV 6EEM LYS B 45 UNP O82415 ASN 45 CONFLICT SEQADV 6EEM ASP B 202 UNP O82415 ASN 202 CONFLICT SEQADV 6EEM PRO B 348 UNP O82415 ALA 348 CONFLICT SEQADV 6EEM ILE B 410 UNP O82415 MET 410 CONFLICT SEQADV 6EEM THR B 434 UNP O82415 ALA 434 CONFLICT SEQADV 6EEM VAL B 456 UNP O82415 ALA 456 CONFLICT SEQRES 1 A 512 MET GLY SER LEU PRO THR ASN ASN LEU GLU SER ILE SER SEQRES 2 A 512 LEU CYS SER GLN ASN PRO LEU ASP PRO ASP GLU PHE ARG SEQRES 3 A 512 ARG GLN GLY HIS MET ILE ILE ASP PHE LEU ALA ASP TYR SEQRES 4 A 512 TYR LYS ASN VAL GLU LYS TYR PRO VAL ARG SER GLN VAL SEQRES 5 A 512 GLU PRO GLY TYR LEU LYS LYS ARG LEU PRO GLU SER ALA SEQRES 6 A 512 PRO TYR ASN PRO GLU SER ILE GLU THR ILE LEU GLU ASP SEQRES 7 A 512 VAL THR ASN ASP ILE ILE PRO GLY LEU THR HIS TRP GLN SEQRES 8 A 512 SER PRO ASN TYR PHE ALA TYR PHE PRO SER SER GLY SER SEQRES 9 A 512 ILE ALA GLY PHE LEU GLY GLU MET LEU SER THR GLY PHE SEQRES 10 A 512 ASN VAL VAL GLY PHE ASN TRP MET SER SER PRO ALA ALA SEQRES 11 A 512 THR GLU LEU GLU SER ILE VAL MET ASN TRP LEU GLY GLN SEQRES 12 A 512 MET LEU THR LEU PRO LYS SER PHE LEU PHE SER SER ASP SEQRES 13 A 512 GLY SER SER GLY GLY GLY GLY VAL LEU GLN GLY THR THR SEQRES 14 A 512 CYS GLU ALA ILE LEU CYS THR LEU THR ALA ALA ARG ASP SEQRES 15 A 512 LYS MET LEU ASN LYS ILE GLY ARG GLU ASN ILE ASN LYS SEQRES 16 A 512 LEU VAL VAL TYR ALA SER ASP GLN THR HIS CYS ALA LEU SEQRES 17 A 512 GLN LYS ALA ALA GLN ILE ALA GLY ILE ASN PRO LYS ASN SEQRES 18 A 512 VAL ARG ALA ILE LYS THR SER LYS ALA THR ASN PHE GLY SEQRES 19 A 512 LEU SER PRO ASN SER LEU GLN SER ALA ILE LEU ALA ASP SEQRES 20 A 512 ILE GLU SER GLY LEU VAL PRO LEU PHE LEU CYS ALA THR SEQRES 21 A 512 VAL GLY THR THR SER SER THR ALA VAL ASP PRO ILE GLY SEQRES 22 A 512 PRO LEU CYS ALA VAL ALA LYS LEU TYR GLY ILE TRP VAL SEQRES 23 A 512 HIS ILE ASP ALA ALA TYR ALA GLY SER ALA CYS ILE CYS SEQRES 24 A 512 PRO GLU PHE ARG HIS PHE ILE ASP GLY VAL GLU ASP ALA SEQRES 25 A 512 ASP SER PHE SER LEU ASN ALA HIS LYS TRP PHE PHE THR SEQRES 26 A 512 THR LEU ASP CYS CYS CYS LEU TRP VAL LYS ASP SER ASP SEQRES 27 A 512 SER LEU VAL LYS ALA LEU SER THR SER PRO GLU TYR LEU SEQRES 28 A 512 LYS ASN LYS ALA THR GLU SER LYS GLN VAL ILE ASP TYR SEQRES 29 A 512 LYS ASP TRP GLN ILE ALA LEU SER ARG ARG PHE ARG SER SEQRES 30 A 512 MET LYS LEU TRP LEU VAL LEU ARG SER TYR GLY VAL ALA SEQRES 31 A 512 ASN LEU ARG THR PHE LEU ARG SER HIS VAL LYS MET ALA SEQRES 32 A 512 LYS HIS PHE GLN GLY LEU ILE GLY MET ASP ASN ARG PHE SEQRES 33 A 512 GLU ILE VAL VAL PRO ARG THR PHE ALA MET VAL CYS PHE SEQRES 34 A 512 ARG LEU LYS PRO THR ALA ILE PHE LYS GLN LYS ILE VAL SEQRES 35 A 512 ASP ASN ASP TYR ILE GLU ASP GLN THR ASN GLU VAL ASN SEQRES 36 A 512 VAL LYS LEU LEU GLU SER VAL ASN ALA SER GLY LYS ILE SEQRES 37 A 512 TYR MET THR HIS ALA VAL VAL GLY GLY VAL TYR MET ILE SEQRES 38 A 512 ARG PHE ALA VAL GLY ALA THR LEU THR GLU GLU ARG HIS SEQRES 39 A 512 VAL THR GLY ALA TRP LYS VAL VAL GLN GLU HIS THR ASP SEQRES 40 A 512 ALA ILE LEU GLY ALA SEQRES 1 B 512 MET GLY SER LEU PRO THR ASN ASN LEU GLU SER ILE SER SEQRES 2 B 512 LEU CYS SER GLN ASN PRO LEU ASP PRO ASP GLU PHE ARG SEQRES 3 B 512 ARG GLN GLY HIS MET ILE ILE ASP PHE LEU ALA ASP TYR SEQRES 4 B 512 TYR LYS ASN VAL GLU LYS TYR PRO VAL ARG SER GLN VAL SEQRES 5 B 512 GLU PRO GLY TYR LEU LYS LYS ARG LEU PRO GLU SER ALA SEQRES 6 B 512 PRO TYR ASN PRO GLU SER ILE GLU THR ILE LEU GLU ASP SEQRES 7 B 512 VAL THR ASN ASP ILE ILE PRO GLY LEU THR HIS TRP GLN SEQRES 8 B 512 SER PRO ASN TYR PHE ALA TYR PHE PRO SER SER GLY SER SEQRES 9 B 512 ILE ALA GLY PHE LEU GLY GLU MET LEU SER THR GLY PHE SEQRES 10 B 512 ASN VAL VAL GLY PHE ASN TRP MET SER SER PRO ALA ALA SEQRES 11 B 512 THR GLU LEU GLU SER ILE VAL MET ASN TRP LEU GLY GLN SEQRES 12 B 512 MET LEU THR LEU PRO LYS SER PHE LEU PHE SER SER ASP SEQRES 13 B 512 GLY SER SER GLY GLY GLY GLY VAL LEU GLN GLY THR THR SEQRES 14 B 512 CYS GLU ALA ILE LEU CYS THR LEU THR ALA ALA ARG ASP SEQRES 15 B 512 LYS MET LEU ASN LYS ILE GLY ARG GLU ASN ILE ASN LYS SEQRES 16 B 512 LEU VAL VAL TYR ALA SER ASP GLN THR HIS CYS ALA LEU SEQRES 17 B 512 GLN LYS ALA ALA GLN ILE ALA GLY ILE ASN PRO LYS ASN SEQRES 18 B 512 VAL ARG ALA ILE LYS THR SER LYS ALA THR ASN PHE GLY SEQRES 19 B 512 LEU SER PRO ASN SER LEU GLN SER ALA ILE LEU ALA ASP SEQRES 20 B 512 ILE GLU SER GLY LEU VAL PRO LEU PHE LEU CYS ALA THR SEQRES 21 B 512 VAL GLY THR THR SER SER THR ALA VAL ASP PRO ILE GLY SEQRES 22 B 512 PRO LEU CYS ALA VAL ALA LYS LEU TYR GLY ILE TRP VAL SEQRES 23 B 512 HIS ILE ASP ALA ALA TYR ALA GLY SER ALA CYS ILE CYS SEQRES 24 B 512 PRO GLU PHE ARG HIS PHE ILE ASP GLY VAL GLU ASP ALA SEQRES 25 B 512 ASP SER PHE SER LEU ASN ALA HIS LLP TRP PHE PHE THR SEQRES 26 B 512 THR LEU ASP CYS CYS CYS LEU TRP VAL LYS ASP SER ASP SEQRES 27 B 512 SER LEU VAL LYS ALA LEU SER THR SER PRO GLU TYR LEU SEQRES 28 B 512 LYS ASN LYS ALA THR GLU SER LYS GLN VAL ILE ASP TYR SEQRES 29 B 512 LYS ASP TRP GLN ILE ALA LEU SER ARG ARG PHE ARG SER SEQRES 30 B 512 MET LYS LEU TRP LEU VAL LEU ARG SER TYR GLY VAL ALA SEQRES 31 B 512 ASN LEU ARG THR PHE LEU ARG SER HIS VAL LYS MET ALA SEQRES 32 B 512 LYS HIS PHE GLN GLY LEU ILE GLY MET ASP ASN ARG PHE SEQRES 33 B 512 GLU ILE VAL VAL PRO ARG THR PHE ALA MET VAL CYS PHE SEQRES 34 B 512 ARG LEU LYS PRO THR ALA ILE PHE LYS GLN LYS ILE VAL SEQRES 35 B 512 ASP ASN ASP TYR ILE GLU ASP GLN THR ASN GLU VAL ASN SEQRES 36 B 512 VAL LYS LEU LEU GLU SER VAL ASN ALA SER GLY LYS ILE SEQRES 37 B 512 TYR MET THR HIS ALA VAL VAL GLY GLY VAL TYR MET ILE SEQRES 38 B 512 ARG PHE ALA VAL GLY ALA THR LEU THR GLU GLU ARG HIS SEQRES 39 B 512 VAL THR GLY ALA TRP LYS VAL VAL GLN GLU HIS THR ASP SEQRES 40 B 512 ALA ILE LEU GLY ALA MODRES 6EEM LLP B 321 LYS MODIFIED RESIDUE HET LLP B 321 24 HET 0PR A 601 44 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET TYR B 601 24 HET SO4 B 602 5 HET SO4 B 603 5 HET SO4 B 604 5 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM 0PR N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN- HETNAM 2 0PR 4-YL}METHYL)-L-TYROSINE HETNAM SO4 SULFATE ION HETNAM TYR TYROSINE HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN 0PR PHOSPHO-5'-PYRIDOXYL TYROSINE FORMUL 2 LLP C14 H22 N3 O7 P FORMUL 3 0PR C17 H21 N2 O8 P FORMUL 4 SO4 7(O4 S 2-) FORMUL 8 TYR C9 H11 N O3 FORMUL 12 HOH *252(H2 O) HELIX 1 AA1 ASP A 21 VAL A 43 1 23 HELIX 2 AA2 GLU A 44 TYR A 46 5 3 HELIX 3 AA3 GLY A 55 LEU A 61 1 7 HELIX 4 AA4 SER A 71 ILE A 83 1 13 HELIX 5 AA5 ILE A 84 LEU A 87 5 4 HELIX 6 AA6 SER A 104 ASN A 118 1 15 HELIX 7 AA7 SER A 127 THR A 146 1 20 HELIX 8 AA8 PRO A 148 LEU A 152 5 5 HELIX 9 AA9 THR A 168 GLY A 189 1 22 HELIX 10 AB1 ARG A 190 ASN A 194 5 5 HELIX 11 AB2 HIS A 205 ALA A 215 1 11 HELIX 12 AB3 ASN A 218 LYS A 220 5 3 HELIX 13 AB4 SER A 228 ASN A 232 5 5 HELIX 14 AB5 SER A 236 SER A 250 1 15 HELIX 15 AB6 PRO A 271 LEU A 281 1 11 HELIX 16 AB7 TYR A 292 ILE A 298 5 7 HELIX 17 AB8 CYS A 299 HIS A 304 1 6 HELIX 18 AB9 PHE A 305 ASP A 307 5 3 HELIX 19 AC1 GLY A 308 ALA A 312 5 5 HELIX 20 AC2 ALA A 319 PHE A 323 1 5 HELIX 21 AC3 ASP A 336 SER A 345 1 10 HELIX 22 AC4 ASP A 363 GLN A 368 5 6 HELIX 23 AC5 ARG A 376 GLY A 388 1 13 HELIX 24 AC6 GLY A 388 MET A 412 1 25 HELIX 25 AC7 PRO A 433 ILE A 436 5 4 HELIX 26 AC8 ASN A 444 GLY A 466 1 23 HELIX 27 AC9 GLU A 491 LEU A 510 1 20 HELIX 28 AD1 ASP B 21 VAL B 43 1 23 HELIX 29 AD2 GLU B 44 TYR B 46 5 3 HELIX 30 AD3 GLY B 55 LEU B 61 1 7 HELIX 31 AD4 SER B 71 ASP B 82 1 12 HELIX 32 AD5 ILE B 83 LEU B 87 5 5 HELIX 33 AD6 SER B 104 ASN B 118 1 15 HELIX 34 AD7 SER B 127 LEU B 145 1 19 HELIX 35 AD8 PRO B 148 LEU B 152 5 5 HELIX 36 AD9 THR B 168 GLY B 189 1 22 HELIX 37 AE1 ARG B 190 ASN B 194 5 5 HELIX 38 AE2 CYS B 206 ALA B 215 1 10 HELIX 39 AE3 ASN B 218 LYS B 220 5 3 HELIX 40 AE4 SER B 228 ASN B 232 5 5 HELIX 41 AE5 SER B 236 SER B 250 1 15 HELIX 42 AE6 PRO B 271 LEU B 281 1 11 HELIX 43 AE7 TYR B 292 ILE B 298 5 7 HELIX 44 AE8 CYS B 299 HIS B 304 1 6 HELIX 45 AE9 PHE B 305 ASP B 307 5 3 HELIX 46 AF1 GLY B 308 ALA B 312 5 5 HELIX 47 AF2 ALA B 319 PHE B 323 1 5 HELIX 48 AF3 ASP B 336 SER B 345 1 10 HELIX 49 AF4 ASP B 363 GLN B 368 5 6 HELIX 50 AF5 ARG B 376 MET B 412 1 37 HELIX 51 AF6 PRO B 433 ILE B 436 5 4 HELIX 52 AF7 ASN B 444 GLY B 466 1 23 HELIX 53 AF8 GLU B 491 GLY B 511 1 21 SHEET 1 AA1 7 GLY A 162 GLN A 166 0 SHEET 2 AA1 7 CYS A 330 VAL A 334 -1 O CYS A 330 N GLN A 166 SHEET 3 AA1 7 SER A 314 ASN A 318 -1 N PHE A 315 O TRP A 333 SHEET 4 AA1 7 TRP A 285 ASP A 289 1 N ILE A 288 O SER A 316 SHEET 5 AA1 7 VAL A 253 THR A 260 1 N LEU A 257 O TRP A 285 SHEET 6 AA1 7 LEU A 196 SER A 201 1 N TYR A 199 O PHE A 256 SHEET 7 AA1 7 VAL A 222 ILE A 225 1 O ILE A 225 N ALA A 200 SHEET 1 AA2 4 PHE A 416 ILE A 418 0 SHEET 2 AA2 4 MET A 426 LEU A 431 -1 O ARG A 430 N GLU A 417 SHEET 3 AA2 4 VAL A 478 ALA A 484 -1 O ILE A 481 N PHE A 429 SHEET 4 AA2 4 HIS A 472 VAL A 475 -1 N ALA A 473 O MET A 480 SHEET 1 AA3 7 GLY B 162 GLN B 166 0 SHEET 2 AA3 7 CYS B 330 VAL B 334 -1 O VAL B 334 N GLY B 162 SHEET 3 AA3 7 SER B 314 ASN B 318 -1 N PHE B 315 O TRP B 333 SHEET 4 AA3 7 TRP B 285 ASP B 289 1 N ILE B 288 O SER B 316 SHEET 5 AA3 7 VAL B 253 THR B 260 1 N LEU B 257 O TRP B 285 SHEET 6 AA3 7 LEU B 196 SER B 201 1 N TYR B 199 O PHE B 256 SHEET 7 AA3 7 VAL B 222 ILE B 225 1 O ARG B 223 N VAL B 198 SHEET 1 AA4 4 PHE B 416 VAL B 420 0 SHEET 2 AA4 4 MET B 426 LEU B 431 -1 O CYS B 428 N VAL B 419 SHEET 3 AA4 4 VAL B 478 ALA B 484 -1 O ILE B 481 N PHE B 429 SHEET 4 AA4 4 THR B 471 VAL B 475 -1 N THR B 471 O ARG B 482 LINK C HIS B 320 N LLP B 321 1555 1555 1.33 LINK C LLP B 321 N TRP B 322 1555 1555 1.33 CISPEP 1 LEU A 327 ASP A 328 0 -2.88 CISPEP 2 LEU B 327 ASP B 328 0 -3.84 SITE 1 AC1 21 TRP A 90 PHE A 99 PRO A 100 THR A 168 SITE 2 AC1 21 THR A 169 CYS A 170 HIS A 205 THR A 260 SITE 3 AC1 21 THR A 264 ASP A 289 ALA A 291 ASN A 318 SITE 4 AC1 21 HIS A 320 LYS A 321 LEU A 327 HOH A 717 SITE 5 AC1 21 VAL B 120 PHE B 122 TYR B 350 LEU B 371 SITE 6 AC1 21 SER B 372 SITE 1 AC2 4 GLY A 189 ARG A 190 HOH A 764 ASN B 218 SITE 1 AC3 3 ARG A 393 HOH A 773 LYS B 149 SITE 1 AC4 3 PHE A 395 HIS A 399 THR A 488 SITE 1 AC5 5 LYS A 183 GLY A 283 ILE A 284 ASP A 313 SITE 2 AC5 5 HOH A 787 SITE 1 AC6 12 TYR A 350 LEU A 371 SER A 372 TRP B 90 SITE 2 AC6 12 TYR B 98 PHE B 99 PRO B 100 SER B 101 SITE 3 AC6 12 HIS B 205 THR B 264 HIS B 320 LLP B 321 SITE 1 AC7 4 ASN A 218 LYS A 220 GLY B 189 ARG B 190 SITE 1 AC8 6 HIS A 304 PRO B 300 ARG B 393 ARG B 397 SITE 2 AC8 6 HOH B 708 HOH B 778 SITE 1 AC9 5 PRO A 19 PHE B 395 HIS B 399 ALA B 487 SITE 2 AC9 5 THR B 488 CRYST1 122.771 122.771 166.998 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008145 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005988 0.00000