PDB Short entry for 6EJ3 HEADER PEPTIDE BINDING PROTEIN 20-SEP-17 6EJ3 TITLE BACE1 COMPOUND 23 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-SECRETASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTYL PROTEASE 2,ASP 2,BETA-SITE AMYLOID PRECURSOR COMPND 5 PROTEIN CLEAVING ENZYME 1,BETA-SITE APP CLEAVING ENZYME 1,MEMAPSIN-2, COMPND 6 MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 2; COMPND 7 EC: 3.4.23.46; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BACE1, BACE, KIAA1149; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACE1, PROTEASE, ALZHEIMER, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.JOHANSSON REVDAT 2 09-MAY-18 6EJ3 1 JRNL REVDAT 1 18-APR-18 6EJ3 0 JRNL AUTH P.JOHANSSON,K.KASPERSSON,I.K.GURRELL,E.BACK,S.EKETJALL, JRNL AUTH 2 C.W.SCOTT,G.CEBERS,P.THORNE,M.J.MCKENZIE,H.BEATON,P.DAVEY, JRNL AUTH 3 K.KOLMODIN,J.HOLENZ,M.E.DUGGAN,S.BUDD HAEBERLEIN,R.W.BURLI JRNL TITL TOWARD BETA-SECRETASE-1 INHIBITORS WITH IMPROVED ISOFORM JRNL TITL 2 SELECTIVITY. JRNL REF J. MED. CHEM. V. 61 3491 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29617572 JRNL DOI 10.1021/ACS.JMEDCHEM.7B01716 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.12 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2781 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2285 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2654 REMARK 3 BIN R VALUE (WORKING SET) : 0.2284 REMARK 3 BIN FREE R VALUE : 0.2311 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.57 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 127 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2901 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : 0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.131 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.120 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.127 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.117 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3014 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4104 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 999 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 68 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 444 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3014 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 384 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3409 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.19 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.17 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.78 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -14.4979 -42.0101 0.5109 REMARK 3 T TENSOR REMARK 3 T11: -0.2597 T22: -0.2491 REMARK 3 T33: -0.2425 T12: -0.0084 REMARK 3 T13: -0.0331 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 2.5247 L22: 0.8844 REMARK 3 L33: 1.2180 L12: -1.3631 REMARK 3 L13: 1.1183 L23: -0.5748 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: 0.0480 S13: -0.2780 REMARK 3 S21: -0.0010 S22: 0.0429 S23: 0.1655 REMARK 3 S31: -0.0609 S32: 0.0629 S33: -0.0315 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EJ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40169 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 47.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.10 REMARK 200 R MERGE (I) : 0.20900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 4.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: IN HOUSE STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% PEG 6K, 100MM NAOAC PH 5.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.70333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.40667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.05500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 141.75833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.35167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.70333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 113.40667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 141.75833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 85.05500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.35167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 783 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -60 REMARK 465 ALA A -59 REMARK 465 GLN A -58 REMARK 465 ALA A -57 REMARK 465 LEU A -56 REMARK 465 PRO A -55 REMARK 465 TRP A -54 REMARK 465 LEU A -53 REMARK 465 LEU A -52 REMARK 465 LEU A -51 REMARK 465 TRP A -50 REMARK 465 MET A -49 REMARK 465 GLY A -48 REMARK 465 ALA A -47 REMARK 465 GLY A -46 REMARK 465 VAL A -45 REMARK 465 LEU A -44 REMARK 465 PRO A -43 REMARK 465 ALA A -42 REMARK 465 HIS A -41 REMARK 465 GLY A -40 REMARK 465 THR A -39 REMARK 465 GLN A -38 REMARK 465 HIS A -37 REMARK 465 GLY A -36 REMARK 465 ILE A -35 REMARK 465 ARG A -34 REMARK 465 LEU A -33 REMARK 465 PRO A -32 REMARK 465 LEU A -31 REMARK 465 ARG A -30 REMARK 465 SER A -29 REMARK 465 GLY A -28 REMARK 465 LEU A -27 REMARK 465 GLY A -26 REMARK 465 GLY A -25 REMARK 465 ALA A -24 REMARK 465 PRO A -23 REMARK 465 LEU A -22 REMARK 465 GLY A -21 REMARK 465 LEU A -20 REMARK 465 ARG A -19 REMARK 465 LEU A -18 REMARK 465 PRO A -17 REMARK 465 ARG A -16 REMARK 465 GLU A -15 REMARK 465 THR A -14 REMARK 465 ASP A -13 REMARK 465 GLU A -12 REMARK 465 GLU A -11 REMARK 465 PRO A -10 REMARK 465 GLU A -9 REMARK 465 GLU A -8 REMARK 465 PRO A -7 REMARK 465 GLY A -6 REMARK 465 ARG A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 PHE A -1 REMARK 465 VAL A 0 REMARK 465 GLY A 158 REMARK 465 PHE A 159 REMARK 465 PRO A 160 REMARK 465 LEU A 161 REMARK 465 ASN A 162 REMARK 465 GLN A 163 REMARK 465 SER A 164 REMARK 465 GLU A 165 REMARK 465 VAL A 166 REMARK 465 LEU A 167 REMARK 465 ALA A 168 REMARK 465 SER A 169 REMARK 465 ASP A 311 REMARK 465 VAL A 312 REMARK 465 ALA A 313 REMARK 465 THR A 314 REMARK 465 SER A 315 REMARK 465 GLN A 316 REMARK 465 ASP A 317 REMARK 465 GLN A 388 REMARK 465 THR A 389 REMARK 465 ASP A 390 REMARK 465 GLU A 391 REMARK 465 SER A 392 REMARK 465 THR A 393 REMARK 465 LEU A 394 REMARK 465 MET A 395 REMARK 465 THR A 396 REMARK 465 ILE A 397 REMARK 465 ALA A 398 REMARK 465 TYR A 399 REMARK 465 VAL A 400 REMARK 465 MET A 401 REMARK 465 ALA A 402 REMARK 465 ALA A 403 REMARK 465 ILE A 404 REMARK 465 CYS A 405 REMARK 465 ALA A 406 REMARK 465 LEU A 407 REMARK 465 PHE A 408 REMARK 465 MET A 409 REMARK 465 LEU A 410 REMARK 465 PRO A 411 REMARK 465 LEU A 412 REMARK 465 CYS A 413 REMARK 465 LEU A 414 REMARK 465 MET A 415 REMARK 465 VAL A 416 REMARK 465 CYS A 417 REMARK 465 GLN A 418 REMARK 465 TRP A 419 REMARK 465 ARG A 420 REMARK 465 CYS A 421 REMARK 465 LEU A 422 REMARK 465 ARG A 423 REMARK 465 CYS A 424 REMARK 465 LEU A 425 REMARK 465 ARG A 426 REMARK 465 GLN A 427 REMARK 465 GLN A 428 REMARK 465 HIS A 429 REMARK 465 ASP A 430 REMARK 465 ASP A 431 REMARK 465 PHE A 432 REMARK 465 ALA A 433 REMARK 465 ASP A 434 REMARK 465 ASP A 435 REMARK 465 ILE A 436 REMARK 465 SER A 437 REMARK 465 LEU A 438 REMARK 465 LEU A 439 REMARK 465 LYS A 440 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 73 NE2 GLN A 73 10444 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 129 C - N - CD ANGL. DEV. = 14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 89 40.70 -99.29 REMARK 500 TRP A 197 -78.50 -148.06 REMARK 500 ASP A 363 -169.47 -122.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B7T A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6EJ2 RELATED DB: PDB DBREF 6EJ3 A -60 440 UNP P56817 BACE1_HUMAN 1 501 SEQRES 1 A 501 MET ALA GLN ALA LEU PRO TRP LEU LEU LEU TRP MET GLY SEQRES 2 A 501 ALA GLY VAL LEU PRO ALA HIS GLY THR GLN HIS GLY ILE SEQRES 3 A 501 ARG LEU PRO LEU ARG SER GLY LEU GLY GLY ALA PRO LEU SEQRES 4 A 501 GLY LEU ARG LEU PRO ARG GLU THR ASP GLU GLU PRO GLU SEQRES 5 A 501 GLU PRO GLY ARG ARG GLY SER PHE VAL GLU MET VAL ASP SEQRES 6 A 501 ASN LEU ARG GLY LYS SER GLY GLN GLY TYR TYR VAL GLU SEQRES 7 A 501 MET THR VAL GLY SER PRO PRO GLN THR LEU ASN ILE LEU SEQRES 8 A 501 VAL ASP THR GLY SER SER ASN PHE ALA VAL GLY ALA ALA SEQRES 9 A 501 PRO HIS PRO PHE LEU HIS ARG TYR TYR GLN ARG GLN LEU SEQRES 10 A 501 SER SER THR TYR ARG ASP LEU ARG LYS GLY VAL TYR VAL SEQRES 11 A 501 PRO TYR THR GLN GLY LYS TRP GLU GLY GLU LEU GLY THR SEQRES 12 A 501 ASP LEU VAL SER ILE PRO HIS GLY PRO ASN VAL THR VAL SEQRES 13 A 501 ARG ALA ASN ILE ALA ALA ILE THR GLU SER ASP LYS PHE SEQRES 14 A 501 PHE ILE ASN GLY SER ASN TRP GLU GLY ILE LEU GLY LEU SEQRES 15 A 501 ALA TYR ALA GLU ILE ALA ARG PRO ASP ASP SER LEU GLU SEQRES 16 A 501 PRO PHE PHE ASP SER LEU VAL LYS GLN THR HIS VAL PRO SEQRES 17 A 501 ASN LEU PHE SER LEU GLN LEU CYS GLY ALA GLY PHE PRO SEQRES 18 A 501 LEU ASN GLN SER GLU VAL LEU ALA SER VAL GLY GLY SER SEQRES 19 A 501 MET ILE ILE GLY GLY ILE ASP HIS SER LEU TYR THR GLY SEQRES 20 A 501 SER LEU TRP TYR THR PRO ILE ARG ARG GLU TRP TYR TYR SEQRES 21 A 501 GLU VAL ILE ILE VAL ARG VAL GLU ILE ASN GLY GLN ASP SEQRES 22 A 501 LEU LYS MET ASP CYS LYS GLU TYR ASN TYR ASP LYS SER SEQRES 23 A 501 ILE VAL ASP SER GLY THR THR ASN LEU ARG LEU PRO LYS SEQRES 24 A 501 LYS VAL PHE GLU ALA ALA VAL LYS SER ILE LYS ALA ALA SEQRES 25 A 501 SER SER THR GLU LYS PHE PRO ASP GLY PHE TRP LEU GLY SEQRES 26 A 501 GLU GLN LEU VAL CYS TRP GLN ALA GLY THR THR PRO TRP SEQRES 27 A 501 ASN ILE PHE PRO VAL ILE SER LEU TYR LEU MET GLY GLU SEQRES 28 A 501 VAL THR ASN GLN SER PHE ARG ILE THR ILE LEU PRO GLN SEQRES 29 A 501 GLN TYR LEU ARG PRO VAL GLU ASP VAL ALA THR SER GLN SEQRES 30 A 501 ASP ASP CYS TYR LYS PHE ALA ILE SER GLN SER SER THR SEQRES 31 A 501 GLY THR VAL MET GLY ALA VAL ILE MET GLU GLY PHE TYR SEQRES 32 A 501 VAL VAL PHE ASP ARG ALA ARG LYS ARG ILE GLY PHE ALA SEQRES 33 A 501 VAL SER ALA CYS HIS VAL HIS ASP GLU PHE ARG THR ALA SEQRES 34 A 501 ALA VAL GLU GLY PRO PHE VAL THR LEU ASP MET GLU ASP SEQRES 35 A 501 CYS GLY TYR ASN ILE PRO GLN THR ASP GLU SER THR LEU SEQRES 36 A 501 MET THR ILE ALA TYR VAL MET ALA ALA ILE CYS ALA LEU SEQRES 37 A 501 PHE MET LEU PRO LEU CYS LEU MET VAL CYS GLN TRP ARG SEQRES 38 A 501 CYS LEU ARG CYS LEU ARG GLN GLN HIS ASP ASP PHE ALA SEQRES 39 A 501 ASP ASP ILE SER LEU LEU LYS HET B7T A 501 28 HETNAM B7T (1R,4R)-4-METHOXY-6'-(5-METHYL-3-PYRIDINYL)-3'H- HETNAM 2 B7T DISPIRO[CYCLOHEXANE-1,2'-INDENE-1',4''-[1,3]OXAZOL]- HETNAM 3 B7T 2''-AMINE FORMUL 2 B7T C23 H27 N3 O2 FORMUL 3 HOH *185(H2 O) HELIX 1 AA1 GLN A 53 SER A 57 5 5 HELIX 2 AA2 TYR A 123 ALA A 127 5 5 HELIX 3 AA3 PRO A 135 THR A 144 1 10 HELIX 4 AA4 ASP A 180 SER A 182 5 3 HELIX 5 AA5 ASP A 216 TYR A 222 5 7 HELIX 6 AA6 LYS A 238 SER A 252 1 15 HELIX 7 AA7 PRO A 258 LEU A 263 1 6 HELIX 8 AA8 PRO A 276 PHE A 280 5 5 HELIX 9 AA9 LEU A 301 TYR A 305 1 5 HELIX 10 AB1 GLY A 334 GLU A 339 1 6 HELIX 11 AB2 ASP A 378 GLY A 383 5 6 SHEET 1 AA1 9 ARG A 61 TYR A 71 0 SHEET 2 AA1 9 GLY A 74 SER A 86 -1 O LEU A 80 N LYS A 65 SHEET 3 AA1 9 TYR A 14 VAL A 20 -1 N THR A 19 O SER A 86 SHEET 4 AA1 9 LEU A 6 GLY A 8 -1 N ARG A 7 O TYR A 15 SHEET 5 AA1 9 GLY A 171 ILE A 176 -1 O GLY A 172 N LEU A 6 SHEET 6 AA1 9 PHE A 150 CYS A 155 -1 N GLN A 153 O SER A 173 SHEET 7 AA1 9 PHE A 341 ASP A 346 -1 O PHE A 345 N PHE A 150 SHEET 8 AA1 9 ARG A 351 SER A 357 -1 O ALA A 355 N TYR A 342 SHEET 9 AA1 9 TYR A 184 PRO A 192 -1 N THR A 191 O ILE A 352 SHEET 1 AA213 ARG A 61 TYR A 71 0 SHEET 2 AA213 GLY A 74 SER A 86 -1 O LEU A 80 N LYS A 65 SHEET 3 AA213 VAL A 95 ASP A 106 -1 O ILE A 99 N GLY A 81 SHEET 4 AA213 PHE A 38 GLY A 41 1 N VAL A 40 O ILE A 102 SHEET 5 AA213 GLY A 117 GLY A 120 -1 O ILE A 118 N ALA A 39 SHEET 6 AA213 GLN A 25 ASP A 32 1 N LEU A 30 O LEU A 119 SHEET 7 AA213 TYR A 14 VAL A 20 -1 N VAL A 16 O ILE A 29 SHEET 8 AA213 LEU A 6 GLY A 8 -1 N ARG A 7 O TYR A 15 SHEET 9 AA213 GLY A 171 ILE A 176 -1 O GLY A 172 N LEU A 6 SHEET 10 AA213 PHE A 150 CYS A 155 -1 N GLN A 153 O SER A 173 SHEET 11 AA213 PHE A 341 ASP A 346 -1 O PHE A 345 N PHE A 150 SHEET 12 AA213 ARG A 351 SER A 357 -1 O ALA A 355 N TYR A 342 SHEET 13 AA213 TYR A 184 PRO A 192 -1 N THR A 191 O ILE A 352 SHEET 1 AA3 5 GLN A 211 ASP A 212 0 SHEET 2 AA3 5 ILE A 203 ILE A 208 -1 N ILE A 208 O GLN A 211 SHEET 3 AA3 5 ILE A 283 MET A 288 -1 O TYR A 286 N ARG A 205 SHEET 4 AA3 5 GLN A 294 ILE A 300 -1 O ILE A 300 N ILE A 283 SHEET 5 AA3 5 ALA A 369 VAL A 375 -1 O GLU A 371 N ARG A 297 SHEET 1 AA4 4 SER A 225 VAL A 227 0 SHEET 2 AA4 4 THR A 331 MET A 333 1 O MET A 333 N ILE A 226 SHEET 3 AA4 4 LEU A 234 PRO A 237 -1 N ARG A 235 O VAL A 332 SHEET 4 AA4 4 ILE A 324 SER A 327 1 O SER A 325 N LEU A 236 SHEET 1 AA5 3 VAL A 268 CYS A 269 0 SHEET 2 AA5 3 CYS A 319 PHE A 322 -1 O TYR A 320 N VAL A 268 SHEET 3 AA5 3 LEU A 306 PRO A 308 -1 N ARG A 307 O LYS A 321 SSBOND 1 CYS A 155 CYS A 359 1555 1555 2.04 SSBOND 2 CYS A 217 CYS A 382 1555 1555 1.88 SSBOND 3 CYS A 269 CYS A 319 1555 1555 1.98 CISPEP 1 SER A 22 PRO A 23 0 -0.98 CISPEP 2 ARG A 128 PRO A 129 0 3.14 CISPEP 3 TYR A 222 ASP A 223 0 5.68 CISPEP 4 GLY A 372 PRO A 373 0 -6.46 SITE 1 AC1 10 GLY A 11 GLY A 13 ASP A 32 ASN A 37 SITE 2 AC1 10 VAL A 69 TRP A 76 ILE A 110 ILE A 118 SITE 3 AC1 10 ASP A 228 GLY A 230 CRYST1 102.889 102.889 170.110 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009719 0.005611 0.000000 0.00000 SCALE2 0.000000 0.011223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005879 0.00000