PDB Short entry for 6F2K HEADER HYDROLASE 24-NOV-17 6F2K TITLE CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME CO-CRYSTALLIZED IN TITLE 2 PRESENCE OF 100 MM TB-XO4 AND 100 MM POTASSIUM PHOSPHATE MONOBASIC. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS TB-XO4, CRYSTALLOPHORE, NUCLEATION, PHASING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ENGILBERGE,F.RIOBE,S.DI PIETRO,E.GIRARD,E.DUMONT,O.MAURY REVDAT 3 17-JAN-24 6F2K 1 REMARK REVDAT 2 17-APR-19 6F2K 1 JRNL REVDAT 1 03-OCT-18 6F2K 0 JRNL AUTH S.ENGILBERGE,F.RIOBE,T.WAGNER,S.DI PIETRO,C.BREYTON, JRNL AUTH 2 B.FRANZETTI,S.SHIMA,E.GIRARD,E.DUMONT,O.MAURY JRNL TITL UNVEILING THE BINDING MODES OF THE CRYSTALLOPHORE, A JRNL TITL 2 TERBIUM-BASED NUCLEATING AND PHASING MOLECULAR AGENT FOR JRNL TITL 3 PROTEIN CRYSTALLOGRAPHY. JRNL REF CHEMISTRY V. 24 9739 2018 JRNL REFN ISSN 0947-6539 JRNL PMID 29806881 JRNL DOI 10.1002/CHEM.201802172 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 18864 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 944 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.57 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3006 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1959 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2855 REMARK 3 BIN R VALUE (WORKING SET) : 0.1944 REMARK 3 BIN FREE R VALUE : 0.2240 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.02 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 151 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.77750 REMARK 3 B22 (A**2) : -0.77750 REMARK 3 B33 (A**2) : 1.55500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.220 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.101 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.101 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.104 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.092 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2032 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3642 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 437 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 28 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 313 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2032 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 7 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 135 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2453 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.23 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.92 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|14 } REMARK 3 ORIGIN FOR THE GROUP (A): -6.6279 16.0450 9.4283 REMARK 3 T TENSOR REMARK 3 T11: 0.1087 T22: 0.2042 REMARK 3 T33: 0.1159 T12: 0.0423 REMARK 3 T13: -0.0930 T23: -0.0983 REMARK 3 L TENSOR REMARK 3 L11: 0.9834 L22: 0.7502 REMARK 3 L33: 1.5590 L12: 1.3065 REMARK 3 L13: 0.1417 L23: -0.9402 REMARK 3 S TENSOR REMARK 3 S11: 0.0959 S12: 0.2845 S13: -0.0192 REMARK 3 S21: -0.1786 S22: -0.1449 S23: 0.2537 REMARK 3 S31: 0.1445 S32: -0.0575 S33: 0.0490 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|15 - A|24 } REMARK 3 ORIGIN FOR THE GROUP (A): -11.6182 23.3878 20.5813 REMARK 3 T TENSOR REMARK 3 T11: 0.0703 T22: 0.1876 REMARK 3 T33: 0.1243 T12: 0.0122 REMARK 3 T13: 0.0214 T23: -0.0495 REMARK 3 L TENSOR REMARK 3 L11: 1.0321 L22: 0.8029 REMARK 3 L33: 1.2045 L12: 0.2571 REMARK 3 L13: 0.7380 L23: 0.1920 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: 0.0986 S13: -0.0620 REMARK 3 S21: 0.2094 S22: 0.0373 S23: 0.3113 REMARK 3 S31: 0.1494 S32: -0.0747 S33: -0.0104 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|25 - A|42 } REMARK 3 ORIGIN FOR THE GROUP (A): 0.2173 21.6991 12.7985 REMARK 3 T TENSOR REMARK 3 T11: 0.0813 T22: 0.1260 REMARK 3 T33: 0.0442 T12: 0.0349 REMARK 3 T13: -0.0340 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.0671 L22: 1.4873 REMARK 3 L33: 1.0780 L12: -0.3527 REMARK 3 L13: -0.3296 L23: -0.1329 REMARK 3 S TENSOR REMARK 3 S11: 0.1009 S12: 0.1488 S13: -0.0262 REMARK 3 S21: -0.0794 S22: -0.0921 S23: 0.0159 REMARK 3 S31: -0.0506 S32: -0.0132 S33: -0.0088 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|43 - A|50 } REMARK 3 ORIGIN FOR THE GROUP (A): 14.2401 19.5797 23.0608 REMARK 3 T TENSOR REMARK 3 T11: 0.1130 T22: 0.1171 REMARK 3 T33: 0.0793 T12: -0.0012 REMARK 3 T13: -0.0421 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.9556 L22: 0.0883 REMARK 3 L33: 0.2180 L12: 0.1617 REMARK 3 L13: -0.9121 L23: 0.4920 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: 0.0608 S13: -0.0252 REMARK 3 S21: -0.0254 S22: -0.0425 S23: -0.1563 REMARK 3 S31: -0.3936 S32: -0.2419 S33: 0.0480 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|51 - A|58 } REMARK 3 ORIGIN FOR THE GROUP (A): 5.5467 17.5593 20.3494 REMARK 3 T TENSOR REMARK 3 T11: 0.0816 T22: 0.1214 REMARK 3 T33: 0.0499 T12: 0.0273 REMARK 3 T13: -0.0202 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 1.4662 L12: -0.5886 REMARK 3 L13: -0.8661 L23: -0.6391 REMARK 3 S TENSOR REMARK 3 S11: -0.1409 S12: 0.0763 S13: -0.1425 REMARK 3 S21: 0.1130 S22: 0.1614 S23: 0.0049 REMARK 3 S31: -0.2750 S32: -0.1899 S33: -0.0205 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|59 - A|88 } REMARK 3 ORIGIN FOR THE GROUP (A): 4.8523 13.2650 27.4034 REMARK 3 T TENSOR REMARK 3 T11: 0.1004 T22: 0.0976 REMARK 3 T33: 0.0545 T12: 0.0252 REMARK 3 T13: 0.0097 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.4550 L22: 1.0779 REMARK 3 L33: 2.3560 L12: -0.0405 REMARK 3 L13: 0.7003 L23: 0.0729 REMARK 3 S TENSOR REMARK 3 S11: -0.1165 S12: -0.2184 S13: -0.1872 REMARK 3 S21: 0.1447 S22: -0.0140 S23: 0.1411 REMARK 3 S31: 0.0894 S32: -0.0794 S33: 0.1304 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|89 - A|100 } REMARK 3 ORIGIN FOR THE GROUP (A): -5.3282 17.5581 24.8684 REMARK 3 T TENSOR REMARK 3 T11: 0.0767 T22: 0.1203 REMARK 3 T33: 0.1076 T12: 0.0015 REMARK 3 T13: 0.0101 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 0.0026 L22: 0.3935 REMARK 3 L33: 0.4538 L12: -0.1730 REMARK 3 L13: 0.1041 L23: -0.9762 REMARK 3 S TENSOR REMARK 3 S11: -0.1003 S12: 0.0824 S13: -0.2044 REMARK 3 S21: 0.2322 S22: 0.0359 S23: 0.3082 REMARK 3 S31: 0.1422 S32: -0.1234 S33: 0.0644 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|101 - A|108 } REMARK 3 ORIGIN FOR THE GROUP (A): -1.7573 27.9943 25.6142 REMARK 3 T TENSOR REMARK 3 T11: 0.1470 T22: 0.1511 REMARK 3 T33: 0.0730 T12: 0.0325 REMARK 3 T13: 0.0066 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.0120 L22: 0.8257 REMARK 3 L33: 0.0002 L12: -0.1429 REMARK 3 L13: -0.3524 L23: -0.7881 REMARK 3 S TENSOR REMARK 3 S11: -0.0658 S12: -0.0305 S13: 0.0589 REMARK 3 S21: 0.3163 S22: 0.0758 S23: -0.0151 REMARK 3 S31: 0.1249 S32: 0.1961 S33: -0.0100 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|109 - A|114 } REMARK 3 ORIGIN FOR THE GROUP (A): 2.9669 31.5097 17.9730 REMARK 3 T TENSOR REMARK 3 T11: 0.0920 T22: 0.1770 REMARK 3 T33: 0.1140 T12: -0.0190 REMARK 3 T13: -0.0031 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 0.5760 L22: 0.5131 REMARK 3 L33: 0.0575 L12: 0.7939 REMARK 3 L13: -0.0197 L23: 0.7229 REMARK 3 S TENSOR REMARK 3 S11: 0.0977 S12: -0.0500 S13: -0.2102 REMARK 3 S21: 0.0044 S22: -0.1310 S23: -0.1138 REMARK 3 S31: -0.1822 S32: 0.1739 S33: 0.0333 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { A|115 - A|129 } REMARK 3 ORIGIN FOR THE GROUP (A): -8.6443 28.3706 8.1307 REMARK 3 T TENSOR REMARK 3 T11: 0.1282 T22: 0.2219 REMARK 3 T33: 0.1334 T12: 0.0474 REMARK 3 T13: -0.0803 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.6759 L22: 0.0804 REMARK 3 L33: 1.4757 L12: 0.8716 REMARK 3 L13: -0.1651 L23: 1.5912 REMARK 3 S TENSOR REMARK 3 S11: -0.0691 S12: 0.1678 S13: 0.1039 REMARK 3 S21: -0.1290 S22: -0.0561 S23: 0.3297 REMARK 3 S31: -0.1719 S32: -0.2738 S33: 0.1252 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6F2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1200006712. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19187 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 39.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 1.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H87 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE PH 4.6, 200 TO REMARK 280 800 SODIUM CHLORIDE, 100 MM POTASSIUM PHOSPHATE MONOBASIC. TB- REMARK 280 XO4 WAS DIRECTLY MIXED WITH THE PROTEIN SOLUTION AT A FINAL REMARK 280 CONCENTRATION OF 100 MM PRIOR TO CRYSTALLIZATION., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.70200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.17950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.17950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.05300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.17950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.17950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.35100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.17950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.17950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.05300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.17950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.17950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.35100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.70200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 350 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 452 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 478 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H2 LYS A 1 OG1 THR A 40 1.45 REMARK 500 H1 LYS A 1 O HOH A 365 1.48 REMARK 500 H3 LYS A 1 O HOH A 311 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TB A 201 TB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 101 OD2 REMARK 620 2 HOH A 342 O 58.2 REMARK 620 3 HOH A 483 O 105.7 52.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TB A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 DBREF 6F2K A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET TB A 201 1 HET CL A 202 1 HET CL A 203 1 HET CL A 204 1 HETNAM TB TERBIUM(III) ION HETNAM CL CHLORIDE ION FORMUL 2 TB TB 3+ FORMUL 3 CL 3(CL 1-) FORMUL 6 HOH *190(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 SER A 100 1 13 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 ASP A 119 ARG A 125 5 7 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.03 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.05 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.06 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.03 LINK OD2 ASP A 101 TB TB A 201 1555 1555 2.84 LINK TB TB A 201 O HOH A 342 1555 1555 2.78 LINK TB TB A 201 O HOH A 483 1555 1555 3.30 SITE 1 AC1 2 ASP A 101 HOH A 342 SITE 1 AC2 3 ASN A 65 PRO A 79 HOH A 429 SITE 1 AC3 5 GLY A 67 ARG A 68 THR A 69 SER A 72 SITE 2 AC3 5 HOH A 450 SITE 1 AC4 3 TYR A 23 ASN A 113 HOH A 419 CRYST1 78.359 78.359 37.404 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012762 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026735 0.00000