PDB Short entry for 6F58 HEADER TRANSCRIPTION 01-DEC-17 6F58 TITLE CRYSTAL STRUCTURE OF HUMAN BRACHYURY (T) IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*AP*AP*TP*TP*TP*CP*AP*CP*AP*CP*CP*TP*AP*GP*GP*TP*GP*TP*GP*AP*AP*AP* COMPND 4 TP*T)-3'); COMPND 5 CHAIN: C, D; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BRACHYURY PROTEIN; COMPND 9 CHAIN: A, B; COMPND 10 SYNONYM: PROTEIN T; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHORDOMA, BRACHYURY, T-BOX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.A.NEWMAN,A.E.GAVARD,T.KROJER,L.SHRESTHA,N.A.BURGESS-BROWN,F.VON AUTHOR 2 DELFT,C.H.ARROWSMITH,A.EDWARDS,C.BOUNTRA,O.GILEADI REVDAT 2 17-JAN-24 6F58 1 REMARK REVDAT 1 13-DEC-17 6F58 0 JRNL AUTH J.A.NEWMAN,A.E.GAVARD,T.KROJER,L.SHRESTHA,N.A.BURGESS-BROWN, JRNL AUTH 2 F.VON DELFT,C.H.ARROWSMITH,A.EDWARDS,C.BOUNTRA,O.GILEADI JRNL TITL CRYSTAL STRUCTURE OF HUMAN BRACHYURY (T) IN COMPLEX WITH DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.130 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 51343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6517 - 5.8888 0.91 2649 136 0.2258 0.2473 REMARK 3 2 5.8888 - 4.6800 0.93 2664 130 0.2100 0.2733 REMARK 3 3 4.6800 - 4.0902 0.94 2719 137 0.1869 0.2056 REMARK 3 4 4.0902 - 3.7170 0.92 2658 146 0.2013 0.2341 REMARK 3 5 3.7170 - 3.4510 0.91 2651 108 0.2198 0.2409 REMARK 3 6 3.4510 - 3.2478 0.92 2682 139 0.2111 0.2668 REMARK 3 7 3.2478 - 3.0853 0.94 2689 142 0.2305 0.2941 REMARK 3 8 3.0853 - 2.9511 0.96 2845 177 0.2613 0.2870 REMARK 3 9 2.9511 - 2.8376 0.97 2762 131 0.2772 0.3432 REMARK 3 10 2.8376 - 2.7398 0.96 2805 176 0.2737 0.3129 REMARK 3 11 2.7398 - 2.6542 0.96 2703 157 0.2869 0.3151 REMARK 3 12 2.6542 - 2.5783 0.96 2786 139 0.3024 0.4775 REMARK 3 13 2.5783 - 2.5105 0.93 2664 148 0.3023 0.3497 REMARK 3 14 2.5105 - 2.4493 0.94 2730 132 0.3145 0.4060 REMARK 3 15 2.4493 - 2.3936 0.95 2767 137 0.3215 0.3770 REMARK 3 16 2.3936 - 2.3427 0.95 2728 138 0.3178 0.3495 REMARK 3 17 2.3427 - 2.2959 0.95 2778 148 0.3264 0.3434 REMARK 3 18 2.2959 - 2.2526 0.87 2492 150 0.3424 0.4008 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3988 REMARK 3 ANGLE : 0.682 5598 REMARK 3 CHIRALITY : 0.044 607 REMARK 3 PLANARITY : 0.005 552 REMARK 3 DIHEDRAL : 17.195 2197 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6F58 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007752. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27866 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 29.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.68900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1XBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG300 -- 0.1M CITRATE PH 4.2, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.55450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 39 REMARK 465 GLY A 113 REMARK 465 LYS A 114 REMARK 465 PRO A 115 REMARK 465 GLU A 116 REMARK 465 PRO A 117 REMARK 465 GLN A 118 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 MET B 39 REMARK 465 GLY B 113 REMARK 465 LYS B 114 REMARK 465 PRO B 115 REMARK 465 GLU B 116 REMARK 465 PRO B 117 REMARK 465 GLN B 118 REMARK 465 LYS B 221 REMARK 465 GLU B 222 REMARK 465 ARG B 223 REMARK 465 SER B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 465 HIS B 230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA C 1 O5' C5' C4' O4' C3' C2' C1' REMARK 470 DA C 1 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA C 1 C2 N3 C4 REMARK 470 DT D 24 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT D 24 C7 C6 REMARK 470 GLU B 50 CG CD OE1 OE2 REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 411 O HOH A 500 1.83 REMARK 500 O HOH B 387 O HOH B 399 1.89 REMARK 500 O HOH D 142 O HOH D 146 1.96 REMARK 500 OP1 DT D 3 O HOH D 101 1.97 REMARK 500 OP2 DG D 19 O HOH D 102 1.99 REMARK 500 O HOH D 126 O HOH D 140 1.99 REMARK 500 O HOH B 368 O HOH B 388 2.00 REMARK 500 OP2 DT D 5 O HOH D 103 2.01 REMARK 500 O HOH D 138 O HOH A 482 2.01 REMARK 500 OD2 ASP B 93 O HOH B 301 2.02 REMARK 500 OE2 GLU B 47 O HOH B 302 2.02 REMARK 500 O HOH A 485 O HOH A 504 2.05 REMARK 500 O HOH D 124 O HOH A 424 2.08 REMARK 500 O HOH B 402 O HOH B 406 2.10 REMARK 500 O HOH D 136 O HOH D 137 2.11 REMARK 500 O HOH C 104 O HOH A 477 2.12 REMARK 500 OP2 DC D 6 O HOH D 104 2.12 REMARK 500 O HOH C 135 O HOH C 150 2.13 REMARK 500 O HOH A 490 O HOH A 511 2.14 REMARK 500 O HOH C 158 O HOH C 160 2.15 REMARK 500 O HOH A 463 O HOH A 495 2.16 REMARK 500 O HOH A 443 O HOH A 455 2.18 REMARK 500 O HOH C 138 O HOH C 142 2.18 REMARK 500 O HOH A 433 O HOH A 489 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 515 O HOH B 400 1655 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 14 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG D 14 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 59 102.01 72.93 REMARK 500 PHE A 143 54.48 -93.06 REMARK 500 LEU A 152 99.96 -49.46 REMARK 500 THR B 59 111.02 65.50 REMARK 500 PHE B 143 57.69 -93.01 REMARK 500 LEU B 152 45.86 -81.62 REMARK 500 LEU B 218 32.88 -82.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 100 ARG A 101 149.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 162 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 517 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 518 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B 406 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 407 DISTANCE = 6.16 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 66 O REMARK 620 2 THR A 149 OG1 75.2 REMARK 620 3 LYS A 151 O 103.3 86.3 REMARK 620 4 ASN A 153 OD1 73.4 135.0 70.7 REMARK 620 5 GLN A 157 OE1 94.8 108.1 159.4 106.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 DBREF 6F58 C 1 24 PDB 6F58 6F58 1 24 DBREF 6F58 D 1 24 PDB 6F58 6F58 1 24 DBREF 6F58 A 39 224 UNP O15178 BRAC_HUMAN 39 224 DBREF 6F58 B 39 224 UNP O15178 BRAC_HUMAN 39 224 SEQADV 6F58 MET A 39 UNP O15178 GLU 39 INITIATING METHIONINE SEQADV 6F58 GLY A 40 UNP O15178 ARG 40 CONFLICT SEQADV 6F58 HIS A 225 UNP O15178 EXPRESSION TAG SEQADV 6F58 HIS A 226 UNP O15178 EXPRESSION TAG SEQADV 6F58 HIS A 227 UNP O15178 EXPRESSION TAG SEQADV 6F58 HIS A 228 UNP O15178 EXPRESSION TAG SEQADV 6F58 HIS A 229 UNP O15178 EXPRESSION TAG SEQADV 6F58 HIS A 230 UNP O15178 EXPRESSION TAG SEQADV 6F58 MET B 39 UNP O15178 GLU 39 INITIATING METHIONINE SEQADV 6F58 GLY B 40 UNP O15178 ARG 40 CONFLICT SEQADV 6F58 HIS B 225 UNP O15178 EXPRESSION TAG SEQADV 6F58 HIS B 226 UNP O15178 EXPRESSION TAG SEQADV 6F58 HIS B 227 UNP O15178 EXPRESSION TAG SEQADV 6F58 HIS B 228 UNP O15178 EXPRESSION TAG SEQADV 6F58 HIS B 229 UNP O15178 EXPRESSION TAG SEQADV 6F58 HIS B 230 UNP O15178 EXPRESSION TAG SEQRES 1 C 24 DA DA DT DT DT DC DA DC DA DC DC DT DA SEQRES 2 C 24 DG DG DT DG DT DG DA DA DA DT DT SEQRES 1 D 24 DA DA DT DT DT DC DA DC DA DC DC DT DA SEQRES 2 D 24 DG DG DT DG DT DG DA DA DA DT DT SEQRES 1 A 192 MET GLY GLU LEU ARG VAL GLY LEU GLU GLU SER GLU LEU SEQRES 2 A 192 TRP LEU ARG PHE LYS GLU LEU THR ASN GLU MET ILE VAL SEQRES 3 A 192 THR LYS ASN GLY ARG ARG MET PHE PRO VAL LEU LYS VAL SEQRES 4 A 192 ASN VAL SER GLY LEU ASP PRO ASN ALA MET TYR SER PHE SEQRES 5 A 192 LEU LEU ASP PHE VAL ALA ALA ASP ASN HIS ARG TRP LYS SEQRES 6 A 192 TYR VAL ASN GLY GLU TRP VAL PRO GLY GLY LYS PRO GLU SEQRES 7 A 192 PRO GLN ALA PRO SER CYS VAL TYR ILE HIS PRO ASP SER SEQRES 8 A 192 PRO ASN PHE GLY ALA HIS TRP MET LYS ALA PRO VAL SER SEQRES 9 A 192 PHE SER LYS VAL LYS LEU THR ASN LYS LEU ASN GLY GLY SEQRES 10 A 192 GLY GLN ILE MET LEU ASN SER LEU HIS LYS TYR GLU PRO SEQRES 11 A 192 ARG ILE HIS ILE VAL ARG VAL GLY GLY PRO GLN ARG MET SEQRES 12 A 192 ILE THR SER HIS CYS PHE PRO GLU THR GLN PHE ILE ALA SEQRES 13 A 192 VAL THR ALA TYR GLN ASN GLU GLU ILE THR ALA LEU LYS SEQRES 14 A 192 ILE LYS TYR ASN PRO PHE ALA LYS ALA PHE LEU ASP ALA SEQRES 15 A 192 LYS GLU ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 192 MET GLY GLU LEU ARG VAL GLY LEU GLU GLU SER GLU LEU SEQRES 2 B 192 TRP LEU ARG PHE LYS GLU LEU THR ASN GLU MET ILE VAL SEQRES 3 B 192 THR LYS ASN GLY ARG ARG MET PHE PRO VAL LEU LYS VAL SEQRES 4 B 192 ASN VAL SER GLY LEU ASP PRO ASN ALA MET TYR SER PHE SEQRES 5 B 192 LEU LEU ASP PHE VAL ALA ALA ASP ASN HIS ARG TRP LYS SEQRES 6 B 192 TYR VAL ASN GLY GLU TRP VAL PRO GLY GLY LYS PRO GLU SEQRES 7 B 192 PRO GLN ALA PRO SER CYS VAL TYR ILE HIS PRO ASP SER SEQRES 8 B 192 PRO ASN PHE GLY ALA HIS TRP MET LYS ALA PRO VAL SER SEQRES 9 B 192 PHE SER LYS VAL LYS LEU THR ASN LYS LEU ASN GLY GLY SEQRES 10 B 192 GLY GLN ILE MET LEU ASN SER LEU HIS LYS TYR GLU PRO SEQRES 11 B 192 ARG ILE HIS ILE VAL ARG VAL GLY GLY PRO GLN ARG MET SEQRES 12 B 192 ILE THR SER HIS CYS PHE PRO GLU THR GLN PHE ILE ALA SEQRES 13 B 192 VAL THR ALA TYR GLN ASN GLU GLU ILE THR ALA LEU LYS SEQRES 14 B 192 ILE LYS TYR ASN PRO PHE ALA LYS ALA PHE LEU ASP ALA SEQRES 15 B 192 LYS GLU ARG SER HIS HIS HIS HIS HIS HIS HET NA A 301 1 HETNAM NA SODIUM ION FORMUL 5 NA NA 1+ FORMUL 6 HOH *335(H2 O) HELIX 1 AA1 GLU A 48 GLU A 57 1 10 HELIX 2 AA2 GLY A 133 LYS A 138 1 6 HELIX 3 AA3 PRO A 188 GLN A 191 5 4 HELIX 4 AA4 ASN A 200 ASN A 211 1 12 HELIX 5 AA5 PRO A 212 ALA A 216 5 5 HELIX 6 AA6 PHE A 217 ARG A 223 1 7 HELIX 7 AA7 GLU B 48 LEU B 58 1 11 HELIX 8 AA8 GLY B 133 LYS B 138 1 6 HELIX 9 AA9 PRO B 188 GLN B 191 5 4 HELIX 10 AB1 ASN B 200 ASN B 211 1 12 HELIX 11 AB2 PRO B 212 LEU B 218 5 7 SHEET 1 A 2 ARG A 43 LEU A 46 0 SHEET 2 A 2 VAL A 77 SER A 80 -1 N SER A 80 O ARG A 43 SHEET 1 B 2 GLU A 61 ILE A 63 0 SHEET 2 B 2 ILE A 193 VAL A 195 1 N ILE A 193 O MET A 62 SHEET 1 C 3 TYR A 88 ALA A 96 0 SHEET 2 C 3 TYR A 166 ARG A 174 -1 N VAL A 173 O SER A 89 SHEET 3 C 3 ILE A 182 CYS A 186 -1 N HIS A 185 O ILE A 170 SHEET 1 D 2 TRP A 102 TYR A 104 0 SHEET 2 D 2 TRP A 109 PRO A 111 -1 N VAL A 110 O LYS A 103 SHEET 1 E 2 ARG B 43 LEU B 46 0 SHEET 2 E 2 VAL B 77 SER B 80 -1 N SER B 80 O ARG B 43 SHEET 1 F 2 GLU B 61 ILE B 63 0 SHEET 2 F 2 ILE B 193 VAL B 195 1 N ILE B 193 O MET B 62 SHEET 1 G 3 TYR B 88 ALA B 96 0 SHEET 2 G 3 TYR B 166 ARG B 174 -1 N VAL B 173 O SER B 89 SHEET 3 G 3 ILE B 182 CYS B 186 -1 N HIS B 185 O ILE B 170 SHEET 1 H 2 TRP B 102 VAL B 105 0 SHEET 2 H 2 GLU B 108 PRO B 111 -1 N VAL B 110 O LYS B 103 SHEET 1 I 2 LYS B 147 THR B 149 0 SHEET 2 I 2 GLN B 157 MET B 159 1 N ILE B 158 O LYS B 147 LINK O LYS A 66 NA NA A 301 1555 1555 2.60 LINK OG1 THR A 149 NA NA A 301 1555 1555 2.51 LINK O LYS A 151 NA NA A 301 1555 1555 2.44 LINK OD1 ASN A 153 NA NA A 301 1555 1555 2.73 LINK OE1 GLN A 157 NA NA A 301 1555 1555 2.45 CISPEP 1 PHE A 72 PRO A 73 0 -2.92 CISPEP 2 SER A 129 PRO A 130 0 -7.98 CISPEP 3 PHE B 72 PRO B 73 0 0.41 CISPEP 4 SER B 129 PRO B 130 0 -7.99 SITE 1 AC1 5 LYS A 66 THR A 149 LYS A 151 ASN A 153 SITE 2 AC1 5 GLN A 157 CRYST1 74.978 37.109 110.796 90.00 103.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013337 0.000000 0.003322 0.00000 SCALE2 0.000000 0.026948 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009301 0.00000