PDB Short entry for 6F59 HEADER TRANSCRIPTION 01-DEC-17 6F59 TITLE CRYSTAL STRUCTURE OF HUMAN BRACHYURY (T) G177D VARIANT IN COMPLEX WITH TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (26-MER); COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BRACHYURY PROTEIN; COMPND 7 CHAIN: A, B; COMPND 8 SYNONYM: PROTEIN T; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 VARIANT: G177D; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHORDOMA, BRACHYURY, T-BOX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.A.NEWMAN,A.E.GAVARD,T.KROJER,L.SHRESTHA,N.A.BURGESS-BROWN,F.VON AUTHOR 2 DELFT,C.H.ARROWSMITH,A.EDWARDS,C.BOUNTRA,O.GILEADI REVDAT 2 17-JAN-24 6F59 1 REMARK REVDAT 1 13-DEC-17 6F59 0 JRNL AUTH J.A.NEWMAN,A.E.GAVARD,T.KROJER,L.SHRESTHA,N.A.BURGESS-BROWN, JRNL AUTH 2 F.VON DELFT,C.H.ARROWSMITH,A.EDWARDS,C.BOUNTRA,O.GILEADI JRNL TITL CRYSTAL STRUCTURE OF HUMAN BRACHYURY (T) G177D VARIANT IN JRNL TITL 2 COMPLEX WITH DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 45750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.8729 - 5.4192 1.00 3034 154 0.1890 0.2193 REMARK 3 2 5.4192 - 4.3015 1.00 2845 170 0.1807 0.1959 REMARK 3 3 4.3015 - 3.7578 1.00 2785 150 0.1876 0.2197 REMARK 3 4 3.7578 - 3.4143 1.00 2760 150 0.2299 0.2529 REMARK 3 5 3.4143 - 3.1695 1.00 2761 144 0.2389 0.2804 REMARK 3 6 3.1695 - 2.9827 1.00 2727 150 0.2706 0.3299 REMARK 3 7 2.9827 - 2.8333 1.00 2740 136 0.2851 0.3104 REMARK 3 8 2.8333 - 2.7099 0.99 2708 138 0.2882 0.2910 REMARK 3 9 2.7099 - 2.6056 0.99 2697 134 0.2817 0.3348 REMARK 3 10 2.6056 - 2.5157 0.99 2693 131 0.2872 0.3359 REMARK 3 11 2.5157 - 2.4370 0.98 2651 149 0.2830 0.3117 REMARK 3 12 2.4370 - 2.3674 0.98 2635 154 0.2838 0.3085 REMARK 3 13 2.3674 - 2.3050 0.98 2663 124 0.2876 0.3029 REMARK 3 14 2.3050 - 2.2488 0.97 2625 144 0.3098 0.3792 REMARK 3 15 2.2488 - 2.1977 0.97 2591 136 0.3356 0.3970 REMARK 3 16 2.1977 - 2.1509 0.95 2532 139 0.3511 0.3927 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4207 REMARK 3 ANGLE : 0.963 5911 REMARK 3 CHIRALITY : 0.054 640 REMARK 3 PLANARITY : 0.006 576 REMARK 3 DIHEDRAL : 16.492 2311 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6F59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200007768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46387 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 144.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 25.50 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 23.10 REMARK 200 R MERGE FOR SHELL (I) : 2.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1XBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 56% MPD -- 0.1M SPG PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.23400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 216.35100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.11700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 144.23400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.11700 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 216.35100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 404 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 344 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 39 REMARK 465 GLY A 40 REMARK 465 GLY A 112 REMARK 465 GLY A 113 REMARK 465 LYS A 114 REMARK 465 PRO A 115 REMARK 465 GLU A 116 REMARK 465 PRO A 117 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 MET B 39 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 465 HIS B 230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DT D 19 O HOH D 101 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT D 24 O3' DT D 25 P -0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 15 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG D 15 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG D 15 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 59 101.56 62.77 REMARK 500 ASN A 106 68.08 29.26 REMARK 500 PHE A 143 53.82 -93.29 REMARK 500 ASN A 153 26.88 -146.20 REMARK 500 THR B 59 107.87 70.18 REMARK 500 HIS B 100 -157.87 -132.92 REMARK 500 PRO B 117 -140.64 -63.56 REMARK 500 PHE B 143 54.25 -96.48 REMARK 500 ASN B 153 67.52 -164.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 66 O REMARK 620 2 ASN A 67 O 86.1 REMARK 620 3 THR A 149 OG1 70.4 88.9 REMARK 620 4 LYS A 151 O 95.3 167.5 80.0 REMARK 620 5 ASN A 153 OD1 93.8 86.7 163.8 105.6 REMARK 620 6 GLN A 157 OE1 162.3 83.0 123.2 98.3 71.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 302 DBREF 6F59 C 1 26 PDB 6F59 6F59 1 26 DBREF 6F59 D 1 26 PDB 6F59 6F59 1 26 DBREF 6F59 A 41 224 UNP O15178 BRAC_HUMAN 41 224 DBREF 6F59 B 41 224 UNP O15178 BRAC_HUMAN 41 224 SEQADV 6F59 MET A 39 UNP O15178 INITIATING METHIONINE SEQADV 6F59 GLY A 40 UNP O15178 EXPRESSION TAG SEQADV 6F59 ASP A 177 UNP O15178 GLY 177 CONFLICT SEQADV 6F59 HIS A 225 UNP O15178 EXPRESSION TAG SEQADV 6F59 HIS A 226 UNP O15178 EXPRESSION TAG SEQADV 6F59 HIS A 227 UNP O15178 EXPRESSION TAG SEQADV 6F59 HIS A 228 UNP O15178 EXPRESSION TAG SEQADV 6F59 HIS A 229 UNP O15178 EXPRESSION TAG SEQADV 6F59 HIS A 230 UNP O15178 EXPRESSION TAG SEQADV 6F59 MET B 39 UNP O15178 INITIATING METHIONINE SEQADV 6F59 GLY B 40 UNP O15178 EXPRESSION TAG SEQADV 6F59 ASP B 177 UNP O15178 GLY 177 CONFLICT SEQADV 6F59 HIS B 225 UNP O15178 EXPRESSION TAG SEQADV 6F59 HIS B 226 UNP O15178 EXPRESSION TAG SEQADV 6F59 HIS B 227 UNP O15178 EXPRESSION TAG SEQADV 6F59 HIS B 228 UNP O15178 EXPRESSION TAG SEQADV 6F59 HIS B 229 UNP O15178 EXPRESSION TAG SEQADV 6F59 HIS B 230 UNP O15178 EXPRESSION TAG SEQRES 1 C 26 DG DA DA DT DT DT DC DA DC DA DC DC DT SEQRES 2 C 26 DA DG DG DT DG DT DG DA DA DA DT DT DC SEQRES 1 D 26 DG DA DA DT DT DT DC DA DC DA DC DC DT SEQRES 2 D 26 DA DG DG DT DG DT DG DA DA DA DT DT DC SEQRES 1 A 192 MET GLY GLU LEU ARG VAL GLY LEU GLU GLU SER GLU LEU SEQRES 2 A 192 TRP LEU ARG PHE LYS GLU LEU THR ASN GLU MET ILE VAL SEQRES 3 A 192 THR LYS ASN GLY ARG ARG MET PHE PRO VAL LEU LYS VAL SEQRES 4 A 192 ASN VAL SER GLY LEU ASP PRO ASN ALA MET TYR SER PHE SEQRES 5 A 192 LEU LEU ASP PHE VAL ALA ALA ASP ASN HIS ARG TRP LYS SEQRES 6 A 192 TYR VAL ASN GLY GLU TRP VAL PRO GLY GLY LYS PRO GLU SEQRES 7 A 192 PRO GLN ALA PRO SER CYS VAL TYR ILE HIS PRO ASP SER SEQRES 8 A 192 PRO ASN PHE GLY ALA HIS TRP MET LYS ALA PRO VAL SER SEQRES 9 A 192 PHE SER LYS VAL LYS LEU THR ASN LYS LEU ASN GLY GLY SEQRES 10 A 192 GLY GLN ILE MET LEU ASN SER LEU HIS LYS TYR GLU PRO SEQRES 11 A 192 ARG ILE HIS ILE VAL ARG VAL GLY ASP PRO GLN ARG MET SEQRES 12 A 192 ILE THR SER HIS CYS PHE PRO GLU THR GLN PHE ILE ALA SEQRES 13 A 192 VAL THR ALA TYR GLN ASN GLU GLU ILE THR ALA LEU LYS SEQRES 14 A 192 ILE LYS TYR ASN PRO PHE ALA LYS ALA PHE LEU ASP ALA SEQRES 15 A 192 LYS GLU ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 192 MET GLY GLU LEU ARG VAL GLY LEU GLU GLU SER GLU LEU SEQRES 2 B 192 TRP LEU ARG PHE LYS GLU LEU THR ASN GLU MET ILE VAL SEQRES 3 B 192 THR LYS ASN GLY ARG ARG MET PHE PRO VAL LEU LYS VAL SEQRES 4 B 192 ASN VAL SER GLY LEU ASP PRO ASN ALA MET TYR SER PHE SEQRES 5 B 192 LEU LEU ASP PHE VAL ALA ALA ASP ASN HIS ARG TRP LYS SEQRES 6 B 192 TYR VAL ASN GLY GLU TRP VAL PRO GLY GLY LYS PRO GLU SEQRES 7 B 192 PRO GLN ALA PRO SER CYS VAL TYR ILE HIS PRO ASP SER SEQRES 8 B 192 PRO ASN PHE GLY ALA HIS TRP MET LYS ALA PRO VAL SER SEQRES 9 B 192 PHE SER LYS VAL LYS LEU THR ASN LYS LEU ASN GLY GLY SEQRES 10 B 192 GLY GLN ILE MET LEU ASN SER LEU HIS LYS TYR GLU PRO SEQRES 11 B 192 ARG ILE HIS ILE VAL ARG VAL GLY ASP PRO GLN ARG MET SEQRES 12 B 192 ILE THR SER HIS CYS PHE PRO GLU THR GLN PHE ILE ALA SEQRES 13 B 192 VAL THR ALA TYR GLN ASN GLU GLU ILE THR ALA LEU LYS SEQRES 14 B 192 ILE LYS TYR ASN PRO PHE ALA LYS ALA PHE LEU ASP ALA SEQRES 15 B 192 LYS GLU ARG SER HIS HIS HIS HIS HIS HIS HET NA A 301 1 HET MPD A 302 8 HETNAM NA SODIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 5 NA NA 1+ FORMUL 6 MPD C6 H14 O2 FORMUL 7 HOH *112(H2 O) HELIX 1 AA1 GLU A 48 LEU A 58 1 11 HELIX 2 AA2 GLY A 133 ALA A 139 1 7 HELIX 3 AA3 PRO A 188 GLN A 191 5 4 HELIX 4 AA4 ASN A 200 ASN A 211 1 12 HELIX 5 AA5 ALA A 214 SER A 224 1 11 HELIX 6 AA6 GLU B 48 LEU B 58 1 11 HELIX 7 AA7 GLY B 133 ALA B 139 1 7 HELIX 8 AA8 PRO B 188 GLN B 191 5 4 HELIX 9 AA9 ASN B 200 ASN B 211 1 12 HELIX 10 AB1 ALA B 214 SER B 224 1 11 SHEET 1 AA1 3 ARG A 43 LEU A 46 0 SHEET 2 AA1 3 LYS A 76 SER A 80 -1 O ASN A 78 N GLY A 45 SHEET 3 AA1 3 VAL A 141 SER A 142 -1 O VAL A 141 N VAL A 77 SHEET 1 AA2 5 GLU A 61 ILE A 63 0 SHEET 2 AA2 5 PHE A 192 VAL A 195 1 O VAL A 195 N MET A 62 SHEET 3 AA2 5 LYS A 165 ARG A 174 -1 N TYR A 166 O PHE A 192 SHEET 4 AA2 5 MET A 87 ALA A 96 -1 N VAL A 95 O GLU A 167 SHEET 5 AA2 5 ASN A 131 PHE A 132 -1 O ASN A 131 N TYR A 88 SHEET 1 AA3 4 TYR A 124 ILE A 125 0 SHEET 2 AA3 4 MET A 87 ALA A 96 -1 N LEU A 92 O TYR A 124 SHEET 3 AA3 4 LYS A 165 ARG A 174 -1 O GLU A 167 N VAL A 95 SHEET 4 AA3 4 ILE A 182 CYS A 186 -1 O HIS A 185 N ILE A 170 SHEET 1 AA4 3 ARG A 69 ARG A 70 0 SHEET 2 AA4 3 LYS A 147 THR A 149 -1 O LEU A 148 N ARG A 69 SHEET 3 AA4 3 GLN A 157 MET A 159 1 O ILE A 158 N THR A 149 SHEET 1 AA5 2 LYS A 103 VAL A 105 0 SHEET 2 AA5 2 GLU A 108 VAL A 110 -1 O GLU A 108 N VAL A 105 SHEET 1 AA6 3 ARG B 43 LEU B 46 0 SHEET 2 AA6 3 LYS B 76 SER B 80 -1 O ASN B 78 N GLY B 45 SHEET 3 AA6 3 VAL B 141 SER B 142 -1 O VAL B 141 N VAL B 77 SHEET 1 AA7 5 GLU B 61 ILE B 63 0 SHEET 2 AA7 5 PHE B 192 VAL B 195 1 O VAL B 195 N MET B 62 SHEET 3 AA7 5 LYS B 165 ARG B 174 -1 N TYR B 166 O PHE B 192 SHEET 4 AA7 5 MET B 87 ALA B 96 -1 N SER B 89 O VAL B 173 SHEET 5 AA7 5 ASN B 131 PHE B 132 -1 O ASN B 131 N TYR B 88 SHEET 1 AA8 4 TYR B 124 ILE B 125 0 SHEET 2 AA8 4 MET B 87 ALA B 96 -1 N LEU B 92 O TYR B 124 SHEET 3 AA8 4 LYS B 165 ARG B 174 -1 O VAL B 173 N SER B 89 SHEET 4 AA8 4 ILE B 182 CYS B 186 -1 O THR B 183 N ILE B 172 SHEET 1 AA9 3 ARG B 69 ARG B 70 0 SHEET 2 AA9 3 LYS B 147 THR B 149 -1 O LEU B 148 N ARG B 69 SHEET 3 AA9 3 ILE B 158 MET B 159 1 O ILE B 158 N LYS B 147 SHEET 1 AB1 2 TRP B 102 VAL B 105 0 SHEET 2 AB1 2 GLU B 108 PRO B 111 -1 O VAL B 110 N LYS B 103 LINK O LYS A 66 NA NA A 301 1555 1555 2.39 LINK O ASN A 67 NA NA A 301 1555 1555 2.34 LINK OG1 THR A 149 NA NA A 301 1555 1555 2.45 LINK O LYS A 151 NA NA A 301 1555 1555 2.19 LINK OD1 ASN A 153 NA NA A 301 1555 1555 2.35 LINK OE1 GLN A 157 NA NA A 301 1555 1555 2.53 CISPEP 1 PHE A 72 PRO A 73 0 0.96 CISPEP 2 SER A 129 PRO A 130 0 -5.14 CISPEP 3 PHE B 72 PRO B 73 0 -1.20 CISPEP 4 SER B 129 PRO B 130 0 -9.72 SITE 1 AC1 6 LYS A 66 ASN A 67 THR A 149 LYS A 151 SITE 2 AC1 6 ASN A 153 GLN A 157 SITE 1 AC2 6 LEU A 42 TYR A 88 ILE A 172 THR A 183 SITE 2 AC2 6 HOH A 407 HOH A 429 CRYST1 75.270 75.270 288.468 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013286 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003467 0.00000