PDB Short entry for 6FDN HEADER NUCLEAR PROTEIN 26-DEC-17 6FDN TITLE RIO2 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE RIO2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RIO KINASE 2; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIOK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS KINASE, RIBOSOME, TRANSFERASE, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.FRIBOURG REVDAT 5 08-MAY-24 6FDN 1 REMARK REVDAT 4 09-OCT-19 6FDN 1 JRNL REVDAT 3 11-SEP-19 6FDN 1 JRNL REVDAT 2 28-AUG-19 6FDN 1 REMARK REVDAT 1 30-JAN-19 6FDN 0 JRNL AUTH F.MAURICE,N.PEREBASKINE,S.THORE,S.FRIBOURG JRNL TITL IN VITRO DIMERIZATION OF HUMAN RIO2 KINASE. JRNL REF RNA BIOL. V. 16 1633 2019 JRNL REFN ESSN 1555-8584 JRNL PMID 31390939 JRNL DOI 10.1080/15476286.2019.1653679 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 13179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 667 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 7 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.91 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2648 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2469 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2493 REMARK 3 BIN R VALUE (WORKING SET) : 0.2436 REMARK 3 BIN FREE R VALUE : 0.3014 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.85 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 155 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3924 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 87.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.46100 REMARK 3 B22 (A**2) : 7.96940 REMARK 3 B33 (A**2) : -5.50850 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.440 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.426 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.901 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.855 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4014 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5414 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1399 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 666 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4014 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 503 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4343 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.21 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.03 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 18.4852 -1.4174 -10.0474 REMARK 3 T TENSOR REMARK 3 T11: -0.2031 T22: -0.0433 REMARK 3 T33: -0.0866 T12: -0.0534 REMARK 3 T13: 0.0251 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 0.9540 L22: 2.4409 REMARK 3 L33: 1.5986 L12: 0.3634 REMARK 3 L13: 0.2929 L23: -0.2304 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: -0.1378 S13: 0.0700 REMARK 3 S21: 0.1172 S22: 0.0445 S23: 0.0453 REMARK 3 S31: 0.2305 S32: -0.1391 S33: -0.0235 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 6.3650 -4.5672 -29.3418 REMARK 3 T TENSOR REMARK 3 T11: -0.1789 T22: -0.1944 REMARK 3 T33: 0.0471 T12: -0.0334 REMARK 3 T13: -0.0374 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 2.0718 L22: 1.8391 REMARK 3 L33: 2.4964 L12: -1.4058 REMARK 3 L13: -1.5845 L23: 1.7053 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: -0.0272 S13: -0.1081 REMARK 3 S21: -0.0635 S22: -0.1268 S23: 0.1841 REMARK 3 S31: 0.0221 S32: 0.0877 S33: 0.1290 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FDN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1200008140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47430 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 70.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 88.49 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS D2, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.29600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.77200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.20250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.77200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.29600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.20250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 VAL A 4 REMARK 465 ASN A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 LEU A 9 REMARK 465 ARG A 10 REMARK 465 TYR A 11 REMARK 465 MET A 12 REMARK 465 SER A 13 REMARK 465 ARG A 14 REMARK 465 ASP A 15 REMARK 465 ASP A 16 REMARK 465 PHE A 17 REMARK 465 GLU A 24 REMARK 465 MET A 25 REMARK 465 GLY A 26 REMARK 465 MET A 27 REMARK 465 LYS A 28 REMARK 465 ASN A 29 REMARK 465 HIS A 30 REMARK 465 GLU A 31 REMARK 465 LEU A 44 REMARK 465 LYS A 45 REMARK 465 HIS A 46 REMARK 465 GLY A 47 REMARK 465 GLY A 48 REMARK 465 GLU A 65 REMARK 465 ARG A 66 REMARK 465 THR A 67 REMARK 465 LYS A 68 REMARK 465 THR A 69 REMARK 465 VAL A 70 REMARK 465 GLN A 71 REMARK 465 ARG A 129 REMARK 465 THR A 130 REMARK 465 SER A 131 REMARK 465 PHE A 132 REMARK 465 ARG A 133 REMARK 465 ASN A 134 REMARK 465 LEU A 135 REMARK 465 LYS A 136 REMARK 465 ASN A 137 REMARK 465 LYS A 138 REMARK 465 ARG A 139 REMARK 465 ASP A 140 REMARK 465 TYR A 141 REMARK 465 HIS A 142 REMARK 465 LYS A 143 REMARK 465 HIS A 144 REMARK 465 ARG A 145 REMARK 465 HIS A 146 REMARK 465 ASN A 147 REMARK 465 VAL A 148 REMARK 465 SER A 149 REMARK 465 ARG A 291 REMARK 465 ARG A 292 REMARK 465 GLU A 293 REMARK 465 ASP A 294 REMARK 465 THR A 295 REMARK 465 LEU A 296 REMARK 465 ASP A 297 REMARK 465 VAL A 298 REMARK 465 GLU A 299 REMARK 465 VAL A 300 REMARK 465 SER A 301 REMARK 465 ALA A 302 REMARK 465 SER A 303 REMARK 465 GLY A 304 REMARK 465 TYR A 305 REMARK 465 THR A 306 REMARK 465 LYS A 307 REMARK 465 GLU A 308 REMARK 465 MET A 309 REMARK 465 GLN A 310 REMARK 465 ALA A 311 REMARK 465 ASP A 312 REMARK 465 ASP A 313 REMARK 465 GLU A 314 REMARK 465 LEU A 315 REMARK 465 LEU A 316 REMARK 465 HIS A 317 REMARK 465 PRO A 318 REMARK 465 LEU A 319 REMARK 465 GLY A 320 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 VAL B 4 REMARK 465 ASN B 5 REMARK 465 VAL B 6 REMARK 465 ALA B 7 REMARK 465 LYS B 8 REMARK 465 LEU B 9 REMARK 465 ARG B 10 REMARK 465 TYR B 11 REMARK 465 ARG B 66 REMARK 465 THR B 67 REMARK 465 LYS B 68 REMARK 465 THR B 69 REMARK 465 VAL B 70 REMARK 465 GLU B 115 REMARK 465 GLU B 116 REMARK 465 GLY B 117 REMARK 465 GLY B 128 REMARK 465 ARG B 129 REMARK 465 THR B 130 REMARK 465 SER B 131 REMARK 465 PHE B 132 REMARK 465 ARG B 133 REMARK 465 ASN B 134 REMARK 465 LEU B 135 REMARK 465 LYS B 136 REMARK 465 ASN B 137 REMARK 465 LYS B 138 REMARK 465 ARG B 139 REMARK 465 ASP B 140 REMARK 465 TYR B 141 REMARK 465 HIS B 142 REMARK 465 LYS B 143 REMARK 465 HIS B 144 REMARK 465 ARG B 145 REMARK 465 HIS B 146 REMARK 465 ARG B 291 REMARK 465 ARG B 292 REMARK 465 GLU B 293 REMARK 465 ASP B 294 REMARK 465 THR B 295 REMARK 465 LEU B 296 REMARK 465 ASP B 297 REMARK 465 VAL B 298 REMARK 465 GLU B 299 REMARK 465 VAL B 300 REMARK 465 SER B 301 REMARK 465 ALA B 302 REMARK 465 SER B 303 REMARK 465 GLY B 304 REMARK 465 TYR B 305 REMARK 465 THR B 306 REMARK 465 LYS B 307 REMARK 465 GLU B 308 REMARK 465 MET B 309 REMARK 465 GLN B 310 REMARK 465 ALA B 311 REMARK 465 ASP B 312 REMARK 465 ASP B 313 REMARK 465 GLU B 314 REMARK 465 LEU B 315 REMARK 465 LEU B 316 REMARK 465 HIS B 317 REMARK 465 PRO B 318 REMARK 465 LEU B 319 REMARK 465 GLY B 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 118 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 53 C - N - CA ANGL. DEV. = 21.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 50 -97.27 -70.99 REMARK 500 LYS A 51 78.99 -54.28 REMARK 500 VAL A 52 18.32 -171.29 REMARK 500 LEU A 53 -119.55 85.05 REMARK 500 VAL A 97 -173.50 -66.35 REMARK 500 GLN A 100 100.04 -57.84 REMARK 500 GLU A 106 38.21 -144.17 REMARK 500 LEU A 151 -43.09 70.78 REMARK 500 ARG A 183 -113.62 47.89 REMARK 500 ASP A 228 28.15 -142.51 REMARK 500 PHE A 229 97.70 -63.62 REMARK 500 PHE A 247 73.09 -154.33 REMARK 500 PHE A 277 -25.87 64.06 REMARK 500 ASN B 29 -16.75 -150.61 REMARK 500 SER B 43 58.99 39.94 REMARK 500 LYS B 45 -73.47 63.52 REMARK 500 HIS B 46 34.13 -97.03 REMARK 500 MET B 101 36.26 -96.11 REMARK 500 GLU B 106 42.44 -148.52 REMARK 500 ARG B 183 -113.29 56.65 REMARK 500 ASP B 228 27.67 -141.54 REMARK 500 PHE B 229 98.37 -63.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 6FDN A 1 320 UNP Q9BVS4 RIOK2_HUMAN 1 320 DBREF 6FDN B 1 320 UNP Q9BVS4 RIOK2_HUMAN 1 320 SEQRES 1 A 320 MET GLY LYS VAL ASN VAL ALA LYS LEU ARG TYR MET SER SEQRES 2 A 320 ARG ASP ASP PHE ARG VAL LEU THR ALA VAL GLU MET GLY SEQRES 3 A 320 MET LYS ASN HIS GLU ILE VAL PRO GLY SER LEU ILE ALA SEQRES 4 A 320 SER ILE ALA SER LEU LYS HIS GLY GLY CYS ASN LYS VAL SEQRES 5 A 320 LEU ARG GLU LEU VAL LYS HIS LYS LEU ILE ALA TRP GLU SEQRES 6 A 320 ARG THR LYS THR VAL GLN GLY TYR ARG LEU THR ASN ALA SEQRES 7 A 320 GLY TYR ASP TYR LEU ALA LEU LYS THR LEU SER SER ARG SEQRES 8 A 320 GLN VAL VAL GLU SER VAL GLY ASN GLN MET GLY VAL GLY SEQRES 9 A 320 LYS GLU SER ASP ILE TYR ILE VAL ALA ASN GLU GLU GLY SEQRES 10 A 320 GLN GLN PHE ALA LEU LYS LEU HIS ARG LEU GLY ARG THR SEQRES 11 A 320 SER PHE ARG ASN LEU LYS ASN LYS ARG ASP TYR HIS LYS SEQRES 12 A 320 HIS ARG HIS ASN VAL SER TRP LEU TYR LEU SER ARG LEU SEQRES 13 A 320 SER ALA MET LYS GLU PHE ALA TYR MET LYS ALA LEU TYR SEQRES 14 A 320 GLU ARG LYS PHE PRO VAL PRO LYS PRO ILE ASP TYR ASN SEQRES 15 A 320 ARG HIS ALA VAL VAL MET GLU LEU ILE ASN GLY TYR PRO SEQRES 16 A 320 LEU CYS GLN ILE HIS HIS VAL GLU ASP PRO ALA SER VAL SEQRES 17 A 320 TYR ASP GLU ALA MET GLU LEU ILE VAL LYS LEU ALA ASN SEQRES 18 A 320 HIS GLY LEU ILE HIS GLY ASP PHE ASN GLU PHE ASN LEU SEQRES 19 A 320 ILE LEU ASP GLU SER ASP HIS ILE THR MET ILE ASP PHE SEQRES 20 A 320 PRO GLN MET VAL SER THR SER HIS PRO ASN ALA GLU TRP SEQRES 21 A 320 TYR PHE ASP ARG ASP VAL LYS CYS ILE LYS ASP PHE PHE SEQRES 22 A 320 MET LYS ARG PHE SER TYR GLU SER GLU LEU PHE PRO THR SEQRES 23 A 320 PHE LYS ASP ILE ARG ARG GLU ASP THR LEU ASP VAL GLU SEQRES 24 A 320 VAL SER ALA SER GLY TYR THR LYS GLU MET GLN ALA ASP SEQRES 25 A 320 ASP GLU LEU LEU HIS PRO LEU GLY SEQRES 1 B 320 MET GLY LYS VAL ASN VAL ALA LYS LEU ARG TYR MET SER SEQRES 2 B 320 ARG ASP ASP PHE ARG VAL LEU THR ALA VAL GLU MET GLY SEQRES 3 B 320 MET LYS ASN HIS GLU ILE VAL PRO GLY SER LEU ILE ALA SEQRES 4 B 320 SER ILE ALA SER LEU LYS HIS GLY GLY CYS ASN LYS VAL SEQRES 5 B 320 LEU ARG GLU LEU VAL LYS HIS LYS LEU ILE ALA TRP GLU SEQRES 6 B 320 ARG THR LYS THR VAL GLN GLY TYR ARG LEU THR ASN ALA SEQRES 7 B 320 GLY TYR ASP TYR LEU ALA LEU LYS THR LEU SER SER ARG SEQRES 8 B 320 GLN VAL VAL GLU SER VAL GLY ASN GLN MET GLY VAL GLY SEQRES 9 B 320 LYS GLU SER ASP ILE TYR ILE VAL ALA ASN GLU GLU GLY SEQRES 10 B 320 GLN GLN PHE ALA LEU LYS LEU HIS ARG LEU GLY ARG THR SEQRES 11 B 320 SER PHE ARG ASN LEU LYS ASN LYS ARG ASP TYR HIS LYS SEQRES 12 B 320 HIS ARG HIS ASN VAL SER TRP LEU TYR LEU SER ARG LEU SEQRES 13 B 320 SER ALA MET LYS GLU PHE ALA TYR MET LYS ALA LEU TYR SEQRES 14 B 320 GLU ARG LYS PHE PRO VAL PRO LYS PRO ILE ASP TYR ASN SEQRES 15 B 320 ARG HIS ALA VAL VAL MET GLU LEU ILE ASN GLY TYR PRO SEQRES 16 B 320 LEU CYS GLN ILE HIS HIS VAL GLU ASP PRO ALA SER VAL SEQRES 17 B 320 TYR ASP GLU ALA MET GLU LEU ILE VAL LYS LEU ALA ASN SEQRES 18 B 320 HIS GLY LEU ILE HIS GLY ASP PHE ASN GLU PHE ASN LEU SEQRES 19 B 320 ILE LEU ASP GLU SER ASP HIS ILE THR MET ILE ASP PHE SEQRES 20 B 320 PRO GLN MET VAL SER THR SER HIS PRO ASN ALA GLU TRP SEQRES 21 B 320 TYR PHE ASP ARG ASP VAL LYS CYS ILE LYS ASP PHE PHE SEQRES 22 B 320 MET LYS ARG PHE SER TYR GLU SER GLU LEU PHE PRO THR SEQRES 23 B 320 PHE LYS ASP ILE ARG ARG GLU ASP THR LEU ASP VAL GLU SEQRES 24 B 320 VAL SER ALA SER GLY TYR THR LYS GLU MET GLN ALA ASP SEQRES 25 B 320 ASP GLU LEU LEU HIS PRO LEU GLY HELIX 1 AA1 ARG A 18 VAL A 23 1 6 HELIX 2 AA2 PRO A 34 SER A 43 1 10 HELIX 3 AA3 LEU A 53 LYS A 58 1 6 HELIX 4 AA4 THR A 76 ARG A 91 1 16 HELIX 5 AA5 LEU A 153 ARG A 171 1 19 HELIX 6 AA6 CYS A 197 ILE A 199 5 3 HELIX 7 AA7 ASP A 204 HIS A 222 1 19 HELIX 8 AA8 ASN A 257 ARG A 276 1 20 HELIX 9 AA9 SER B 13 MET B 27 1 15 HELIX 10 AB1 PRO B 34 SER B 43 1 10 HELIX 11 AB2 GLY B 48 HIS B 59 1 12 HELIX 12 AB3 THR B 76 ARG B 91 1 16 HELIX 13 AB4 SER B 149 ARG B 171 1 23 HELIX 14 AB5 CYS B 197 ILE B 199 5 3 HELIX 15 AB6 ASP B 204 HIS B 222 1 19 HELIX 16 AB7 ASN B 257 PHE B 277 1 21 SHEET 1 AA1 2 ILE A 62 ALA A 63 0 SHEET 2 AA1 2 ARG A 74 LEU A 75 -1 O ARG A 74 N ALA A 63 SHEET 1 AA2 5 GLN A 100 GLY A 104 0 SHEET 2 AA2 5 SER A 107 ALA A 113 -1 O ILE A 109 N GLY A 102 SHEET 3 AA2 5 GLN A 119 HIS A 125 -1 O LEU A 122 N TYR A 110 SHEET 4 AA2 5 ALA A 185 GLU A 189 -1 O VAL A 186 N LYS A 123 SHEET 5 AA2 5 PRO A 178 ASN A 182 -1 N ASP A 180 O VAL A 187 SHEET 1 AA3 3 GLY A 193 PRO A 195 0 SHEET 2 AA3 3 LEU A 234 ASP A 237 -1 O LEU A 236 N TYR A 194 SHEET 3 AA3 3 ILE A 242 MET A 244 -1 O THR A 243 N ILE A 235 SHEET 1 AA4 2 LEU A 224 ILE A 225 0 SHEET 2 AA4 2 VAL A 251 SER A 252 -1 O VAL A 251 N ILE A 225 SHEET 1 AA5 2 ILE B 62 TRP B 64 0 SHEET 2 AA5 2 TYR B 73 LEU B 75 -1 O ARG B 74 N ALA B 63 SHEET 1 AA6 5 SER B 96 GLY B 104 0 SHEET 2 AA6 5 SER B 107 ALA B 113 -1 O ILE B 111 N GLY B 98 SHEET 3 AA6 5 PHE B 120 HIS B 125 -1 O LEU B 122 N TYR B 110 SHEET 4 AA6 5 ALA B 185 GLU B 189 -1 O VAL B 186 N LYS B 123 SHEET 5 AA6 5 PRO B 178 ASN B 182 -1 N ASP B 180 O VAL B 187 SHEET 1 AA7 3 GLY B 193 PRO B 195 0 SHEET 2 AA7 3 LEU B 234 ASP B 237 -1 O LEU B 236 N TYR B 194 SHEET 3 AA7 3 ILE B 242 MET B 244 -1 O THR B 243 N ILE B 235 SHEET 1 AA8 2 LEU B 224 ILE B 225 0 SHEET 2 AA8 2 VAL B 251 SER B 252 -1 O VAL B 251 N ILE B 225 CISPEP 1 VAL A 52 LEU A 53 0 11.02 CRYST1 58.592 86.405 121.544 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017067 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008227 0.00000