PDB Short entry for 6FQD HEADER SIGNALING PROTEIN 13-FEB-18 6FQD TITLE ESCHERICHIA COLI SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY NGDN1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SRP RECEPTOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: FTSY, B3464, JW3429; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS FTSY, SRP, SRP-RECEPTOR, PROTEIN TRANSLOCATION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.MRUSEK REVDAT 3 17-JAN-24 6FQD 1 LINK REVDAT 2 06-JUN-18 6FQD 1 JRNL REVDAT 1 09-MAY-18 6FQD 0 JRNL AUTH A.KARNIEL,D.MRUSEK,W.STEINCHEN,O.DYM,G.BANGE,E.BIBI JRNL TITL CO-TRANSLATIONAL FOLDING INTERMEDIATE DICTATES MEMBRANE JRNL TITL 2 TARGETING OF THE SIGNAL RECOGNITION PARTICLE RECEPTOR. JRNL REF J. MOL. BIOL. V. 430 1607 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 29704493 JRNL DOI 10.1016/J.JMB.2018.04.017 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12RC0_2798 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.373 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 38414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.339 REMARK 3 FREE R VALUE TEST SET COUNT : 2051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2884 - 5.1766 0.96 2435 137 0.1757 0.2033 REMARK 3 2 5.1766 - 4.1097 0.97 2416 111 0.1547 0.1807 REMARK 3 3 4.1097 - 3.5905 0.98 2449 133 0.1550 0.1728 REMARK 3 4 3.5905 - 3.2623 0.97 2393 106 0.1675 0.2018 REMARK 3 5 3.2623 - 3.0285 0.98 2424 132 0.1821 0.1884 REMARK 3 6 3.0285 - 2.8500 0.99 2449 127 0.1859 0.2172 REMARK 3 7 2.8500 - 2.7073 0.99 2367 190 0.1887 0.2481 REMARK 3 8 2.7073 - 2.5895 0.99 2417 158 0.1917 0.2086 REMARK 3 9 2.5895 - 2.4898 0.97 2378 145 0.1908 0.2437 REMARK 3 10 2.4898 - 2.4039 0.99 2411 153 0.1881 0.2074 REMARK 3 11 2.4039 - 2.3287 1.00 2464 133 0.1961 0.2403 REMARK 3 12 2.3287 - 2.2621 1.00 2445 128 0.1965 0.2532 REMARK 3 13 2.2621 - 2.2026 0.99 2448 153 0.2111 0.2314 REMARK 3 14 2.2026 - 2.1489 1.00 2450 135 0.2157 0.2557 REMARK 3 15 2.1489 - 2.1000 0.98 2417 110 0.2334 0.2851 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.557 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4204 REMARK 3 ANGLE : 0.806 5684 REMARK 3 CHIRALITY : 0.046 675 REMARK 3 PLANARITY : 0.004 727 REMARK 3 DIHEDRAL : 11.173 2528 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 221 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.2800 23.6476 4.1062 REMARK 3 T TENSOR REMARK 3 T11: 0.5195 T22: 0.5058 REMARK 3 T33: 0.5428 T12: -0.2510 REMARK 3 T13: -0.0458 T23: -0.1380 REMARK 3 L TENSOR REMARK 3 L11: 2.0707 L22: 1.2977 REMARK 3 L33: 0.8691 L12: 0.7140 REMARK 3 L13: 0.5292 L23: -0.6960 REMARK 3 S TENSOR REMARK 3 S11: -0.0283 S12: -0.4951 S13: 0.2634 REMARK 3 S21: 0.2984 S22: 0.2561 S23: -0.6122 REMARK 3 S31: -0.4885 S32: 0.3887 S33: 0.1874 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 264 THROUGH 373 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5613 2.3514 -19.5438 REMARK 3 T TENSOR REMARK 3 T11: 0.2891 T22: 0.2750 REMARK 3 T33: 0.2476 T12: 0.0068 REMARK 3 T13: 0.0954 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 1.3295 L22: 1.5403 REMARK 3 L33: 1.5932 L12: -0.0303 REMARK 3 L13: 0.4771 L23: -0.2660 REMARK 3 S TENSOR REMARK 3 S11: 0.0477 S12: 0.2819 S13: 0.0729 REMARK 3 S21: -0.4182 S22: -0.0693 S23: -0.0992 REMARK 3 S31: -0.1415 S32: 0.0834 S33: 0.0124 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 374 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4458 0.3383 -13.2739 REMARK 3 T TENSOR REMARK 3 T11: 0.2027 T22: 0.2832 REMARK 3 T33: 0.2513 T12: -0.0348 REMARK 3 T13: 0.0426 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 1.4736 L22: 2.1361 REMARK 3 L33: 1.7258 L12: -0.1689 REMARK 3 L13: -0.2072 L23: 0.0865 REMARK 3 S TENSOR REMARK 3 S11: 0.1545 S12: 0.1043 S13: -0.0275 REMARK 3 S21: 0.0944 S22: -0.2043 S23: -0.4441 REMARK 3 S31: 0.0201 S32: 0.2451 S33: -0.0587 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 473 THROUGH 494 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0201 17.9334 -13.0584 REMARK 3 T TENSOR REMARK 3 T11: 0.2850 T22: 0.2934 REMARK 3 T33: 0.4797 T12: -0.0422 REMARK 3 T13: 0.0432 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 2.9738 L22: 1.0049 REMARK 3 L33: 2.2297 L12: 0.0247 REMARK 3 L13: 0.6466 L23: 0.2013 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: 0.1364 S13: 0.7424 REMARK 3 S21: -0.1097 S22: -0.1819 S23: -0.3775 REMARK 3 S31: -0.4476 S32: 0.3294 S33: 0.0438 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 221 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.3780 -12.1472 -1.0112 REMARK 3 T TENSOR REMARK 3 T11: 0.3007 T22: 0.5664 REMARK 3 T33: 0.5780 T12: 0.0606 REMARK 3 T13: 0.0884 T23: -0.1067 REMARK 3 L TENSOR REMARK 3 L11: 1.8681 L22: 2.6871 REMARK 3 L33: 0.8651 L12: -2.0402 REMARK 3 L13: -0.4095 L23: 0.7552 REMARK 3 S TENSOR REMARK 3 S11: 0.0665 S12: 0.1888 S13: -0.1406 REMARK 3 S21: -0.5949 S22: 0.1665 S23: -0.2959 REMARK 3 S31: 0.0735 S32: 0.4790 S33: -0.0308 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 238 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5145 -6.1251 5.0878 REMARK 3 T TENSOR REMARK 3 T11: 0.2015 T22: 0.6506 REMARK 3 T33: 0.6828 T12: 0.0391 REMARK 3 T13: -0.0174 T23: -0.0684 REMARK 3 L TENSOR REMARK 3 L11: 4.7677 L22: 4.8975 REMARK 3 L33: 0.4988 L12: -4.7623 REMARK 3 L13: 0.1377 L23: -0.3838 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: -0.0049 S13: -0.0707 REMARK 3 S21: -0.2274 S22: 0.2825 S23: -0.6362 REMARK 3 S31: -0.0027 S32: 0.3185 S33: 0.1694 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 264 THROUGH 454 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2609 9.9829 22.8034 REMARK 3 T TENSOR REMARK 3 T11: 0.2128 T22: 0.2882 REMARK 3 T33: 0.2373 T12: -0.0381 REMARK 3 T13: -0.0876 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.9967 L22: 1.4175 REMARK 3 L33: 1.2600 L12: -0.2607 REMARK 3 L13: -0.4738 L23: 0.5029 REMARK 3 S TENSOR REMARK 3 S11: -0.0757 S12: -0.2233 S13: 0.0522 REMARK 3 S21: 0.1275 S22: 0.0531 S23: -0.0631 REMARK 3 S31: -0.0252 S32: 0.1715 S33: -0.0111 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 455 THROUGH 493 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9302 -2.7066 18.2363 REMARK 3 T TENSOR REMARK 3 T11: 0.2348 T22: 0.4070 REMARK 3 T33: 0.4608 T12: 0.0498 REMARK 3 T13: -0.0254 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 0.7823 L22: 1.4045 REMARK 3 L33: 1.4685 L12: 0.2724 REMARK 3 L13: -0.2399 L23: -0.1277 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: -0.0216 S13: -0.6519 REMARK 3 S21: -0.3262 S22: -0.0549 S23: -0.6435 REMARK 3 S31: 0.4881 S32: 0.5639 S33: -0.0597 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 221 THROUGH 489 OR REMARK 3 RESID 491 THROUGH 493)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 221 THROUGH 256 OR REMARK 3 RESID 263 THROUGH 489 OR RESID 491 REMARK 3 THROUGH 493)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6FQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1200008755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(311) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38419 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.08104 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.42980 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.10.1_2155 REMARK 200 STARTING MODEL: 1FTS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA-CITRATE PH 5.6, 20% REMARK 280 ISOPROPANOL, 20% PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 55.48150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.48150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.31600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 55.48150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.48150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.31600 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 55.48150 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 55.48150 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 55.31600 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 55.48150 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 55.48150 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 55.31600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 213 REMARK 465 GLY A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 SER A 257 REMARK 465 ARG A 258 REMARK 465 LYS A 259 REMARK 465 GLN A 260 REMARK 465 LEU A 261 REMARK 465 ARG A 262 REMARK 465 ARG A 495 REMARK 465 GLU A 496 REMARK 465 ASP A 497 REMARK 465 MET B 213 REMARK 465 GLY B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 465 HIS B 217 REMARK 465 HIS B 218 REMARK 465 HIS B 219 REMARK 465 HIS B 220 REMARK 465 ARG B 258 REMARK 465 LYS B 259 REMARK 465 GLN B 260 REMARK 465 ALA B 494 REMARK 465 ARG B 495 REMARK 465 GLU B 496 REMARK 465 ASP B 497 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 729 O HOH A 749 1.81 REMARK 500 O HOH A 688 O HOH A 726 1.84 REMARK 500 OE1 GLN A 320 O HOH A 601 1.92 REMARK 500 O HOH B 701 O HOH B 730 1.93 REMARK 500 OG SER B 257 O HOH B 601 1.96 REMARK 500 NH2 ARG B 262 O HOH B 602 1.97 REMARK 500 O HOH A 706 O HOH A 733 1.97 REMARK 500 OE1 GLN A 345 O HOH A 602 1.98 REMARK 500 NE ARG B 402 O HOH B 603 1.98 REMARK 500 O VAL B 288 O HOH B 604 1.99 REMARK 500 O HOH A 767 O HOH B 735 2.02 REMARK 500 N ALA A 485 O HOH A 603 2.04 REMARK 500 OE1 GLN A 369 O HOH A 604 2.04 REMARK 500 O HOH B 615 O HOH B 651 2.04 REMARK 500 N ALA B 485 O HOH B 605 2.07 REMARK 500 O HOH A 745 O HOH B 715 2.08 REMARK 500 O LYS A 291 O HOH A 605 2.09 REMARK 500 O HOH B 737 O HOH B 742 2.11 REMARK 500 OE2 GLU B 475 O2' GDP B 502 2.11 REMARK 500 OE1 GLN B 316 O HOH B 606 2.12 REMARK 500 O HOH A 732 O HOH A 746 2.14 REMARK 500 O HOH B 603 O HOH B 740 2.15 REMARK 500 OE1 GLU B 396 O HOH B 607 2.16 REMARK 500 OE2 GLU A 475 O2' GDP A 502 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 738 O HOH B 738 7544 1.99 REMARK 500 O HOH B 698 O HOH B 749 4555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 262 -71.97 -44.33 REMARK 500 ASP B 263 -175.03 -173.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 756 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH B 757 DISTANCE = 6.21 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 501 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 448 O REMARK 620 2 GLY A 450 O 83.2 REMARK 620 3 ALA A 452 O 99.2 87.3 REMARK 620 4 HOH A 650 O 158.9 82.9 96.0 REMARK 620 5 HOH A 736 O 80.1 71.9 159.1 80.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 501 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 448 O REMARK 620 2 GLY B 450 O 80.2 REMARK 620 3 ALA B 452 O 94.4 84.9 REMARK 620 4 HOH B 642 O 159.9 82.5 94.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 502 DBREF 6FQD A 221 497 UNP P10121 FTSY_ECOLI 221 497 DBREF 6FQD B 221 497 UNP P10121 FTSY_ECOLI 221 497 SEQADV 6FQD MET A 213 UNP P10121 INITIATING METHIONINE SEQADV 6FQD GLY A 214 UNP P10121 EXPRESSION TAG SEQADV 6FQD HIS A 215 UNP P10121 EXPRESSION TAG SEQADV 6FQD HIS A 216 UNP P10121 EXPRESSION TAG SEQADV 6FQD HIS A 217 UNP P10121 EXPRESSION TAG SEQADV 6FQD HIS A 218 UNP P10121 EXPRESSION TAG SEQADV 6FQD HIS A 219 UNP P10121 EXPRESSION TAG SEQADV 6FQD HIS A 220 UNP P10121 EXPRESSION TAG SEQADV 6FQD MET B 213 UNP P10121 INITIATING METHIONINE SEQADV 6FQD GLY B 214 UNP P10121 EXPRESSION TAG SEQADV 6FQD HIS B 215 UNP P10121 EXPRESSION TAG SEQADV 6FQD HIS B 216 UNP P10121 EXPRESSION TAG SEQADV 6FQD HIS B 217 UNP P10121 EXPRESSION TAG SEQADV 6FQD HIS B 218 UNP P10121 EXPRESSION TAG SEQADV 6FQD HIS B 219 UNP P10121 EXPRESSION TAG SEQADV 6FQD HIS B 220 UNP P10121 EXPRESSION TAG SEQRES 1 A 285 MET GLY HIS HIS HIS HIS HIS HIS LYS LYS ILE ASP ASP SEQRES 2 A 285 ASP LEU PHE GLU GLU LEU GLU GLU GLN LEU LEU ILE ALA SEQRES 3 A 285 ASP VAL GLY VAL GLU THR THR ARG LYS ILE ILE THR ASN SEQRES 4 A 285 LEU THR GLU GLY ALA SER ARG LYS GLN LEU ARG ASP ALA SEQRES 5 A 285 GLU ALA LEU TYR GLY LEU LEU LYS GLU GLU MET GLY GLU SEQRES 6 A 285 ILE LEU ALA LYS VAL ASP GLU PRO LEU ASN VAL GLU GLY SEQRES 7 A 285 LYS ALA PRO PHE VAL ILE LEU MET VAL GLY VAL ASN GLY SEQRES 8 A 285 VAL GLY LYS THR THR THR ILE GLY LYS LEU ALA ARG GLN SEQRES 9 A 285 PHE GLU GLN GLN GLY LYS SER VAL MET LEU ALA ALA GLY SEQRES 10 A 285 ASP THR PHE ARG ALA ALA ALA VAL GLU GLN LEU GLN VAL SEQRES 11 A 285 TRP GLY GLN ARG ASN ASN ILE PRO VAL ILE ALA GLN HIS SEQRES 12 A 285 THR GLY ALA ASP SER ALA SER VAL ILE PHE ASP ALA ILE SEQRES 13 A 285 GLN ALA ALA LYS ALA ARG ASN ILE ASP VAL LEU ILE ALA SEQRES 14 A 285 ASP THR ALA GLY ARG LEU GLN ASN LYS SER HIS LEU MET SEQRES 15 A 285 GLU GLU LEU LYS LYS ILE VAL ARG VAL MET LYS LYS LEU SEQRES 16 A 285 ASP VAL GLU ALA PRO HIS GLU VAL MET LEU THR ILE ASP SEQRES 17 A 285 ALA SER THR GLY GLN ASN ALA VAL SER GLN ALA LYS LEU SEQRES 18 A 285 PHE HIS GLU ALA VAL GLY LEU THR GLY ILE THR LEU THR SEQRES 19 A 285 LYS LEU ASP GLY THR ALA LYS GLY GLY VAL ILE PHE SER SEQRES 20 A 285 VAL ALA ASP GLN PHE GLY ILE PRO ILE ARG TYR ILE GLY SEQRES 21 A 285 VAL GLY GLU ARG ILE GLU ASP LEU ARG PRO PHE LYS ALA SEQRES 22 A 285 ASP ASP PHE ILE GLU ALA LEU PHE ALA ARG GLU ASP SEQRES 1 B 285 MET GLY HIS HIS HIS HIS HIS HIS LYS LYS ILE ASP ASP SEQRES 2 B 285 ASP LEU PHE GLU GLU LEU GLU GLU GLN LEU LEU ILE ALA SEQRES 3 B 285 ASP VAL GLY VAL GLU THR THR ARG LYS ILE ILE THR ASN SEQRES 4 B 285 LEU THR GLU GLY ALA SER ARG LYS GLN LEU ARG ASP ALA SEQRES 5 B 285 GLU ALA LEU TYR GLY LEU LEU LYS GLU GLU MET GLY GLU SEQRES 6 B 285 ILE LEU ALA LYS VAL ASP GLU PRO LEU ASN VAL GLU GLY SEQRES 7 B 285 LYS ALA PRO PHE VAL ILE LEU MET VAL GLY VAL ASN GLY SEQRES 8 B 285 VAL GLY LYS THR THR THR ILE GLY LYS LEU ALA ARG GLN SEQRES 9 B 285 PHE GLU GLN GLN GLY LYS SER VAL MET LEU ALA ALA GLY SEQRES 10 B 285 ASP THR PHE ARG ALA ALA ALA VAL GLU GLN LEU GLN VAL SEQRES 11 B 285 TRP GLY GLN ARG ASN ASN ILE PRO VAL ILE ALA GLN HIS SEQRES 12 B 285 THR GLY ALA ASP SER ALA SER VAL ILE PHE ASP ALA ILE SEQRES 13 B 285 GLN ALA ALA LYS ALA ARG ASN ILE ASP VAL LEU ILE ALA SEQRES 14 B 285 ASP THR ALA GLY ARG LEU GLN ASN LYS SER HIS LEU MET SEQRES 15 B 285 GLU GLU LEU LYS LYS ILE VAL ARG VAL MET LYS LYS LEU SEQRES 16 B 285 ASP VAL GLU ALA PRO HIS GLU VAL MET LEU THR ILE ASP SEQRES 17 B 285 ALA SER THR GLY GLN ASN ALA VAL SER GLN ALA LYS LEU SEQRES 18 B 285 PHE HIS GLU ALA VAL GLY LEU THR GLY ILE THR LEU THR SEQRES 19 B 285 LYS LEU ASP GLY THR ALA LYS GLY GLY VAL ILE PHE SER SEQRES 20 B 285 VAL ALA ASP GLN PHE GLY ILE PRO ILE ARG TYR ILE GLY SEQRES 21 B 285 VAL GLY GLU ARG ILE GLU ASP LEU ARG PRO PHE LYS ALA SEQRES 22 B 285 ASP ASP PHE ILE GLU ALA LEU PHE ALA ARG GLU ASP HET K A 501 1 HET GDP A 502 40 HET K B 501 1 HET GDP B 502 40 HETNAM K POTASSIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 K 2(K 1+) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 7 HOH *327(H2 O) HELIX 1 AA1 ASP A 224 ALA A 238 1 15 HELIX 2 AA2 GLY A 241 ALA A 256 1 16 HELIX 3 AA3 ALA A 264 LYS A 281 1 18 HELIX 4 AA4 GLY A 305 GLN A 320 1 16 HELIX 5 AA5 ARG A 333 ASN A 347 1 15 HELIX 6 AA6 ASP A 359 ARG A 374 1 16 HELIX 7 AA7 HIS A 392 ASP A 408 1 17 HELIX 8 AA8 SER A 422 GLY A 424 5 3 HELIX 9 AA9 GLN A 425 GLY A 439 1 15 HELIX 10 AB1 GLY A 455 GLY A 465 1 11 HELIX 11 AB2 LYS A 484 ALA A 494 1 11 HELIX 12 AB3 ASP B 224 ALA B 238 1 15 HELIX 13 AB4 GLY B 241 ALA B 256 1 16 HELIX 14 AB5 ASP B 263 LYS B 281 1 19 HELIX 15 AB6 GLY B 305 GLN B 320 1 16 HELIX 16 AB7 ARG B 333 ASN B 347 1 15 HELIX 17 AB8 ASP B 359 ARG B 374 1 16 HELIX 18 AB9 HIS B 392 ASP B 408 1 17 HELIX 19 AC1 SER B 422 GLY B 424 5 3 HELIX 20 AC2 GLN B 425 GLY B 439 1 15 HELIX 21 AC3 GLY B 455 GLY B 465 1 11 HELIX 22 AC4 LYS B 484 PHE B 493 1 10 SHEET 1 AA1 8 VAL A 351 ILE A 352 0 SHEET 2 AA1 8 VAL A 324 ALA A 327 1 N LEU A 326 O ILE A 352 SHEET 3 AA1 8 VAL A 378 ALA A 381 1 O ILE A 380 N MET A 325 SHEET 4 AA1 8 PHE A 294 VAL A 299 1 N ILE A 296 O ALA A 381 SHEET 5 AA1 8 GLU A 414 ASP A 420 1 O GLU A 414 N LEU A 297 SHEET 6 AA1 8 GLY A 442 THR A 446 1 O THR A 444 N LEU A 417 SHEET 7 AA1 8 ILE A 468 GLY A 472 1 O GLY A 472 N LEU A 445 SHEET 8 AA1 8 LEU A 480 PRO A 482 -1 O ARG A 481 N ILE A 471 SHEET 1 AA2 8 VAL B 351 ILE B 352 0 SHEET 2 AA2 8 VAL B 324 ALA B 327 1 N LEU B 326 O ILE B 352 SHEET 3 AA2 8 VAL B 378 ALA B 381 1 O ILE B 380 N MET B 325 SHEET 4 AA2 8 PHE B 294 VAL B 299 1 N ILE B 296 O LEU B 379 SHEET 5 AA2 8 GLU B 414 ASP B 420 1 O GLU B 414 N LEU B 297 SHEET 6 AA2 8 GLY B 442 THR B 446 1 O THR B 444 N LEU B 417 SHEET 7 AA2 8 ILE B 468 GLY B 472 1 O GLY B 472 N LEU B 445 SHEET 8 AA2 8 LEU B 480 PRO B 482 -1 O ARG B 481 N ILE B 471 LINK O LEU A 448 K K A 501 1555 1555 2.60 LINK O GLY A 450 K K A 501 1555 1555 2.62 LINK O ALA A 452 K K A 501 1555 1555 2.67 LINK K K A 501 O HOH A 650 1555 1555 3.05 LINK K K A 501 O HOH A 736 1555 1555 3.05 LINK O LEU B 448 K K B 501 1555 1555 2.74 LINK O GLY B 450 K K B 501 1555 1555 2.60 LINK O ALA B 452 K K B 501 1555 1555 2.73 LINK K K B 501 O HOH B 642 1555 1555 3.15 CISPEP 1 ALA A 292 PRO A 293 0 -3.50 CISPEP 2 ALA A 411 PRO A 412 0 -2.29 CISPEP 3 ALA B 292 PRO B 293 0 -3.79 CISPEP 4 ALA B 411 PRO B 412 0 -2.46 SITE 1 AC1 5 LEU A 448 GLY A 450 ALA A 452 HOH A 650 SITE 2 AC1 5 HOH A 736 SITE 1 AC2 23 GLY A 303 VAL A 304 GLY A 305 LYS A 306 SITE 2 AC2 23 THR A 307 THR A 308 LYS A 312 ARG A 333 SITE 3 AC2 23 LYS A 447 ASP A 449 GLY A 472 VAL A 473 SITE 4 AC2 23 GLY A 474 GLU A 475 HOH A 613 HOH A 614 SITE 5 AC2 23 HOH A 617 HOH A 635 HOH A 636 HOH A 644 SITE 6 AC2 23 HOH A 657 HOH A 673 HOH A 696 SITE 1 AC3 3 LEU B 448 GLY B 450 ALA B 452 SITE 1 AC4 21 GLY B 303 VAL B 304 GLY B 305 LYS B 306 SITE 2 AC4 21 THR B 307 THR B 308 LYS B 312 ARG B 333 SITE 3 AC4 21 LYS B 447 ASP B 449 GLY B 472 VAL B 473 SITE 4 AC4 21 GLY B 474 GLU B 475 HOH B 631 HOH B 632 SITE 5 AC4 21 HOH B 648 HOH B 650 HOH B 667 HOH B 675 SITE 6 AC4 21 HOH B 684 CRYST1 110.963 110.963 110.632 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009012 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009039 0.00000