PDB Short entry for 6GED HEADER CELL ADHESION 26-APR-18 6GED TITLE ADHESIN DOMAIN OF PRGB FROM ENTEROCOCCUS FAECALIS BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRGB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*GP*GP*GP*CP*GP*GP*CP*CP*CP*G)-3'); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(P*CP*GP*GP*GP*CP*CP*GP*CP*CP*C)-3'); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_COMMON: STREPTOCOCCUS FAECALIS; SOURCE 4 ORGANISM_TAXID: 1351; SOURCE 5 GENE: PRGB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS ADHESIN, CELL ADHESION, BIOFILM FORMATION EXPDTA X-RAY DIFFRACTION AUTHOR A.SCHMITT,R.P.A.BERNTSSON REVDAT 4 17-JAN-24 6GED 1 REMARK REVDAT 3 14-AUG-19 6GED 1 REMARK REVDAT 2 03-OCT-18 6GED 1 JRNL REVDAT 1 16-MAY-18 6GED 0 JRNL AUTH A.SCHMITT,K.JIANG,M.I.CAMACHO,V.R.JONNA,A.HOFER, JRNL AUTH 2 F.WESTERLUND,P.J.CHRISTIE,R.P.BERNTSSON JRNL TITL PRGB PROMOTES AGGREGATION, BIOFILM FORMATION, AND JRNL TITL 2 CONJUGATION THROUGH DNA BINDING AND COMPACTION. JRNL REF MOL. MICROBIOL. V. 109 291 2018 JRNL REFN ESSN 1365-2958 JRNL PMID 29723434 JRNL DOI 10.1111/MMI.13980 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 28358 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7450 - 3.8649 1.00 2903 153 0.1783 0.2145 REMARK 3 2 3.8649 - 3.0680 0.96 2669 141 0.1467 0.1943 REMARK 3 3 3.0680 - 2.6802 1.00 2699 142 0.1472 0.1624 REMARK 3 4 2.6802 - 2.4352 1.00 2731 144 0.1540 0.1874 REMARK 3 5 2.4352 - 2.2606 1.00 2681 141 0.1599 0.2108 REMARK 3 6 2.2606 - 2.1274 1.00 2686 141 0.1727 0.2098 REMARK 3 7 2.1274 - 2.0208 1.00 2673 141 0.1924 0.2519 REMARK 3 8 2.0208 - 1.9329 1.00 2670 141 0.2055 0.2695 REMARK 3 9 1.9329 - 1.8584 0.99 2633 138 0.2528 0.2646 REMARK 3 10 1.8584 - 1.7943 0.98 2594 137 0.3290 0.3511 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2753 REMARK 3 ANGLE : 1.152 3792 REMARK 3 CHIRALITY : 0.072 414 REMARK 3 PLANARITY : 0.008 423 REMARK 3 DIHEDRAL : 12.645 1545 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 435 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5039 23.3060 27.1535 REMARK 3 T TENSOR REMARK 3 T11: 0.2205 T22: 0.2098 REMARK 3 T33: 0.2076 T12: -0.0103 REMARK 3 T13: -0.0348 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.7738 L22: 2.3774 REMARK 3 L33: 1.2729 L12: -0.1370 REMARK 3 L13: 0.1374 L23: 0.1932 REMARK 3 S TENSOR REMARK 3 S11: 0.0336 S12: -0.0956 S13: -0.0903 REMARK 3 S21: 0.1644 S22: -0.0459 S23: 0.0020 REMARK 3 S31: 0.0601 S32: -0.0252 S33: -0.0029 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 436 THROUGH 554 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.2209 23.6354 10.9260 REMARK 3 T TENSOR REMARK 3 T11: 0.1765 T22: 0.2071 REMARK 3 T33: 0.1871 T12: 0.0070 REMARK 3 T13: 0.0056 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.1568 L22: 0.3821 REMARK 3 L33: 1.3879 L12: 0.1426 REMARK 3 L13: 0.8480 L23: -0.0591 REMARK 3 S TENSOR REMARK 3 S11: 0.0533 S12: 0.0709 S13: 0.0393 REMARK 3 S21: -0.0798 S22: -0.0689 S23: -0.0758 REMARK 3 S31: -0.0155 S32: -0.0037 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.5969 8.0813 47.3270 REMARK 3 T TENSOR REMARK 3 T11: 0.6356 T22: 0.3542 REMARK 3 T33: 0.5480 T12: -0.1058 REMARK 3 T13: -0.1356 T23: 0.2066 REMARK 3 L TENSOR REMARK 3 L11: 0.2435 L22: 0.4833 REMARK 3 L33: 0.9219 L12: -0.1422 REMARK 3 L13: -0.2718 L23: 0.6564 REMARK 3 S TENSOR REMARK 3 S11: -0.6228 S12: -0.1849 S13: 0.1118 REMARK 3 S21: 0.2791 S22: 0.0130 S23: 0.2446 REMARK 3 S31: 0.0063 S32: -0.1294 S33: -0.8079 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1073 8.4197 48.4979 REMARK 3 T TENSOR REMARK 3 T11: 1.5746 T22: 1.0838 REMARK 3 T33: 0.8408 T12: 0.0851 REMARK 3 T13: 0.2035 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 0.1075 L22: 0.2295 REMARK 3 L33: 0.1445 L12: 0.0514 REMARK 3 L13: 0.0009 L23: 0.1735 REMARK 3 S TENSOR REMARK 3 S11: 0.3211 S12: -0.0492 S13: 0.0425 REMARK 3 S21: 0.3096 S22: 0.1353 S23: 0.2178 REMARK 3 S31: 0.4219 S32: -0.1162 S33: 0.0596 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009802. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28379 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 43.732 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 13.36 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6EVT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12 M ETHYLENE GLYCOL, 0.1 M REMARK 280 BICINE/TRIS PH 8.5, 20% (V/V) GLYCEROL, 10% (W/V) REMARK 280 POLYTHYLENEGLYCOL 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.00850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.54850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.51300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.54850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.00850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.51300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 244 REMARK 465 MET A 245 REMARK 465 GLU A 246 REMARK 465 PRO A 247 REMARK 465 TYR A 248 REMARK 465 GLU A 249 REMARK 465 LYS A 250 REMARK 465 GLU A 251 REMARK 465 VAL A 252 REMARK 465 ALA A 253 REMARK 465 GLU A 254 REMARK 465 TYR A 255 REMARK 465 ASN A 256 REMARK 465 LYS A 257 REMARK 465 HIS A 258 REMARK 465 LYS A 259 REMARK 465 SER A 555 REMARK 465 VAL A 556 REMARK 465 LYS A 557 REMARK 465 PRO A 558 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 6 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 399 -89.97 78.83 REMARK 500 LYS A 450 78.21 -156.15 REMARK 500 TRP A 502 -26.58 -151.71 REMARK 500 ASN A 536 51.68 -108.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 442 O REMARK 620 2 SER A 442 OG 67.2 REMARK 620 3 ASN A 444 OD1 96.3 126.6 REMARK 620 4 GLU A 455 OE1 91.3 147.4 78.1 REMARK 620 5 HOH A 776 O 125.4 68.8 85.1 141.2 REMARK 620 6 HOH A 794 O 113.6 78.7 147.6 88.8 87.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 DBREF 6GED A 246 558 UNP Q04112 Q04112_ENTFL 246 558 DBREF 6GED C 1 10 PDB 6GED 6GED 1 10 DBREF 6GED D 1 10 PDB 6GED 6GED 1 10 SEQADV 6GED SER A 244 UNP Q04112 EXPRESSION TAG SEQADV 6GED MET A 245 UNP Q04112 EXPRESSION TAG SEQRES 1 A 315 SER MET GLU PRO TYR GLU LYS GLU VAL ALA GLU TYR ASN SEQRES 2 A 315 LYS HIS LYS ASN GLU ASN SER TYR VAL ASN GLU ALA ILE SEQRES 3 A 315 SER LYS ASN LEU VAL PHE ASP GLN SER VAL VAL THR LYS SEQRES 4 A 315 ASP THR LYS ILE SER SER ILE LYS GLY GLY LYS PHE ILE SEQRES 5 A 315 LYS ALA THR ASP PHE ASN LYS VAL ASN ALA GLY ASP SER SEQRES 6 A 315 LYS ASP ILE PHE THR LYS LEU ARG LYS ASP MET GLY GLY SEQRES 7 A 315 LYS ALA THR GLY ASN PHE GLN ASN SER PHE VAL LYS GLU SEQRES 8 A 315 ALA ASN LEU GLY SER ASN GLY GLY TYR ALA VAL LEU LEU SEQRES 9 A 315 GLU LYS ASN LYS PRO VAL THR VAL THR TYR THR GLY LEU SEQRES 10 A 315 ASN ALA SER TYR LEU GLY ARG LYS ILE THR LYS ALA GLU SEQRES 11 A 315 PHE VAL TYR GLU LEU GLN SER SER PRO SER GLN SER GLY SEQRES 12 A 315 THR LEU ASN ALA VAL PHE SER ASN ASP PRO ILE ILE THR SEQRES 13 A 315 ALA PHE ILE GLY THR ASN ARG VAL ASN GLY LYS ASP VAL SEQRES 14 A 315 LYS THR ARG LEU THR ILE LYS PHE PHE ASP ALA SER GLY SEQRES 15 A 315 LYS GLU VAL LEU PRO ASP LYS ASP SER PRO PHE ALA TYR SEQRES 16 A 315 ALA LEU SER SER LEU ASN SER SER LEU THR ASN LYS GLY SEQRES 17 A 315 GLY HIS ALA GLU PHE VAL SER ASP PHE GLY ALA ASN ASN SEQRES 18 A 315 ALA PHE LYS TYR ILE ASN GLY SER TYR VAL LYS LYS GLN SEQRES 19 A 315 ALA ASP GLY LYS PHE TYR SER PRO GLU ASP ILE ASP TYR SEQRES 20 A 315 GLY THR GLY PRO SER GLY LEU LYS ASN SER ASP TRP ASP SEQRES 21 A 315 ALA VAL GLY HIS LYS ASN ALA TYR PHE GLY SER GLY VAL SEQRES 22 A 315 GLY LEU ALA ASN GLY ARG ILE SER PHE SER PHE GLY MET SEQRES 23 A 315 THR THR LYS GLY LYS SER ASN VAL PRO VAL SER SER ALA SEQRES 24 A 315 GLN TRP PHE ALA PHE SER THR ASN LEU ASN ALA GLN SER SEQRES 25 A 315 VAL LYS PRO SEQRES 1 C 10 DG DG DG DC DG DG DC DC DC DG SEQRES 1 D 10 DC DG DG DG DC DC DG DC DC DC HET NA A 601 1 HET EDO A 602 4 HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 NA NA 1+ FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *162(H2 O) HELIX 1 AA1 ASP A 276 SER A 278 5 3 HELIX 2 AA2 LYS A 296 ASN A 301 1 6 HELIX 3 AA3 ASP A 310 ARG A 316 1 7 HELIX 4 AA4 PHE A 327 ASN A 329 5 3 HELIX 5 AA5 GLU A 334 GLY A 338 5 5 HELIX 6 AA6 LYS A 498 TRP A 502 5 5 HELIX 7 AA7 ASN A 509 SER A 514 5 6 SHEET 1 AA1 5 LEU A 273 VAL A 274 0 SHEET 2 AA1 5 VAL A 353 TYR A 364 -1 O SER A 363 N VAL A 274 SHEET 3 AA1 5 ARG A 367 SER A 380 -1 O ALA A 372 N TYR A 357 SHEET 4 AA1 5 VAL A 412 ASP A 422 -1 O THR A 417 N VAL A 375 SHEET 5 AA1 5 GLU A 427 VAL A 428 -1 O VAL A 428 N PHE A 420 SHEET 1 AA2 6 VAL A 280 LYS A 290 0 SHEET 2 AA2 6 VAL A 353 TYR A 364 -1 O THR A 354 N LYS A 290 SHEET 3 AA2 6 ARG A 367 SER A 380 -1 O ALA A 372 N TYR A 357 SHEET 4 AA2 6 VAL A 412 ASP A 422 -1 O THR A 417 N VAL A 375 SHEET 5 AA2 6 ILE A 523 THR A 530 -1 O PHE A 525 N LEU A 416 SHEET 6 AA2 6 ALA A 454 SER A 458 -1 N SER A 458 O SER A 526 SHEET 1 AA3 3 LYS A 293 PHE A 294 0 SHEET 2 AA3 3 GLY A 342 LEU A 347 -1 O LEU A 346 N LYS A 293 SHEET 3 AA3 3 PHE A 331 VAL A 332 -1 N VAL A 332 O GLY A 342 SHEET 1 AA4 5 LYS A 293 PHE A 294 0 SHEET 2 AA4 5 GLY A 342 LEU A 347 -1 O LEU A 346 N LYS A 293 SHEET 3 AA4 5 LEU A 388 SER A 393 -1 O LEU A 388 N LEU A 347 SHEET 4 AA4 5 ALA A 400 GLY A 403 -1 O GLY A 403 N ASN A 389 SHEET 5 AA4 5 ALA A 542 PHE A 545 -1 O PHE A 545 N ALA A 400 SHEET 1 AA5 3 PHE A 436 LEU A 440 0 SHEET 2 AA5 3 GLY A 515 ALA A 519 -1 O GLY A 517 N TYR A 438 SHEET 3 AA5 3 ASN A 464 LYS A 467 -1 N LYS A 467 O VAL A 516 SHEET 1 AA6 2 LYS A 475 LYS A 476 0 SHEET 2 AA6 2 PHE A 482 TYR A 483 -1 O TYR A 483 N LYS A 475 LINK O SER A 442 NA NA A 601 1555 1555 2.29 LINK OG SER A 442 NA NA A 601 1555 1555 2.88 LINK OD1 ASN A 444 NA NA A 601 1555 1555 2.51 LINK OE1 GLU A 455 NA NA A 601 1555 1555 2.59 LINK NA NA A 601 O HOH A 776 1555 1555 2.58 LINK NA NA A 601 O HOH A 794 1555 1555 2.25 SITE 1 AC1 5 SER A 442 ASN A 444 GLU A 455 HOH A 776 SITE 2 AC1 5 HOH A 794 SITE 1 AC2 1 ASP A 489 CRYST1 32.017 93.026 99.097 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031233 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010750 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010091 0.00000