PDB Short entry for 6GFK HEADER TRANSFERASE 30-APR-18 6GFK TITLE DELTA-N METTL16 MTASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: U6 SMALL NUCLEAR RNA (ADENINE-(43)-N(6))-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: METHYLTRANSFERASE 10 DOMAIN-CONTAINING PROTEIN, COMPND 5 METHYLTRANSFERASE-LIKE PROTEIN 16,N6-ADENOSINE-METHYLTRANSFERASE COMPND 6 METTL16; COMPND 7 EC: 2.1.1.346,2.1.1.62; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METTL16, METT10D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM-11-SUMO KEYWDS SAM METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.CHEN,M.MENDEL,D.HOMOLKA,A.A.MCCARTHY,R.S.PILLAI REVDAT 2 03-OCT-18 6GFK 1 JRNL REVDAT 1 19-SEP-18 6GFK 0 JRNL AUTH M.MENDEL,K.M.CHEN,D.HOMOLKA,P.GOS,R.R.PANDEY,A.A.MCCARTHY, JRNL AUTH 2 R.S.PILLAI JRNL TITL METHYLATION OF STRUCTURED RNA BY THE M6A WRITER METTL16 IS JRNL TITL 2 ESSENTIAL FOR MOUSE EMBRYONIC DEVELOPMENT. JRNL REF MOL. CELL V. 71 986 2018 JRNL REFN ISSN 1097-4164 JRNL PMID 30197299 JRNL DOI 10.1016/J.MOLCEL.2018.08.004 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 36037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1820 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.37 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.53 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2918 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2186 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2765 REMARK 3 BIN R VALUE (WORKING SET) : 0.2177 REMARK 3 BIN FREE R VALUE : 0.2351 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.24 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 153 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5281 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 103 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.30150 REMARK 3 B22 (A**2) : -4.30150 REMARK 3 B33 (A**2) : 8.60300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.320 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.274 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.201 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.281 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.205 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5528 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7500 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1908 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 944 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5528 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 725 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6202 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.18 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.25 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -25.9952 40.9468 -8.5379 REMARK 3 T TENSOR REMARK 3 T11: -0.0836 T22: 0.0349 REMARK 3 T33: -0.1551 T12: -0.0567 REMARK 3 T13: -0.0114 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.8379 L22: 1.5225 REMARK 3 L33: 2.4425 L12: 0.1394 REMARK 3 L13: -0.5663 L23: 0.3656 REMARK 3 S TENSOR REMARK 3 S11: 0.1272 S12: -0.1420 S13: -0.0008 REMARK 3 S21: 0.2641 S22: -0.0263 S23: 0.1593 REMARK 3 S31: 0.0952 S32: -0.0146 S33: -0.1009 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 17.5404 38.6714 -14.6000 REMARK 3 T TENSOR REMARK 3 T11: -0.0859 T22: -0.0881 REMARK 3 T33: -0.1618 T12: -0.0602 REMARK 3 T13: -0.0440 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 4.9535 L22: 1.3479 REMARK 3 L33: 1.6157 L12: -0.0851 REMARK 3 L13: -0.6623 L23: -0.1401 REMARK 3 S TENSOR REMARK 3 S11: -0.1595 S12: 0.0457 S13: -0.2406 REMARK 3 S21: -0.2736 S22: 0.0506 S23: 0.0144 REMARK 3 S31: 0.1838 S32: -0.2138 S33: 0.1089 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -16.2212 69.0567 -9.5795 REMARK 3 T TENSOR REMARK 3 T11: -0.1724 T22: -0.0752 REMARK 3 T33: -0.1235 T12: -0.0391 REMARK 3 T13: -0.0406 T23: 0.1587 REMARK 3 L TENSOR REMARK 3 L11: 4.4500 L22: 2.5836 REMARK 3 L33: 1.6953 L12: -1.8348 REMARK 3 L13: -0.1406 L23: 0.1729 REMARK 3 S TENSOR REMARK 3 S11: -0.2099 S12: 0.0570 S13: 0.1647 REMARK 3 S21: 0.0524 S22: -0.0864 S23: -0.4768 REMARK 3 S31: -0.0808 S32: 0.2556 S33: 0.2962 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6GFK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-18. REMARK 100 THE DEPOSITION ID IS D_1200009871. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : BE CRL AND ELLIPTICAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36074 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 46.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.72100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2H00 REMARK 200 REMARK 200 REMARK: NICE BLOCKS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7M AMMONIUM SULFATE, 0.2M K/NA REMARK 280 TARTRATE, 0.1M NA CITRATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.23367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.46733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.46733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.23367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -231.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -52.46733 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -66.88400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 115.84649 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -26.23367 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 -66.88400 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 115.84649 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -26.23367 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 192 REMARK 465 GLU A 193 REMARK 465 ALA A 194 REMARK 465 LYS A 195 REMARK 465 GLY A 196 REMARK 465 VAL A 197 REMARK 465 ASN A 198 REMARK 465 SER A 199 REMARK 465 ARG A 200 REMARK 465 ASN A 201 REMARK 465 PRO A 202 REMARK 465 ARG A 203 REMARK 465 ARG A 204 REMARK 465 PRO A 205 REMARK 465 PRO A 206 REMARK 465 PRO A 207 REMARK 465 SER A 208 REMARK 465 SER A 209 REMARK 465 VAL A 210 REMARK 465 ASN A 211 REMARK 465 THR A 212 REMARK 465 ARG B 41 REMARK 465 VAL B 42 REMARK 465 GLN B 96 REMARK 465 ASP B 97 REMARK 465 SER B 98 REMARK 465 ASP B 99 REMARK 465 LYS B 100 REMARK 465 GLU B 173 REMARK 465 SER B 174 REMARK 465 GLN B 191 REMARK 465 LEU B 192 REMARK 465 GLU B 193 REMARK 465 ALA B 194 REMARK 465 LYS B 195 REMARK 465 GLY B 196 REMARK 465 VAL B 197 REMARK 465 ASN B 198 REMARK 465 SER B 199 REMARK 465 ARG B 200 REMARK 465 ASN B 201 REMARK 465 PRO B 202 REMARK 465 ARG B 203 REMARK 465 ARG B 204 REMARK 465 PRO B 205 REMARK 465 PRO B 206 REMARK 465 PRO B 207 REMARK 465 SER B 208 REMARK 465 SER B 209 REMARK 465 VAL B 210 REMARK 465 ASN B 211 REMARK 465 THR B 212 REMARK 465 ARG C 41 REMARK 465 VAL C 42 REMARK 465 ASP C 99 REMARK 465 LYS C 100 REMARK 465 SER C 101 REMARK 465 GLU C 172 REMARK 465 GLU C 173 REMARK 465 SER C 174 REMARK 465 GLU C 175 REMARK 465 GLU C 193 REMARK 465 ALA C 194 REMARK 465 LYS C 195 REMARK 465 GLY C 196 REMARK 465 VAL C 197 REMARK 465 ASN C 198 REMARK 465 SER C 199 REMARK 465 ARG C 200 REMARK 465 ASN C 201 REMARK 465 PRO C 202 REMARK 465 ARG C 203 REMARK 465 ARG C 204 REMARK 465 PRO C 205 REMARK 465 PRO C 206 REMARK 465 PRO C 207 REMARK 465 SER C 208 REMARK 465 SER C 209 REMARK 465 VAL C 210 REMARK 465 ASN C 211 REMARK 465 THR C 212 REMARK 465 GLY C 213 REMARK 465 GLY C 214 REMARK 465 ILE C 215 REMARK 465 ASP C 291 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 41 CG CD NE CZ NH1 NH2 REMARK 470 SER A 98 OG REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 GLN A 191 CG CD OE1 NE2 REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 LEU B 81 CD1 CD2 REMARK 470 SER B 101 OG REMARK 470 GLN B 148 CG CD OE1 NE2 REMARK 470 GLN B 162 CG CD OE1 NE2 REMARK 470 LYS B 163 CG CD CE NZ REMARK 470 ASP B 168 CG OD1 OD2 REMARK 470 LYS B 171 CG CD CE NZ REMARK 470 GLU B 175 CG CD OE1 OE2 REMARK 470 ILE B 176 CG1 CG2 CD1 REMARK 470 ASN B 190 CG OD1 ND2 REMARK 470 ILE B 215 CG1 CG2 CD1 REMARK 470 GLU B 221 CG CD OE1 OE2 REMARK 470 LYS B 269 CD CE NZ REMARK 470 ASP B 291 CG OD1 OD2 REMARK 470 SER C 98 OG REMARK 470 THR C 102 OG1 CG2 REMARK 470 GLN C 162 CG CD OE1 NE2 REMARK 470 LYS C 163 CG CD CE NZ REMARK 470 LYS C 171 CG CD CE NZ REMARK 470 ASN C 190 CG OD1 ND2 REMARK 470 THR C 216 OG1 CG2 REMARK 470 GLN C 237 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 165 -101.63 -142.51 REMARK 500 ASN A 190 -45.98 68.27 REMARK 500 LYS A 239 -109.09 55.34 REMARK 500 LEU B 165 -102.72 -141.00 REMARK 500 THR B 216 60.05 -109.11 REMARK 500 LYS B 239 -108.33 40.29 REMARK 500 LEU C 165 -104.15 -140.33 REMARK 500 ASN C 190 -125.27 -135.04 REMARK 500 GLN C 191 40.28 -76.03 REMARK 500 GLU C 217 54.37 -111.99 REMARK 500 LYS C 239 -109.19 52.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 302 DBREF 6GFK A 41 291 UNP Q86W50 MET16_HUMAN 41 291 DBREF 6GFK B 41 291 UNP Q86W50 MET16_HUMAN 41 291 DBREF 6GFK C 41 291 UNP Q86W50 MET16_HUMAN 41 291 SEQRES 1 A 251 ARG VAL SER LEU ASN PHE LYS ASP PRO GLU ALA VAL ARG SEQRES 2 A 251 ALA LEU THR CYS THR LEU LEU ARG GLU ASP PHE GLY LEU SEQRES 3 A 251 SER ILE ASP ILE PRO LEU GLU ARG LEU ILE PRO THR VAL SEQRES 4 A 251 PRO LEU ARG LEU ASN TYR ILE HIS TRP VAL GLU ASP LEU SEQRES 5 A 251 ILE GLY HIS GLN ASP SER ASP LYS SER THR LEU ARG ARG SEQRES 6 A 251 GLY ILE ASP ILE GLY THR GLY ALA SER CYS ILE TYR PRO SEQRES 7 A 251 LEU LEU GLY ALA THR LEU ASN GLY TRP TYR PHE LEU ALA SEQRES 8 A 251 THR GLU VAL ASP ASP MET CYS PHE ASN TYR ALA LYS LYS SEQRES 9 A 251 ASN VAL GLU GLN ASN ASN LEU SER ASP LEU ILE LYS VAL SEQRES 10 A 251 VAL LYS VAL PRO GLN LYS THR LEU LEU MET ASP ALA LEU SEQRES 11 A 251 LYS GLU GLU SER GLU ILE ILE TYR ASP PHE CYS MET CYS SEQRES 12 A 251 ASN PRO PRO PHE PHE ALA ASN GLN LEU GLU ALA LYS GLY SEQRES 13 A 251 VAL ASN SER ARG ASN PRO ARG ARG PRO PRO PRO SER SER SEQRES 14 A 251 VAL ASN THR GLY GLY ILE THR GLU ILE MET ALA GLU GLY SEQRES 15 A 251 GLY GLU LEU GLU PHE VAL LYS ARG ILE ILE HIS ASP SER SEQRES 16 A 251 LEU GLN LEU LYS LYS ARG LEU ARG TRP TYR SER CYS MET SEQRES 17 A 251 LEU GLY LYS LYS CYS SER LEU ALA PRO LEU LYS GLU GLU SEQRES 18 A 251 LEU ARG ILE GLN GLY VAL PRO LYS VAL THR TYR THR GLU SEQRES 19 A 251 PHE CYS GLN GLY ARG THR MET ARG TRP ALA LEU ALA TRP SEQRES 20 A 251 SER PHE TYR ASP SEQRES 1 B 251 ARG VAL SER LEU ASN PHE LYS ASP PRO GLU ALA VAL ARG SEQRES 2 B 251 ALA LEU THR CYS THR LEU LEU ARG GLU ASP PHE GLY LEU SEQRES 3 B 251 SER ILE ASP ILE PRO LEU GLU ARG LEU ILE PRO THR VAL SEQRES 4 B 251 PRO LEU ARG LEU ASN TYR ILE HIS TRP VAL GLU ASP LEU SEQRES 5 B 251 ILE GLY HIS GLN ASP SER ASP LYS SER THR LEU ARG ARG SEQRES 6 B 251 GLY ILE ASP ILE GLY THR GLY ALA SER CYS ILE TYR PRO SEQRES 7 B 251 LEU LEU GLY ALA THR LEU ASN GLY TRP TYR PHE LEU ALA SEQRES 8 B 251 THR GLU VAL ASP ASP MET CYS PHE ASN TYR ALA LYS LYS SEQRES 9 B 251 ASN VAL GLU GLN ASN ASN LEU SER ASP LEU ILE LYS VAL SEQRES 10 B 251 VAL LYS VAL PRO GLN LYS THR LEU LEU MET ASP ALA LEU SEQRES 11 B 251 LYS GLU GLU SER GLU ILE ILE TYR ASP PHE CYS MET CYS SEQRES 12 B 251 ASN PRO PRO PHE PHE ALA ASN GLN LEU GLU ALA LYS GLY SEQRES 13 B 251 VAL ASN SER ARG ASN PRO ARG ARG PRO PRO PRO SER SER SEQRES 14 B 251 VAL ASN THR GLY GLY ILE THR GLU ILE MET ALA GLU GLY SEQRES 15 B 251 GLY GLU LEU GLU PHE VAL LYS ARG ILE ILE HIS ASP SER SEQRES 16 B 251 LEU GLN LEU LYS LYS ARG LEU ARG TRP TYR SER CYS MET SEQRES 17 B 251 LEU GLY LYS LYS CYS SER LEU ALA PRO LEU LYS GLU GLU SEQRES 18 B 251 LEU ARG ILE GLN GLY VAL PRO LYS VAL THR TYR THR GLU SEQRES 19 B 251 PHE CYS GLN GLY ARG THR MET ARG TRP ALA LEU ALA TRP SEQRES 20 B 251 SER PHE TYR ASP SEQRES 1 C 251 ARG VAL SER LEU ASN PHE LYS ASP PRO GLU ALA VAL ARG SEQRES 2 C 251 ALA LEU THR CYS THR LEU LEU ARG GLU ASP PHE GLY LEU SEQRES 3 C 251 SER ILE ASP ILE PRO LEU GLU ARG LEU ILE PRO THR VAL SEQRES 4 C 251 PRO LEU ARG LEU ASN TYR ILE HIS TRP VAL GLU ASP LEU SEQRES 5 C 251 ILE GLY HIS GLN ASP SER ASP LYS SER THR LEU ARG ARG SEQRES 6 C 251 GLY ILE ASP ILE GLY THR GLY ALA SER CYS ILE TYR PRO SEQRES 7 C 251 LEU LEU GLY ALA THR LEU ASN GLY TRP TYR PHE LEU ALA SEQRES 8 C 251 THR GLU VAL ASP ASP MET CYS PHE ASN TYR ALA LYS LYS SEQRES 9 C 251 ASN VAL GLU GLN ASN ASN LEU SER ASP LEU ILE LYS VAL SEQRES 10 C 251 VAL LYS VAL PRO GLN LYS THR LEU LEU MET ASP ALA LEU SEQRES 11 C 251 LYS GLU GLU SER GLU ILE ILE TYR ASP PHE CYS MET CYS SEQRES 12 C 251 ASN PRO PRO PHE PHE ALA ASN GLN LEU GLU ALA LYS GLY SEQRES 13 C 251 VAL ASN SER ARG ASN PRO ARG ARG PRO PRO PRO SER SER SEQRES 14 C 251 VAL ASN THR GLY GLY ILE THR GLU ILE MET ALA GLU GLY SEQRES 15 C 251 GLY GLU LEU GLU PHE VAL LYS ARG ILE ILE HIS ASP SER SEQRES 16 C 251 LEU GLN LEU LYS LYS ARG LEU ARG TRP TYR SER CYS MET SEQRES 17 C 251 LEU GLY LYS LYS CYS SER LEU ALA PRO LEU LYS GLU GLU SEQRES 18 C 251 LEU ARG ILE GLN GLY VAL PRO LYS VAL THR TYR THR GLU SEQRES 19 C 251 PHE CYS GLN GLY ARG THR MET ARG TRP ALA LEU ALA TRP SEQRES 20 C 251 SER PHE TYR ASP HET SAH A 301 26 HET SO4 A 302 5 HET SO4 A 303 5 HET SAH B 301 26 HET SO4 B 302 5 HET SO4 B 303 5 HET SAH C 301 26 HET SO4 C 302 5 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM SO4 SULFATE ION FORMUL 4 SAH 3(C14 H20 N6 O5 S) FORMUL 5 SO4 5(O4 S 2-) FORMUL 12 HOH *100(H2 O) HELIX 1 AA1 ASP A 48 GLY A 65 1 18 HELIX 2 AA2 THR A 78 GLY A 94 1 17 HELIX 3 AA3 ASP A 97 SER A 101 5 5 HELIX 4 AA4 CYS A 115 GLY A 126 1 12 HELIX 5 AA5 ASP A 135 ASN A 149 1 15 HELIX 6 AA6 ILE A 215 LYS A 239 1 25 HELIX 7 AA7 LYS A 251 CYS A 253 5 3 HELIX 8 AA8 SER A 254 GLN A 265 1 12 HELIX 9 AA9 ASP B 48 PHE B 64 1 17 HELIX 10 AB1 THR B 78 GLY B 94 1 17 HELIX 11 AB2 CYS B 115 GLY B 126 1 12 HELIX 12 AB3 ASP B 135 ASN B 149 1 15 HELIX 13 AB4 GLY B 222 LYS B 239 1 18 HELIX 14 AB5 LYS B 251 CYS B 253 5 3 HELIX 15 AB6 SER B 254 GLN B 265 1 12 HELIX 16 AB7 ASP C 48 GLY C 65 1 18 HELIX 17 AB8 THR C 78 GLY C 94 1 17 HELIX 18 AB9 CYS C 115 GLY C 126 1 12 HELIX 19 AC1 ASP C 135 ASN C 149 1 15 HELIX 20 AC2 GLY C 222 LYS C 239 1 18 HELIX 21 AC3 LYS C 251 CYS C 253 5 3 HELIX 22 AC4 SER C 254 GLN C 265 1 12 SHEET 1 AA1 7 ILE A 155 LYS A 159 0 SHEET 2 AA1 7 TYR A 128 GLU A 133 1 N ALA A 131 O LYS A 156 SHEET 3 AA1 7 ARG A 105 ILE A 109 1 N ASP A 108 O LEU A 130 SHEET 4 AA1 7 TYR A 178 CYS A 183 1 O MET A 182 N ILE A 107 SHEET 5 AA1 7 LEU A 242 LEU A 249 1 O MET A 248 N CYS A 183 SHEET 6 AA1 7 THR A 280 SER A 288 -1 O TRP A 283 N LEU A 249 SHEET 7 AA1 7 LYS A 269 GLN A 277 -1 N THR A 271 O ALA A 286 SHEET 1 AA2 7 ILE B 155 LYS B 159 0 SHEET 2 AA2 7 TYR B 128 GLU B 133 1 N ALA B 131 O VAL B 158 SHEET 3 AA2 7 ARG B 105 ILE B 109 1 N ASP B 108 O THR B 132 SHEET 4 AA2 7 TYR B 178 CYS B 183 1 O MET B 182 N ILE B 107 SHEET 5 AA2 7 LEU B 242 LEU B 249 1 O MET B 248 N CYS B 183 SHEET 6 AA2 7 THR B 280 SER B 288 -1 O TRP B 283 N LEU B 249 SHEET 7 AA2 7 LYS B 269 GLN B 277 -1 N THR B 271 O ALA B 286 SHEET 1 AA3 7 ILE C 155 LYS C 159 0 SHEET 2 AA3 7 TYR C 128 GLU C 133 1 N PHE C 129 O LYS C 156 SHEET 3 AA3 7 ARG C 105 ILE C 109 1 N ASP C 108 O THR C 132 SHEET 4 AA3 7 TYR C 178 CYS C 183 1 O MET C 182 N ILE C 107 SHEET 5 AA3 7 LEU C 242 LEU C 249 1 O MET C 248 N CYS C 183 SHEET 6 AA3 7 THR C 280 SER C 288 -1 O TRP C 283 N LEU C 249 SHEET 7 AA3 7 LYS C 269 GLN C 277 -1 N THR C 271 O ALA C 286 SITE 1 AC1 20 ASN A 45 LEU A 75 ARG A 82 GLY A 110 SITE 2 AC1 20 THR A 111 TYR A 117 THR A 132 GLU A 133 SITE 3 AC1 20 VAL A 134 ASP A 135 CYS A 138 THR A 164 SITE 4 AC1 20 LEU A 165 ASN A 184 PRO A 186 HOH A 406 SITE 5 AC1 20 HOH A 408 HOH A 412 HOH A 422 HOH A 426 SITE 1 AC2 5 LYS A 47 ARG A 82 ASN A 184 ARG A 282 SITE 2 AC2 5 HOH A 405 SITE 1 AC3 1 ARG A 53 SITE 1 AC4 20 LEU B 75 ARG B 82 GLY B 110 THR B 111 SITE 2 AC4 20 THR B 132 GLU B 133 VAL B 134 ASP B 135 SITE 3 AC4 20 THR B 164 LEU B 165 ASN B 184 PRO B 186 SITE 4 AC4 20 PHE B 188 HOH B 401 HOH B 408 HOH B 412 SITE 5 AC4 20 HOH B 415 HOH B 417 ASN C 45 HOH C 415 SITE 1 AC5 6 LEU B 75 ARG B 82 ASN B 184 ARG B 282 SITE 2 AC5 6 LYS C 47 ARG C 279 SITE 1 AC6 1 ARG B 53 SITE 1 AC7 19 ASN B 45 HOH B 410 LEU C 75 ARG C 82 SITE 2 AC7 19 GLY C 110 THR C 111 THR C 132 GLU C 133 SITE 3 AC7 19 VAL C 134 ASP C 135 CYS C 138 THR C 164 SITE 4 AC7 19 ASN C 184 PRO C 186 PHE C 188 HOH C 403 SITE 5 AC7 19 HOH C 407 HOH C 409 HOH C 410 SITE 1 AC8 6 LYS B 47 ARG B 279 LEU C 75 ARG C 82 SITE 2 AC8 6 ASN C 184 ARG C 282 CRYST1 133.768 133.768 78.701 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007476 0.004316 0.000000 0.00000 SCALE2 0.000000 0.008632 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012706 0.00000