PDB Short entry for 6H2V HEADER TRANSFERASE 16-JUL-18 6H2V TITLE CRYSTAL STRUCTURE OF HUMAN METTL5-TRMT112 COMPLEX, THE 18S RRNA TITLE 2 M6A1832 METHYLTRANSFERASE AT 2.5A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLTRANSFERASE-LIKE PROTEIN 5; COMPND 3 CHAIN: A, C; COMPND 4 EC: 2.1.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MULTIFUNCTIONAL METHYLTRANSFERASE SUBUNIT TRM112-LIKE COMPND 8 PROTEIN; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: TRNA METHYLTRANSFERASE 112 HOMOLOG; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: METTL5, DC3, HSPC133; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TRMT112, AD-001, HSPC152, HSPC170; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RRNA MATURATION, METHYLTRANSFERASE, TRANSLATION, RIBOSOME SYNTHESIS, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.VAN TRAN,M.GRAILLE REVDAT 3 17-JAN-24 6H2V 1 REMARK REVDAT 2 18-SEP-19 6H2V 1 JRNL REVDAT 1 31-JUL-19 6H2V 0 JRNL AUTH N.VAN TRAN,F.G.M.ERNST,B.R.HAWLEY,C.ZORBAS,N.ULRYCK, JRNL AUTH 2 P.HACKERT,K.E.BOHNSACK,M.T.BOHNSACK,S.R.JAFFREY,M.GRAILLE, JRNL AUTH 3 D.L.J.LAFONTAINE JRNL TITL THE HUMAN 18S RRNA M6A METHYLTRANSFERASE METTL5 IS JRNL TITL 2 STABILIZED BY TRMT112. JRNL REF NUCLEIC ACIDS RES. V. 47 7719 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31328227 JRNL DOI 10.1093/NAR/GKZ619 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 36058 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1803 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.56 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.29 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2663 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2720 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2530 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 133 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5031 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.93180 REMARK 3 B22 (A**2) : -24.89290 REMARK 3 B33 (A**2) : 15.96110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.370 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.306 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.232 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.309 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.235 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5273 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7116 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1879 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 135 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 764 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5273 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 683 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5751 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.22 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.15 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.08 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 0.0253 3.0018 34.6388 REMARK 3 T TENSOR REMARK 3 T11: -0.1387 T22: -0.1159 REMARK 3 T33: -0.1781 T12: 0.0029 REMARK 3 T13: -0.0113 T23: -0.0842 REMARK 3 L TENSOR REMARK 3 L11: 2.1534 L22: 1.4604 REMARK 3 L33: 4.0087 L12: 0.0616 REMARK 3 L13: 1.4318 L23: 1.4930 REMARK 3 S TENSOR REMARK 3 S11: -0.2151 S12: -0.2611 S13: 0.3983 REMARK 3 S21: -0.1385 S22: -0.0022 S23: 0.0641 REMARK 3 S31: -0.6358 S32: -0.1660 S33: 0.2173 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -1.9045 -15.5542 17.6510 REMARK 3 T TENSOR REMARK 3 T11: -0.1474 T22: -0.0653 REMARK 3 T33: -0.1144 T12: 0.0111 REMARK 3 T13: 0.0279 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 2.4127 L22: 2.9396 REMARK 3 L33: 4.0780 L12: -0.0409 REMARK 3 L13: 1.4474 L23: -0.7266 REMARK 3 S TENSOR REMARK 3 S11: 0.0830 S12: 0.1350 S13: 0.0813 REMARK 3 S21: -0.2391 S22: -0.1485 S23: -0.1593 REMARK 3 S31: -0.0415 S32: 0.0358 S33: 0.0655 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 24.3643 1.7981 60.4487 REMARK 3 T TENSOR REMARK 3 T11: -0.0590 T22: -0.2423 REMARK 3 T33: -0.1646 T12: 0.0475 REMARK 3 T13: -0.0786 T23: -0.1280 REMARK 3 L TENSOR REMARK 3 L11: 3.0304 L22: 2.5008 REMARK 3 L33: 3.8465 L12: 0.5549 REMARK 3 L13: 0.6345 L23: 0.6461 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: 0.3427 S13: -0.5112 REMARK 3 S21: 0.0928 S22: 0.1746 S23: -0.2524 REMARK 3 S31: 0.5797 S32: 0.2639 S33: -0.1907 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 22.2189 22.9139 70.9038 REMARK 3 T TENSOR REMARK 3 T11: -0.1960 T22: -0.0789 REMARK 3 T33: -0.0980 T12: 0.0142 REMARK 3 T13: -0.0659 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 3.4335 L22: 3.2013 REMARK 3 L33: 3.4861 L12: -0.3208 REMARK 3 L13: -1.5972 L23: -0.2864 REMARK 3 S TENSOR REMARK 3 S11: 0.0856 S12: -0.1942 S13: 0.2818 REMARK 3 S21: 0.3338 S22: 0.0521 S23: -0.2830 REMARK 3 S31: 0.0038 S32: 0.1427 S33: -0.1377 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6H2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1200010955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97996 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36060 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6H2U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4,000; 0.2 M AMMONIUM SULFATE; REMARK 280 100 MM NA CITRATE PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.19000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.61950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.94700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.61950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.19000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.94700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 VAL B 13 REMARK 465 ARG B 14 REMARK 465 GLY B 15 REMARK 465 VAL B 16 REMARK 465 GLY B 17 REMARK 465 SER B 18 REMARK 465 ARG B 19 REMARK 465 SER B 119 REMARK 465 GLU B 120 REMARK 465 GLU B 121 REMARK 465 GLU B 122 REMARK 465 THR B 123 REMARK 465 GLU B 124 REMARK 465 SER B 125 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 GLY C 130 REMARK 465 THR C 131 REMARK 465 LYS C 132 REMARK 465 ASN C 133 REMARK 465 ASN C 134 REMARK 465 LYS C 135 REMARK 465 SER C 189 REMARK 465 TYR C 190 REMARK 465 LYS C 191 REMARK 465 PHE C 192 REMARK 465 HIS C 193 REMARK 465 LYS C 194 REMARK 465 LYS C 195 REMARK 465 LYS C 196 REMARK 465 SER C 197 REMARK 465 HIS C 212 REMARK 465 HIS C 213 REMARK 465 HIS C 214 REMARK 465 HIS C 215 REMARK 465 VAL D 13 REMARK 465 ARG D 14 REMARK 465 GLY D 15 REMARK 465 VAL D 16 REMARK 465 GLY D 17 REMARK 465 SER D 18 REMARK 465 ARG D 19 REMARK 465 GLY D 20 REMARK 465 GLU D 124 REMARK 465 SER D 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 114 14.80 -65.85 REMARK 500 ASN A 134 -22.05 71.00 REMARK 500 SER B 11 168.79 -47.97 REMARK 500 ASN C 101 36.59 -94.02 REMARK 500 LEU C 111 58.70 -102.23 REMARK 500 ASN C 114 8.69 -63.19 REMARK 500 THR C 151 -60.26 -108.69 REMARK 500 SER D 11 121.19 -32.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG0 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG0 D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 203 DBREF 6H2V A 1 209 UNP Q9NRN9 METL5_HUMAN 1 209 DBREF 6H2V B 1 125 UNP Q9UI30 TR112_HUMAN 1 125 DBREF 6H2V C 1 209 UNP Q9NRN9 METL5_HUMAN 1 209 DBREF 6H2V D 1 125 UNP Q9UI30 TR112_HUMAN 1 125 SEQADV 6H2V HIS A 210 UNP Q9NRN9 EXPRESSION TAG SEQADV 6H2V HIS A 211 UNP Q9NRN9 EXPRESSION TAG SEQADV 6H2V HIS A 212 UNP Q9NRN9 EXPRESSION TAG SEQADV 6H2V HIS A 213 UNP Q9NRN9 EXPRESSION TAG SEQADV 6H2V HIS A 214 UNP Q9NRN9 EXPRESSION TAG SEQADV 6H2V HIS A 215 UNP Q9NRN9 EXPRESSION TAG SEQADV 6H2V HIS C 210 UNP Q9NRN9 EXPRESSION TAG SEQADV 6H2V HIS C 211 UNP Q9NRN9 EXPRESSION TAG SEQADV 6H2V HIS C 212 UNP Q9NRN9 EXPRESSION TAG SEQADV 6H2V HIS C 213 UNP Q9NRN9 EXPRESSION TAG SEQADV 6H2V HIS C 214 UNP Q9NRN9 EXPRESSION TAG SEQADV 6H2V HIS C 215 UNP Q9NRN9 EXPRESSION TAG SEQRES 1 A 215 MET LYS LYS VAL ARG LEU LYS GLU LEU GLU SER ARG LEU SEQRES 2 A 215 GLN GLN VAL ASP GLY PHE GLU LYS PRO LYS LEU LEU LEU SEQRES 3 A 215 GLU GLN TYR PRO THR ARG PRO HIS ILE ALA ALA CYS MET SEQRES 4 A 215 LEU TYR THR ILE HIS ASN THR TYR ASP ASP ILE GLU ASN SEQRES 5 A 215 LYS VAL VAL ALA ASP LEU GLY CYS GLY CYS GLY VAL LEU SEQRES 6 A 215 SER ILE GLY THR ALA MET LEU GLY ALA GLY LEU CYS VAL SEQRES 7 A 215 GLY PHE ASP ILE ASP GLU ASP ALA LEU GLU ILE PHE ASN SEQRES 8 A 215 ARG ASN ALA GLU GLU PHE GLU LEU THR ASN ILE ASP MET SEQRES 9 A 215 VAL GLN CYS ASP VAL CYS LEU LEU SER ASN ARG MET SER SEQRES 10 A 215 LYS SER PHE ASP THR VAL ILE MET ASN PRO PRO PHE GLY SEQRES 11 A 215 THR LYS ASN ASN LYS GLY THR ASP MET ALA PHE LEU LYS SEQRES 12 A 215 THR ALA LEU GLU MET ALA ARG THR ALA VAL TYR SER LEU SEQRES 13 A 215 HIS LYS SER SER THR ARG GLU HIS VAL GLN LYS LYS ALA SEQRES 14 A 215 ALA GLU TRP LYS ILE LYS ILE ASP ILE ILE ALA GLU LEU SEQRES 15 A 215 ARG TYR ASP LEU PRO ALA SER TYR LYS PHE HIS LYS LYS SEQRES 16 A 215 LYS SER VAL ASP ILE GLU VAL ASP LEU ILE ARG PHE SER SEQRES 17 A 215 PHE HIS HIS HIS HIS HIS HIS SEQRES 1 B 125 MET LYS LEU LEU THR HIS ASN LEU LEU SER SER HIS VAL SEQRES 2 B 125 ARG GLY VAL GLY SER ARG GLY PHE PRO LEU ARG LEU GLN SEQRES 3 B 125 ALA THR GLU VAL ARG ILE CME PRO VAL GLU PHE ASN PRO SEQRES 4 B 125 ASN PHE VAL ALA ARG MET ILE PRO LYS VAL GLU TRP SER SEQRES 5 B 125 ALA PHE LEU GLU ALA ALA ASP ASN LEU ARG LEU ILE GLN SEQRES 6 B 125 VAL PRO LYS GLY PRO VAL GLU GLY TYR GLU GLU ASN GLU SEQRES 7 B 125 GLU PHE LEU ARG THR MET HIS HIS LEU LEU LEU GLU VAL SEQRES 8 B 125 GLU VAL ILE GLU GLY THR LEU GLN CYS PRO GLU SER GLY SEQRES 9 B 125 ARG MET PHE PRO ILE SER ARG GLY ILE PRO ASN MET LEU SEQRES 10 B 125 LEU SER GLU GLU GLU THR GLU SER SEQRES 1 C 215 MET LYS LYS VAL ARG LEU LYS GLU LEU GLU SER ARG LEU SEQRES 2 C 215 GLN GLN VAL ASP GLY PHE GLU LYS PRO LYS LEU LEU LEU SEQRES 3 C 215 GLU GLN TYR PRO THR ARG PRO HIS ILE ALA ALA CYS MET SEQRES 4 C 215 LEU TYR THR ILE HIS ASN THR TYR ASP ASP ILE GLU ASN SEQRES 5 C 215 LYS VAL VAL ALA ASP LEU GLY CYS GLY CYS GLY VAL LEU SEQRES 6 C 215 SER ILE GLY THR ALA MET LEU GLY ALA GLY LEU CYS VAL SEQRES 7 C 215 GLY PHE ASP ILE ASP GLU ASP ALA LEU GLU ILE PHE ASN SEQRES 8 C 215 ARG ASN ALA GLU GLU PHE GLU LEU THR ASN ILE ASP MET SEQRES 9 C 215 VAL GLN CYS ASP VAL CYS LEU LEU SER ASN ARG MET SER SEQRES 10 C 215 LYS SER PHE ASP THR VAL ILE MET ASN PRO PRO PHE GLY SEQRES 11 C 215 THR LYS ASN ASN LYS GLY THR ASP MET ALA PHE LEU LYS SEQRES 12 C 215 THR ALA LEU GLU MET ALA ARG THR ALA VAL TYR SER LEU SEQRES 13 C 215 HIS LYS SER SER THR ARG GLU HIS VAL GLN LYS LYS ALA SEQRES 14 C 215 ALA GLU TRP LYS ILE LYS ILE ASP ILE ILE ALA GLU LEU SEQRES 15 C 215 ARG TYR ASP LEU PRO ALA SER TYR LYS PHE HIS LYS LYS SEQRES 16 C 215 LYS SER VAL ASP ILE GLU VAL ASP LEU ILE ARG PHE SER SEQRES 17 C 215 PHE HIS HIS HIS HIS HIS HIS SEQRES 1 D 125 MET LYS LEU LEU THR HIS ASN LEU LEU SER SER HIS VAL SEQRES 2 D 125 ARG GLY VAL GLY SER ARG GLY PHE PRO LEU ARG LEU GLN SEQRES 3 D 125 ALA THR GLU VAL ARG ILE CME PRO VAL GLU PHE ASN PRO SEQRES 4 D 125 ASN PHE VAL ALA ARG MET ILE PRO LYS VAL GLU TRP SER SEQRES 5 D 125 ALA PHE LEU GLU ALA ALA ASP ASN LEU ARG LEU ILE GLN SEQRES 6 D 125 VAL PRO LYS GLY PRO VAL GLU GLY TYR GLU GLU ASN GLU SEQRES 7 D 125 GLU PHE LEU ARG THR MET HIS HIS LEU LEU LEU GLU VAL SEQRES 8 D 125 GLU VAL ILE GLU GLY THR LEU GLN CYS PRO GLU SER GLY SEQRES 9 D 125 ARG MET PHE PRO ILE SER ARG GLY ILE PRO ASN MET LEU SEQRES 10 D 125 LEU SER GLU GLU GLU THR GLU SER MODRES 6H2V CME B 33 CYS MODIFIED RESIDUE MODRES 6H2V CME D 33 CYS MODIFIED RESIDUE HET CME B 33 10 HET CME D 33 20 HET SAM A 301 27 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET PEG B 201 7 HET EDO B 202 4 HET SO4 B 203 5 HET SAM C 301 27 HET PG0 C 302 8 HET SO4 C 303 5 HET SO4 C 304 5 HET EDO D 201 4 HET PG0 D 202 8 HET SO4 D 203 5 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM SAM S-ADENOSYLMETHIONINE HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM PG0 2-(2-METHOXYETHOXY)ETHANOL HETSYN EDO ETHYLENE GLYCOL HETSYN PG0 PEG 6000 FORMUL 2 CME 2(C5 H11 N O3 S2) FORMUL 5 SAM 2(C15 H22 N6 O5 S) FORMUL 6 SO4 7(O4 S 2-) FORMUL 9 PEG C4 H10 O3 FORMUL 10 EDO 2(C2 H6 O2) FORMUL 13 PG0 2(C5 H12 O3) FORMUL 19 HOH *28(H2 O) HELIX 1 AA1 ARG A 5 GLN A 14 1 10 HELIX 2 AA2 ARG A 32 THR A 46 1 15 HELIX 3 AA3 GLY A 63 LEU A 72 1 10 HELIX 4 AA4 ASP A 83 GLU A 98 1 16 HELIX 5 AA5 ASP A 108 LEU A 112 5 5 HELIX 6 AA6 SER A 113 SER A 117 5 5 HELIX 7 AA7 THR A 137 MET A 148 1 12 HELIX 8 AA8 THR A 161 LYS A 173 1 13 HELIX 9 AA9 LYS B 2 SER B 11 1 10 HELIX 10 AB1 ASN B 38 ILE B 46 1 9 HELIX 11 AB2 GLU B 50 LEU B 61 1 12 HELIX 12 AB3 GLY B 73 GLU B 76 5 4 HELIX 13 AB4 ASN B 77 GLU B 90 1 14 HELIX 14 AB5 ARG C 5 GLN C 14 1 10 HELIX 15 AB6 ARG C 32 THR C 46 1 15 HELIX 16 AB7 GLY C 63 LEU C 72 1 10 HELIX 17 AB8 ASP C 83 GLU C 98 1 16 HELIX 18 AB9 SER C 113 SER C 117 5 5 HELIX 19 AC1 THR C 137 MET C 148 1 12 HELIX 20 AC2 THR C 161 LYS C 173 1 13 HELIX 21 AC3 LYS D 2 SER D 11 1 10 HELIX 22 AC4 ASN D 38 ILE D 46 1 9 HELIX 23 AC5 PRO D 47 VAL D 49 5 3 HELIX 24 AC6 GLU D 50 LEU D 61 1 12 HELIX 25 AC7 GLY D 73 GLU D 76 5 4 HELIX 26 AC8 ASN D 77 GLU D 90 1 14 SHEET 1 AA1 7 ILE A 102 GLN A 106 0 SHEET 2 AA1 7 LEU A 76 ASP A 81 1 N CYS A 77 O ASP A 103 SHEET 3 AA1 7 VAL A 54 LEU A 58 1 N ASP A 57 O VAL A 78 SHEET 4 AA1 7 PHE A 120 MET A 125 1 O ILE A 124 N ALA A 56 SHEET 5 AA1 7 ALA A 149 LYS A 158 1 O TYR A 154 N VAL A 123 SHEET 6 AA1 7 ILE A 200 SER A 208 -1 O PHE A 207 N VAL A 153 SHEET 7 AA1 7 LYS A 175 TYR A 184 -1 N ASP A 177 O ARG A 206 SHEET 1 AA2 2 THR A 131 LYS A 132 0 SHEET 2 AA2 2 LYS A 135 GLY A 136 -1 O LYS A 135 N LYS A 132 SHEET 1 AA3 4 ARG B 24 ILE B 32 0 SHEET 2 AA3 4 VAL B 91 GLN B 99 -1 O ILE B 94 N GLU B 29 SHEET 3 AA3 4 MET B 106 SER B 110 -1 O ILE B 109 N GLY B 96 SHEET 4 AA3 4 ILE B 113 PRO B 114 -1 O ILE B 113 N SER B 110 SHEET 1 AA4 7 ILE C 102 GLN C 106 0 SHEET 2 AA4 7 LEU C 76 ASP C 81 1 N GLY C 79 O ASP C 103 SHEET 3 AA4 7 VAL C 54 LEU C 58 1 N ASP C 57 O PHE C 80 SHEET 4 AA4 7 PHE C 120 MET C 125 1 O ILE C 124 N ALA C 56 SHEET 5 AA4 7 ALA C 149 LYS C 158 1 O THR C 151 N ASP C 121 SHEET 6 AA4 7 ASP C 199 SER C 208 -1 O ASP C 203 N HIS C 157 SHEET 7 AA4 7 LYS C 175 ASP C 185 -1 N ASP C 177 O ARG C 206 SHEET 1 AA5 4 ARG D 24 ILE D 32 0 SHEET 2 AA5 4 VAL D 91 GLN D 99 -1 O ILE D 94 N GLU D 29 SHEET 3 AA5 4 MET D 106 SER D 110 -1 O PHE D 107 N LEU D 98 SHEET 4 AA5 4 ILE D 113 PRO D 114 -1 O ILE D 113 N SER D 110 LINK C ILE B 32 N CME B 33 1555 1555 1.34 LINK C CME B 33 N PRO B 34 1555 1555 1.35 LINK C ILE D 32 N ACME D 33 1555 1555 1.35 LINK C ILE D 32 N BCME D 33 1555 1555 1.34 LINK C ACME D 33 N PRO D 34 1555 1555 1.35 LINK C BCME D 33 N PRO D 34 1555 1555 1.36 SITE 1 AC1 20 PHE A 19 LEU A 26 GLU A 27 GLN A 28 SITE 2 AC1 20 TYR A 29 PRO A 30 THR A 31 GLY A 59 SITE 3 AC1 20 CYS A 60 GLY A 61 CYS A 62 VAL A 64 SITE 4 AC1 20 ASP A 81 ILE A 82 CYS A 107 ASP A 108 SITE 5 AC1 20 VAL A 109 ASN A 126 PRO A 128 HOH A 401 SITE 1 AC2 5 THR A 151 LYS A 175 ARG A 206 SER A 208 SITE 2 AC2 5 HIS A 211 SITE 1 AC3 3 LYS A 175 HIS A 210 HIS A 211 SITE 1 AC4 3 ARG A 32 PRO A 187 ALA A 188 SITE 1 AC5 6 GLU A 84 GLN A 106 PRO B 108 SER B 110 SITE 2 AC5 6 ILE B 113 ASN B 115 SITE 1 AC6 1 GLU B 90 SITE 1 AC7 3 GLU B 36 PHE B 37 ARG B 82 SITE 1 AC8 20 PHE C 19 LEU C 26 GLU C 27 GLN C 28 SITE 2 AC8 20 TYR C 29 PRO C 30 THR C 31 GLY C 59 SITE 3 AC8 20 CYS C 60 GLY C 61 CYS C 62 VAL C 64 SITE 4 AC8 20 ASP C 81 ILE C 82 CYS C 107 ASP C 108 SITE 5 AC8 20 VAL C 109 ASN C 126 PRO C 128 HOH C 401 SITE 1 AC9 5 LYS A 132 ASN A 133 ARG C 32 PRO C 33 SITE 2 AC9 5 HIS C 34 SITE 1 AD1 4 THR C 151 ARG C 206 SER C 208 HIS C 211 SITE 1 AD2 3 LYS C 175 HIS C 210 HIS C 211 SITE 1 AD3 8 ASN C 91 ASP C 103 MET C 104 CME D 33 SITE 2 AD3 8 GLU D 92 ARG D 111 GLY D 112 PG0 D 202 SITE 1 AD4 8 GLU C 95 GLU D 29 ARG D 31 CME D 33 SITE 2 AD4 8 ILE D 94 GLU D 95 ARG D 111 EDO D 201 SITE 1 AD5 3 ARG B 62 PHE D 37 ARG D 82 CRYST1 56.380 105.894 169.239 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017737 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009443 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005909 0.00000