PDB Short entry for 6H3E
HEADER    HORMONE                                 18-JUL-18   6H3E              
TITLE     RECEPTOR-BOUND GHRELIN CONFORMATION                                   
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: APPETITE-REGULATING HORMONE;                               
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: GROWTH HORMONE SECRETAGOGUE,GROWTH HORMONE-RELEASING        
COMPND   5 PEPTIDE,MOTILIN-RELATED PEPTIDE,PROTEIN M46;                         
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   4 ORGANISM_COMMON: HUMAN;                                              
SOURCE   5 ORGANISM_TAXID: 9606                                                 
KEYWDS    NEUROPEPTIDE, ACYL CHAIN, GROWTH HORMONE SECRETAGOGUE RECEPTOR, GPCR, 
KEYWDS   2 LIPOPEPTIDE HORMONE, OBESITY, DIABETES, ADDICTION., HORMONE          
EXPDTA    SOLUTION NMR                                                          
NUMMDL    10                                                                    
AUTHOR    G.FERRE,M.DAMIAN,C.M'KADMI,O.SAUREL,G.CZAPLICKI,P.DEMANGE,J.MARIE,    
AUTHOR   2 J.A.FEHRENTZ,J.L.BANERES,A.MILON                                     
REVDAT   5   14-JUN-23 6H3E    1       REMARK                                   
REVDAT   4   04-SEP-19 6H3E    1       JRNL                                     
REVDAT   3   28-AUG-19 6H3E    1       JRNL                                     
REVDAT   2   21-AUG-19 6H3E    1       JRNL                                     
REVDAT   1   24-JUL-19 6H3E    0                                                
JRNL        AUTH   G.FERRE,M.LOUET,O.SAUREL,B.DELORT,G.CZAPLICKI,C.M'KADMI,     
JRNL        AUTH 2 M.DAMIAN,P.RENAULT,S.CANTEL,L.GAVARA,P.DEMANGE,J.MARIE,      
JRNL        AUTH 3 J.A.FEHRENTZ,N.FLOQUET,A.MILON,J.L.BANERES                   
JRNL        TITL   STRUCTURE AND DYNAMICS OF G PROTEIN-COUPLED RECEPTOR-BOUND   
JRNL        TITL 2 GHRELIN REVEAL THE CRITICAL ROLE OF THE OCTANOYL CHAIN.      
JRNL        REF    PROC.NATL.ACAD.SCI.USA        V. 116 17525 2019              
JRNL        REFN                   ESSN 1091-6490                               
JRNL        PMID   31416915                                                     
JRNL        DOI    10.1073/PNAS.1905105116                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : AMBER 14                                             
REMARK   3   AUTHORS     : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG,        
REMARK   3                 DUKE, LUO, ... AND KOLLMAN                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 6H3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-18.                  
REMARK 100 THE DEPOSITION ID IS D_1200008787.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 280                                
REMARK 210  PH                             : 6.5                                
REMARK 210  IONIC STRENGTH                 : 100 KCL                            
REMARK 210  PRESSURE                       : 1 ATM                              
REMARK 210  SAMPLE CONTENTS                : 1.37 MM [U-15N]-PHE-LEU-VAL        
REMARK 210                                   GHRELIN 1-18, 2.05 UM [U-2H]       
REMARK 210                                   GHRELIN RECEPTOR, 90% H2O/10%      
REMARK 210                                   D2O; 1.37 MM [U-15N]-PHE-LEU-VAL   
REMARK 210                                   GHRELIN 1-18, 2.05 UM [U-2H]       
REMARK 210                                   GHRELIN RECEPTOR, 2.05 UM          
REMARK 210                                   JMV5327, 90% H2O/10% D2O; 1.15     
REMARK 210                                   MM [U-15N]-PHE-LEU-VAL-SER-GLN-    
REMARK 210                                   GLU GHRELIN 1-18, 1.72 UM [U-2H]   
REMARK 210                                   GHRELIN RECEPTOR, 90% H2O/10%      
REMARK 210                                   D2O; 1.15 MM [U-15N]-PHE-LEU-VAL-  
REMARK 210                                   SER-GLN-GLU GHRELIN 1-18, 1.72     
REMARK 210                                   UM [U-2H] GHRELIN RECEPTOR, 1.72   
REMARK 210                                   UM JMV5327, 90% H2O/10% D2O        
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-1H NOESY; 2D 1H-1H TOCSY;    
REMARK 210                                   3D 1H-1H-15N NOESY-HMQC; 2D 1H-    
REMARK 210                                   15N SOFAST-HMQC                    
REMARK 210  SPECTROMETER FIELD STRENGTH    : 700 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE III                         
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : TOPSPIN 3.5, TOPSPIN 3.2, SPARKY   
REMARK 210                                   1.2                                
REMARK 210   METHOD USED                   : MOLECULAR DYNAMICS                 
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 1000                               
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 10                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2                           
REMARK 350 SURFACE AREA OF THE COMPLEX: 2140 ANGSTROM**2                        
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL                          
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500  1 ARG A  15   NE  -  CZ  -  NH2 ANGL. DEV. =   3.3 DEGREES          
REMARK 500  3 ARG A  15   NE  -  CZ  -  NH1 ANGL. DEV. =   3.9 DEGREES          
REMARK 500  4 ARG A  15   NE  -  CZ  -  NH2 ANGL. DEV. =   3.2 DEGREES          
REMARK 500  7 ARG A  11   NE  -  CZ  -  NH2 ANGL. DEV. =   3.5 DEGREES          
REMARK 500 10 ARG A  11   NE  -  CZ  -  NH1 ANGL. DEV. =   3.3 DEGREES          
REMARK 500 10 ARG A  15   NE  -  CZ  -  NH2 ANGL. DEV. =   3.2 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 ASP A   3      140.63   -173.60                                   
REMARK 500  1 LEU A   5      145.24     82.46                                   
REMARK 500  1 SER A   6      145.40   -172.00                                   
REMARK 500  1 HIS A   9      155.81     86.89                                   
REMARK 500  1 LYS A  16       50.46   -148.66                                   
REMARK 500  1 GLU A  17      -44.12    178.99                                   
REMARK 500  2 LEU A   5      149.64     68.80                                   
REMARK 500  2 HIS A   9      154.86     81.06                                   
REMARK 500  2 ARG A  15     -141.19     52.13                                   
REMARK 500  2 GLU A  17      -12.19   -148.64                                   
REMARK 500  3 LEU A   5      162.76     73.13                                   
REMARK 500  3 HIS A   9      177.11     80.36                                   
REMARK 500  3 LYS A  16       18.44   -165.53                                   
REMARK 500  3 GLU A  17      -28.00   -157.49                                   
REMARK 500  4 LEU A   5      162.31     64.66                                   
REMARK 500  4 PRO A   7       20.63    -75.46                                   
REMARK 500  4 HIS A   9      172.86     68.31                                   
REMARK 500  4 VAL A  12      109.30     69.19                                   
REMARK 500  4 ARG A  15       11.38     58.52                                   
REMARK 500  5 LEU A   5      159.09     80.43                                   
REMARK 500  5 PRO A   7       20.56    -79.22                                   
REMARK 500  5 HIS A   9       72.15     66.31                                   
REMARK 500  5 GLN A  10        8.21     81.45                                   
REMARK 500  5 GLN A  13      -21.00   -155.30                                   
REMARK 500  5 LYS A  16     -169.94   -125.37                                   
REMARK 500  6 ASP A   3      149.72   -171.93                                   
REMARK 500  6 LEU A   5      161.56     67.82                                   
REMARK 500  6 SER A   6      136.83    159.90                                   
REMARK 500  6 HIS A   9      143.76     89.07                                   
REMARK 500  6 GLN A  13       24.11   -146.52                                   
REMARK 500  6 GLN A  14      174.35    176.28                                   
REMARK 500  6 ARG A  15      -41.03   -149.83                                   
REMARK 500  6 LYS A  16      113.36   -165.98                                   
REMARK 500  7 LEU A   5      152.99     71.09                                   
REMARK 500  7 SER A   6      117.54   -168.94                                   
REMARK 500  7 PRO A   7       24.56    -78.45                                   
REMARK 500  7 GLU A   8     -160.54   -125.59                                   
REMARK 500  7 HIS A   9      162.15     79.76                                   
REMARK 500  7 VAL A  12      129.42   -171.25                                   
REMARK 500  8 LEU A   5      151.73     77.51                                   
REMARK 500  8 SER A   6       94.90   -175.52                                   
REMARK 500  8 PRO A   7       22.07    -79.94                                   
REMARK 500  8 HIS A   9     -179.93     75.23                                   
REMARK 500  8 GLN A  13       38.54   -154.86                                   
REMARK 500  9 LEU A   5      158.94     61.96                                   
REMARK 500  9 HIS A   9      136.69     95.81                                   
REMARK 500  9 GLN A  10      172.33    171.32                                   
REMARK 500  9 VAL A  12      139.50    170.28                                   
REMARK 500  9 ARG A  15      -23.47     73.09                                   
REMARK 500  9 GLU A  17       -4.02   -157.81                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      55 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue FKZ A 101                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for Ligand NH2 A 19 bound to SER A    
REMARK 800  18                                                                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 34303   RELATED DB: BMRB                                 
REMARK 900 RECEPTOR-BOUND GHRELIN CONFORMATION                                  
DBREF  6H3E A    1    18  UNP    Q9UBU3   GHRL_HUMAN      24     41             
SEQADV 6H3E ASP A    3  UNP  Q9UBU3    SER    26 ENGINEERED MUTATION            
SEQADV 6H3E NH2 A   19  UNP  Q9UBU3              AMIDATION                      
SEQRES   1 A   19  GLY SER ASP PHE LEU SER PRO GLU HIS GLN ARG VAL GLN          
SEQRES   2 A   19  GLN ARG LYS GLU SER NH2                                      
HET    NH2  A  19       3                                                       
HET    FKZ  A 101      27                                                       
HETNAM     NH2 AMINO GROUP                                                      
HETNAM     FKZ OCTAN-1-AMINE                                                    
FORMUL   1  NH2    H2 N                                                         
FORMUL   2  FKZ    C8 H19 N                                                     
LINK         CG  ASP A   3                 N   FKZ A 101     1555   1555  1.37  
LINK         C   SER A  18                 N   NH2 A  19     1555   1555  1.32  
SITE     1 AC1  5 ASP A   3  PHE A   4  SER A   6  GLU A   8                    
SITE     2 AC1  5 HIS A   9                                                     
SITE     1 AC2  1 SER A  18                                                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000