PDB Short entry for 6HRR HEADER MEMBRANE PROTEIN 28-SEP-18 6HRR TITLE STRUCTURE OF THE TRPML2 ELD AT PH 6.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUCOLIPIN-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRANSIENT RECEPTOR POTENTIAL CHANNEL MUCOLIPIN 2,TRPML2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MCOLN2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRPML CHANNEL MUCOLIPIN CATION CHANNEL ENDOLYSOSOMAL SYSTEM, MEMBRANE KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.BADER,K.K.VIET,A.WAGNER,U.A.HELLMICH REVDAT 3 24-JAN-24 6HRR 1 LINK REVDAT 2 14-AUG-19 6HRR 1 JRNL REVDAT 1 19-JUN-19 6HRR 0 JRNL AUTH K.K.VIET,A.WAGNER,K.SCHWICKERT,N.HELLWIG,M.BRENNICH,N.BADER, JRNL AUTH 2 T.SCHIRMEISTER,N.MORGNER,H.SCHINDELIN,U.A.HELLMICH JRNL TITL STRUCTURE OF THE HUMAN TRPML2 ION CHANNEL JRNL TITL 2 EXTRACYTOSOLIC/LUMENAL DOMAIN. JRNL REF STRUCTURE V. 27 1246 2019 JRNL REFN ISSN 0969-2126 JRNL PMID 31178222 JRNL DOI 10.1016/J.STR.2019.04.016 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1560 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2821 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2229 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2669 REMARK 3 BIN R VALUE (WORKING SET) : 0.2214 REMARK 3 BIN FREE R VALUE : 0.2486 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.39 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 152 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2841 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.52280 REMARK 3 B22 (A**2) : 5.52280 REMARK 3 B33 (A**2) : -11.04550 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.240 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.166 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.143 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.263 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.141 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5971 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10713 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1715 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 989 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5971 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 386 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 4 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6327 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.69 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.07 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -15.6690 20.7254 -14.1139 REMARK 3 T TENSOR REMARK 3 T11: -0.1693 T22: -0.1590 REMARK 3 T33: -0.1744 T12: 0.0347 REMARK 3 T13: -0.0032 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 2.6966 L22: 1.6621 REMARK 3 L33: 1.9923 L12: -0.5502 REMARK 3 L13: -0.5068 L23: 0.1975 REMARK 3 S TENSOR REMARK 3 S11: -0.0141 S12: -0.1182 S13: 0.2281 REMARK 3 S21: -0.0019 S22: 0.0450 S23: 0.0751 REMARK 3 S31: -0.0594 S32: -0.0601 S33: -0.0310 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -39.8784 33.8884 -27.2479 REMARK 3 T TENSOR REMARK 3 T11: -0.1906 T22: -0.2173 REMARK 3 T33: -0.0957 T12: 0.0327 REMARK 3 T13: 0.0010 T23: 0.0433 REMARK 3 L TENSOR REMARK 3 L11: 3.0913 L22: 2.2564 REMARK 3 L33: 1.2179 L12: -0.1158 REMARK 3 L13: -0.2396 L23: -0.2969 REMARK 3 S TENSOR REMARK 3 S11: -0.0772 S12: -0.0960 S13: -0.4276 REMARK 3 S21: 0.0323 S22: 0.0143 S23: -0.1833 REMARK 3 S31: 0.1499 S32: 0.0560 S33: 0.0629 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HRR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1200012149. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 26, 2018 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31030 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 27.20 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 28.80 REMARK 200 R MERGE FOR SHELL (I) : 3.55600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 5TJA REMARK 200 REMARK 200 REMARK: CUBE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% JEFFAMINE M-600 0.1 M MES PH 6.5 REMARK 280 50 MM CSCL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 54.73550 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 54.73550 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 74.87200 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 54.73550 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 54.73550 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 74.87200 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 54.73550 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 54.73550 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 74.87200 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 54.73550 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 54.73550 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 74.87200 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 54.73550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.73550 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 74.87200 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 54.73550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 54.73550 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 74.87200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 54.73550 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 54.73550 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 74.87200 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 54.73550 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 54.73550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 74.87200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -109.47100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 109.47100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 109.47100 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -109.47100 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K A 301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 172 REMARK 465 MET A 173 REMARK 465 PHE A 174 REMARK 465 PRO A 175 REMARK 465 SER A 176 REMARK 465 ASN A 177 REMARK 465 GLU A 178 REMARK 465 THR A 179 REMARK 465 LEU A 180 REMARK 465 ASN A 181 REMARK 465 ILE A 182 REMARK 465 ASP A 183 REMARK 465 ILE A 235 REMARK 465 HIS A 236 REMARK 465 SER A 237 REMARK 465 ARG A 238 REMARK 465 GLU A 239 REMARK 465 LEU A 240 REMARK 465 GLY B 171 REMARK 465 THR B 172 REMARK 465 MET B 173 REMARK 465 PHE B 174 REMARK 465 PRO B 175 REMARK 465 SER B 176 REMARK 465 ASN B 177 REMARK 465 GLU B 178 REMARK 465 THR B 179 REMARK 465 LEU B 180 REMARK 465 ASN B 181 REMARK 465 ILE B 182 REMARK 465 ASP B 183 REMARK 465 ASN B 184 REMARK 465 ILE B 235 REMARK 465 HIS B 236 REMARK 465 SER B 237 REMARK 465 ARG B 238 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 115 -128.37 -161.74 REMARK 500 ILE A 144 -57.65 -120.73 REMARK 500 THR A 148 79.29 -109.76 REMARK 500 THR A 148 77.41 -114.95 REMARK 500 ASP B 115 -133.26 50.69 REMARK 500 ILE B 144 -54.10 -122.72 REMARK 500 THR B 148 69.42 -105.22 REMARK 500 THR B 148 69.01 -109.97 REMARK 500 ASP B 276 59.21 74.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 267 O REMARK 620 2 SER A 267 O 0.0 REMARK 620 3 ASP A 268 OD1 71.5 71.5 REMARK 620 4 ASP A 268 OD1 71.5 71.5 0.0 REMARK 620 5 HOH A 488 O 61.8 61.8 113.0 113.0 REMARK 620 6 HOH A 488 O 124.2 124.2 163.5 163.5 75.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 309 DBREF 6HRR A 92 282 UNP Q8IZK6 MCLN2_HUMAN 92 282 DBREF 6HRR B 92 282 UNP Q8IZK6 MCLN2_HUMAN 92 282 SEQRES 1 A 191 ALA PHE LYS GLU ASP ASN THR VAL ALA PHE LYS HIS LEU SEQRES 2 A 191 PHE LEU LYS GLY TYR SER GLY THR ASP GLU ASP ASP TYR SEQRES 3 A 191 SER CYS SER VAL TYR THR GLN GLU ASP ALA TYR GLU SER SEQRES 4 A 191 ILE PHE PHE ALA ILE ASN GLN TYR HIS GLN LEU LYS ASP SEQRES 5 A 191 ILE THR LEU GLY THR LEU GLY TYR GLY GLU ASN GLU ASP SEQRES 6 A 191 ASN ARG ILE GLY LEU LYS VAL CYS LYS GLN HIS TYR LYS SEQRES 7 A 191 LYS GLY THR MET PHE PRO SER ASN GLU THR LEU ASN ILE SEQRES 8 A 191 ASP ASN ASP VAL GLU LEU ASP CYS VAL GLN LEU ASP LEU SEQRES 9 A 191 GLN ASP LEU SER LYS LYS PRO PRO ASP TRP LYS ASN SER SEQRES 10 A 191 SER PHE PHE ARG LEU GLU PHE TYR ARG LEU LEU GLN VAL SEQRES 11 A 191 GLU ILE SER PHE HIS LEU LYS GLY ILE ASP LEU GLN THR SEQRES 12 A 191 ILE HIS SER ARG GLU LEU PRO ASP CYS TYR VAL PHE GLN SEQRES 13 A 191 ASN THR ILE ILE PHE ASP ASN LYS ALA HIS SER GLY LYS SEQRES 14 A 191 ILE LYS ILE TYR PHE ASP SER ASP ALA LYS ILE GLU GLU SEQRES 15 A 191 CYS LYS ASP LEU ASN ILE PHE GLY SER SEQRES 1 B 191 ALA PHE LYS GLU ASP ASN THR VAL ALA PHE LYS HIS LEU SEQRES 2 B 191 PHE LEU LYS GLY TYR SER GLY THR ASP GLU ASP ASP TYR SEQRES 3 B 191 SER CYS SER VAL TYR THR GLN GLU ASP ALA TYR GLU SER SEQRES 4 B 191 ILE PHE PHE ALA ILE ASN GLN TYR HIS GLN LEU LYS ASP SEQRES 5 B 191 ILE THR LEU GLY THR LEU GLY TYR GLY GLU ASN GLU ASP SEQRES 6 B 191 ASN ARG ILE GLY LEU LYS VAL CYS LYS GLN HIS TYR LYS SEQRES 7 B 191 LYS GLY THR MET PHE PRO SER ASN GLU THR LEU ASN ILE SEQRES 8 B 191 ASP ASN ASP VAL GLU LEU ASP CYS VAL GLN LEU ASP LEU SEQRES 9 B 191 GLN ASP LEU SER LYS LYS PRO PRO ASP TRP LYS ASN SER SEQRES 10 B 191 SER PHE PHE ARG LEU GLU PHE TYR ARG LEU LEU GLN VAL SEQRES 11 B 191 GLU ILE SER PHE HIS LEU LYS GLY ILE ASP LEU GLN THR SEQRES 12 B 191 ILE HIS SER ARG GLU LEU PRO ASP CYS TYR VAL PHE GLN SEQRES 13 B 191 ASN THR ILE ILE PHE ASP ASN LYS ALA HIS SER GLY LYS SEQRES 14 B 191 ILE LYS ILE TYR PHE ASP SER ASP ALA LYS ILE GLU GLU SEQRES 15 B 191 CYS LYS ASP LEU ASN ILE PHE GLY SER HET K A 301 1 HET CL A 302 1 HET CL A 303 1 HET GOL A 304 6 HET GOL A 305 6 HET GOL A 306 6 HET GOL A 307 6 HET GOL A 308 6 HET MES A 309 12 HET CL B 301 1 HET GOL B 302 6 HET GOL B 303 6 HET GOL B 304 6 HET GOL B 305 6 HET GOL B 306 6 HET GOL B 307 6 HET MES B 308 12 HET MES B 309 12 HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 K K 1+ FORMUL 4 CL 3(CL 1-) FORMUL 6 GOL 11(C3 H8 O3) FORMUL 11 MES 3(C6 H13 N O4 S) FORMUL 21 HOH *206(H2 O) HELIX 1 AA1 ALA A 92 LEU A 106 1 15 HELIX 2 AA2 THR A 123 GLN A 140 1 18 HELIX 3 AA3 LEU A 141 ILE A 144 5 4 HELIX 4 AA4 ASP A 194 LYS A 200 1 7 HELIX 5 AA5 PRO A 203 ARG A 212 5 10 HELIX 6 AA6 PHE B 93 LEU B 106 1 14 HELIX 7 AA7 THR B 123 GLN B 140 1 18 HELIX 8 AA8 LEU B 141 ILE B 144 5 4 HELIX 9 AA9 LEU B 195 LYS B 200 1 6 HELIX 10 AB1 ASP B 204 ARG B 212 5 9 SHEET 1 AA1 5 CYS A 119 VAL A 121 0 SHEET 2 AA1 5 ILE A 261 GLU A 272 -1 O ILE A 263 N CYS A 119 SHEET 3 AA1 5 ASP A 242 ASP A 253 -1 N GLN A 247 O ASP A 268 SHEET 4 AA1 5 LEU A 218 ASP A 231 -1 N LEU A 227 O PHE A 246 SHEET 5 AA1 5 LEU A 149 GLY A 152 -1 N GLY A 150 O LYS A 228 SHEET 1 AA2 6 CYS A 119 VAL A 121 0 SHEET 2 AA2 6 ILE A 261 GLU A 272 -1 O ILE A 263 N CYS A 119 SHEET 3 AA2 6 ASP A 242 ASP A 253 -1 N GLN A 247 O ASP A 268 SHEET 4 AA2 6 LEU A 218 ASP A 231 -1 N LEU A 227 O PHE A 246 SHEET 5 AA2 6 LEU A 161 TYR A 168 -1 N GLN A 166 O LEU A 219 SHEET 6 AA2 6 VAL A 186 LEU A 193 -1 O GLU A 187 N HIS A 167 SHEET 1 AA3 5 CYS B 119 VAL B 121 0 SHEET 2 AA3 5 ILE B 261 GLU B 272 -1 O ILE B 263 N CYS B 119 SHEET 3 AA3 5 ASP B 242 ASP B 253 -1 N GLN B 247 O ASP B 268 SHEET 4 AA3 5 LEU B 218 ASP B 231 -1 N LEU B 227 O PHE B 246 SHEET 5 AA3 5 LEU B 149 GLY B 152 -1 N GLY B 150 O LYS B 228 SHEET 1 AA4 6 CYS B 119 VAL B 121 0 SHEET 2 AA4 6 ILE B 261 GLU B 272 -1 O ILE B 263 N CYS B 119 SHEET 3 AA4 6 ASP B 242 ASP B 253 -1 N GLN B 247 O ASP B 268 SHEET 4 AA4 6 LEU B 218 ASP B 231 -1 N LEU B 227 O PHE B 246 SHEET 5 AA4 6 GLY B 160 TYR B 168 -1 N CYS B 164 O GLU B 222 SHEET 6 AA4 6 VAL B 186 ASP B 194 -1 O LEU B 193 N LEU B 161 SSBOND 1 CYS A 164 CYS A 190 1555 1555 2.04 SSBOND 2 CYS A 243 CYS A 274 1555 1555 2.03 SSBOND 3 CYS B 164 CYS B 190 1555 1555 2.07 SSBOND 4 CYS B 243 CYS B 274 1555 1555 2.03 LINK O SER A 267 K K A 301 1555 1555 2.91 LINK O SER A 267 K K A 301 1555 8555 2.91 LINK OD1 ASP A 268 K K A 301 1555 1555 2.87 LINK OD1 ASP A 268 K K A 301 1555 8555 2.87 LINK K K A 301 O HOH A 488 1555 1555 3.50 LINK K K A 301 O HOH A 488 1555 8555 3.50 CISPEP 1 LYS A 201 PRO A 202 0 -3.43 CISPEP 2 LYS B 201 PRO B 202 0 -2.37 CISPEP 3 LEU B 240 PRO B 241 0 -8.24 SITE 1 AC1 2 SER A 267 ASP A 268 SITE 1 AC2 3 LYS A 165 HIS A 167 GLU A 214 SITE 1 AC3 6 GLY A 111 THR A 112 ASP A 113 GLU A 114 SITE 2 AC3 6 ASP A 115 HOH A 430 SITE 1 AC4 2 TYR A 128 GOL A 306 SITE 1 AC5 6 PHE A 132 GOL A 305 HOH A 464 HOH A 486 SITE 2 AC5 6 ASP B 115 GOL B 307 SITE 1 AC6 7 LYS A 165 HIS A 167 ASP A 189 SER A 209 SITE 2 AC6 7 ARG A 212 GLU A 214 ARG A 217 SITE 1 AC7 5 THR A 123 ASP A 126 HOH A 425 HOH A 437 SITE 2 AC7 5 HOH A 474 SITE 1 AC8 9 VAL A 191 GLN A 192 ASP A 194 ASP A 197 SITE 2 AC8 9 TRP A 205 HOH A 401 HOH A 438 LEU B 188 SITE 3 AC8 9 HOH B 462 SITE 1 AC9 3 LYS B 165 HIS B 167 GLU B 214 SITE 1 AD1 8 HIS B 103 THR B 123 PHE B 133 GLN B 137 SITE 2 AD1 8 GOL B 304 HOH B 412 HOH B 444 HOH B 461 SITE 1 AD2 3 GLN B 124 GLU B 125 ASP B 143 SITE 1 AD3 3 ASP B 126 GOL B 302 HOH B 478 SITE 1 AD4 2 GLU B 125 TYR B 128 SITE 1 AD5 8 GLY B 108 TYR B 109 SER B 110 GLU B 114 SITE 2 AD5 8 CYS B 119 SER B 120 HOH B 416 HOH B 428 SITE 1 AD6 3 GOL A 306 MES B 308 HOH B 447 SITE 1 AD7 10 LYS A 201 LYS B 102 ASP B 113 ASP B 115 SITE 2 AD7 10 ASP B 116 SER B 118 TYR B 264 PHE B 265 SITE 3 AD7 10 GOL B 307 HOH B 418 SITE 1 AD8 7 CYS A 190 HIS B 167 LYS B 169 LYS B 170 SITE 2 AD8 7 GLU B 187 ASP B 189 ARG B 217 CRYST1 109.471 109.471 149.744 90.00 90.00 90.00 I 4 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009135 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009135 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006678 0.00000