PDB Short entry for 6HVO HEADER REPLICATION 11-OCT-18 6HVO TITLE CRYSTAL STRUCTURE OF HUMAN PCNA IN COMPLEX WITH THREE PEPTIDES OF P12 TITLE 2 SUBUNIT OF HUMAN POLYMERASE DELTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLIFERATING CELL NUCLEAR ANTIGEN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PCNA,CYCLIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA POLYMERASE DELTA SUBUNIT 4; COMPND 8 CHAIN: D, F, E; COMPND 9 SYNONYM: DNA POLYMERASE DELTA SUBUNIT P12; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PCNA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: POLD4, POLDS; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PCNA, POLD4, P12, REPLICATION, POLYMERASE DELTA, CRYSTAL EXPDTA X-RAY DIFFRACTION AUTHOR A.GONZALEZ-MAGANA,M.ROMANO-MORENO,A.L.ROJAS,F.J.BLANCO,A.DE BIASIO REVDAT 3 27-MAR-19 6HVO 1 JRNL REVDAT 2 30-JAN-19 6HVO 1 JRNL REVDAT 1 23-JAN-19 6HVO 0 JRNL AUTH A.GONZALEZ-MAGANA,A.IBANEZ DE OPAKUA,M.ROMANO-MORENO, JRNL AUTH 2 J.MURCIANO-CALLES,N.MERINO,I.LUQUE,A.L.ROJAS,S.ONESTI, JRNL AUTH 3 F.J.BLANCO,A.DE BIASIO JRNL TITL THE P12 SUBUNIT OF HUMAN POLYMERASE DELTA USES AN ATYPICAL JRNL TITL 2 PIP BOX FOR MOLECULAR RECOGNITION OF PROLIFERATING CELL JRNL TITL 3 NUCLEAR ANTIGEN (PCNA). JRNL REF J.BIOL.CHEM. V. 294 3947 2019 JRNL REFN ESSN 1083-351X JRNL PMID 30655288 JRNL DOI 10.1074/JBC.RA118.006391 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 52745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2779 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3833 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6147 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.38000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : -0.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.148 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6381 ; 0.010 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 5947 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8658 ; 1.445 ; 1.731 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13968 ; 0.490 ; 1.701 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 830 ; 6.830 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;39.579 ;20.273 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1016 ;16.474 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;18.448 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 873 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7050 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1070 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6HVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97925 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55602 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 154.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.16600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 0.09600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS TRIS 6.5 , LI2SO4 (0.2M), PEG 3350 REMARK 280 24%, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.98250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.49100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.94400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.49100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.98250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.94400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, F, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 VAL A 188 REMARK 465 ASP A 189 REMARK 465 LYS A 190 REMARK 465 GLU A 256 REMARK 465 ASP A 257 REMARK 465 GLU A 258 REMARK 465 GLU A 259 REMARK 465 GLY A 260 REMARK 465 SER A 261 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 HIS B 0 REMARK 465 VAL B 188 REMARK 465 ASP B 189 REMARK 465 LYS B 190 REMARK 465 GLU B 256 REMARK 465 ASP B 257 REMARK 465 GLU B 258 REMARK 465 GLU B 259 REMARK 465 GLY B 260 REMARK 465 SER B 261 REMARK 465 GLY C -2 REMARK 465 SER C 186 REMARK 465 ASN C 187 REMARK 465 VAL C 188 REMARK 465 ASP C 189 REMARK 465 LYS C 190 REMARK 465 GLU C 191 REMARK 465 ASP C 257 REMARK 465 GLU C 258 REMARK 465 GLU C 259 REMARK 465 GLY C 260 REMARK 465 SER C 261 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 ARG D 3 REMARK 465 ARG D 16 REMARK 465 ARG D 17 REMARK 465 GLU D 18 REMARK 465 GLY D 19 REMARK 465 MET F 1 REMARK 465 GLY F 2 REMARK 465 ARG F 16 REMARK 465 ARG F 17 REMARK 465 GLU F 18 REMARK 465 GLY F 19 REMARK 465 MET E 1 REMARK 465 GLY E 2 REMARK 465 LYS E 15 REMARK 465 ARG E 16 REMARK 465 ARG E 17 REMARK 465 GLU E 18 REMARK 465 GLY E 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 0 75.52 62.33 REMARK 500 ALA A 242 -120.52 38.44 REMARK 500 ASN B 95 55.83 -119.52 REMARK 500 ASN B 200 -51.66 -126.62 REMARK 500 ALA B 242 -120.10 41.16 REMARK 500 ASN C 107 -11.36 82.39 REMARK 500 ASP C 232 -2.20 72.89 REMARK 500 MET C 244 -46.77 -142.65 REMARK 500 VAL D 14 -7.95 -145.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 303 DBREF 6HVO A 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 6HVO B 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 6HVO C 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 6HVO D 1 19 UNP Q9HCU8 DPOD4_HUMAN 1 19 DBREF 6HVO F 1 19 UNP Q9HCU8 DPOD4_HUMAN 1 19 DBREF 6HVO E 1 19 UNP Q9HCU8 DPOD4_HUMAN 1 19 SEQADV 6HVO GLY A -2 UNP P12004 EXPRESSION TAG SEQADV 6HVO PRO A -1 UNP P12004 EXPRESSION TAG SEQADV 6HVO HIS A 0 UNP P12004 EXPRESSION TAG SEQADV 6HVO GLY B -2 UNP P12004 EXPRESSION TAG SEQADV 6HVO PRO B -1 UNP P12004 EXPRESSION TAG SEQADV 6HVO HIS B 0 UNP P12004 EXPRESSION TAG SEQADV 6HVO GLY C -2 UNP P12004 EXPRESSION TAG SEQADV 6HVO PRO C -1 UNP P12004 EXPRESSION TAG SEQADV 6HVO HIS C 0 UNP P12004 EXPRESSION TAG SEQRES 1 A 264 GLY PRO HIS MET PHE GLU ALA ARG LEU VAL GLN GLY SER SEQRES 2 A 264 ILE LEU LYS LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE SEQRES 3 A 264 ASN GLU ALA CYS TRP ASP ILE SER SER SER GLY VAL ASN SEQRES 4 A 264 LEU GLN SER MET ASP SER SER HIS VAL SER LEU VAL GLN SEQRES 5 A 264 LEU THR LEU ARG SER GLU GLY PHE ASP THR TYR ARG CYS SEQRES 6 A 264 ASP ARG ASN LEU ALA MET GLY VAL ASN LEU THR SER MET SEQRES 7 A 264 SER LYS ILE LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE SEQRES 8 A 264 THR LEU ARG ALA GLU ASP ASN ALA ASP THR LEU ALA LEU SEQRES 9 A 264 VAL PHE GLU ALA PRO ASN GLN GLU LYS VAL SER ASP TYR SEQRES 10 A 264 GLU MET LYS LEU MET ASP LEU ASP VAL GLU GLN LEU GLY SEQRES 11 A 264 ILE PRO GLU GLN GLU TYR SER CYS VAL VAL LYS MET PRO SEQRES 12 A 264 SER GLY GLU PHE ALA ARG ILE CYS ARG ASP LEU SER HIS SEQRES 13 A 264 ILE GLY ASP ALA VAL VAL ILE SER CYS ALA LYS ASP GLY SEQRES 14 A 264 VAL LYS PHE SER ALA SER GLY GLU LEU GLY ASN GLY ASN SEQRES 15 A 264 ILE LYS LEU SER GLN THR SER ASN VAL ASP LYS GLU GLU SEQRES 16 A 264 GLU ALA VAL THR ILE GLU MET ASN GLU PRO VAL GLN LEU SEQRES 17 A 264 THR PHE ALA LEU ARG TYR LEU ASN PHE PHE THR LYS ALA SEQRES 18 A 264 THR PRO LEU SER SER THR VAL THR LEU SER MET SER ALA SEQRES 19 A 264 ASP VAL PRO LEU VAL VAL GLU TYR LYS ILE ALA ASP MET SEQRES 20 A 264 GLY HIS LEU LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP SEQRES 21 A 264 GLU GLU GLY SER SEQRES 1 B 264 GLY PRO HIS MET PHE GLU ALA ARG LEU VAL GLN GLY SER SEQRES 2 B 264 ILE LEU LYS LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE SEQRES 3 B 264 ASN GLU ALA CYS TRP ASP ILE SER SER SER GLY VAL ASN SEQRES 4 B 264 LEU GLN SER MET ASP SER SER HIS VAL SER LEU VAL GLN SEQRES 5 B 264 LEU THR LEU ARG SER GLU GLY PHE ASP THR TYR ARG CYS SEQRES 6 B 264 ASP ARG ASN LEU ALA MET GLY VAL ASN LEU THR SER MET SEQRES 7 B 264 SER LYS ILE LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE SEQRES 8 B 264 THR LEU ARG ALA GLU ASP ASN ALA ASP THR LEU ALA LEU SEQRES 9 B 264 VAL PHE GLU ALA PRO ASN GLN GLU LYS VAL SER ASP TYR SEQRES 10 B 264 GLU MET LYS LEU MET ASP LEU ASP VAL GLU GLN LEU GLY SEQRES 11 B 264 ILE PRO GLU GLN GLU TYR SER CYS VAL VAL LYS MET PRO SEQRES 12 B 264 SER GLY GLU PHE ALA ARG ILE CYS ARG ASP LEU SER HIS SEQRES 13 B 264 ILE GLY ASP ALA VAL VAL ILE SER CYS ALA LYS ASP GLY SEQRES 14 B 264 VAL LYS PHE SER ALA SER GLY GLU LEU GLY ASN GLY ASN SEQRES 15 B 264 ILE LYS LEU SER GLN THR SER ASN VAL ASP LYS GLU GLU SEQRES 16 B 264 GLU ALA VAL THR ILE GLU MET ASN GLU PRO VAL GLN LEU SEQRES 17 B 264 THR PHE ALA LEU ARG TYR LEU ASN PHE PHE THR LYS ALA SEQRES 18 B 264 THR PRO LEU SER SER THR VAL THR LEU SER MET SER ALA SEQRES 19 B 264 ASP VAL PRO LEU VAL VAL GLU TYR LYS ILE ALA ASP MET SEQRES 20 B 264 GLY HIS LEU LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP SEQRES 21 B 264 GLU GLU GLY SER SEQRES 1 C 264 GLY PRO HIS MET PHE GLU ALA ARG LEU VAL GLN GLY SER SEQRES 2 C 264 ILE LEU LYS LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE SEQRES 3 C 264 ASN GLU ALA CYS TRP ASP ILE SER SER SER GLY VAL ASN SEQRES 4 C 264 LEU GLN SER MET ASP SER SER HIS VAL SER LEU VAL GLN SEQRES 5 C 264 LEU THR LEU ARG SER GLU GLY PHE ASP THR TYR ARG CYS SEQRES 6 C 264 ASP ARG ASN LEU ALA MET GLY VAL ASN LEU THR SER MET SEQRES 7 C 264 SER LYS ILE LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE SEQRES 8 C 264 THR LEU ARG ALA GLU ASP ASN ALA ASP THR LEU ALA LEU SEQRES 9 C 264 VAL PHE GLU ALA PRO ASN GLN GLU LYS VAL SER ASP TYR SEQRES 10 C 264 GLU MET LYS LEU MET ASP LEU ASP VAL GLU GLN LEU GLY SEQRES 11 C 264 ILE PRO GLU GLN GLU TYR SER CYS VAL VAL LYS MET PRO SEQRES 12 C 264 SER GLY GLU PHE ALA ARG ILE CYS ARG ASP LEU SER HIS SEQRES 13 C 264 ILE GLY ASP ALA VAL VAL ILE SER CYS ALA LYS ASP GLY SEQRES 14 C 264 VAL LYS PHE SER ALA SER GLY GLU LEU GLY ASN GLY ASN SEQRES 15 C 264 ILE LYS LEU SER GLN THR SER ASN VAL ASP LYS GLU GLU SEQRES 16 C 264 GLU ALA VAL THR ILE GLU MET ASN GLU PRO VAL GLN LEU SEQRES 17 C 264 THR PHE ALA LEU ARG TYR LEU ASN PHE PHE THR LYS ALA SEQRES 18 C 264 THR PRO LEU SER SER THR VAL THR LEU SER MET SER ALA SEQRES 19 C 264 ASP VAL PRO LEU VAL VAL GLU TYR LYS ILE ALA ASP MET SEQRES 20 C 264 GLY HIS LEU LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP SEQRES 21 C 264 GLU GLU GLY SER SEQRES 1 D 19 MET GLY ARG LYS ARG LEU ILE THR ASP SER TYR PRO VAL SEQRES 2 D 19 VAL LYS ARG ARG GLU GLY SEQRES 1 F 19 MET GLY ARG LYS ARG LEU ILE THR ASP SER TYR PRO VAL SEQRES 2 F 19 VAL LYS ARG ARG GLU GLY SEQRES 1 E 19 MET GLY ARG LYS ARG LEU ILE THR ASP SER TYR PRO VAL SEQRES 2 E 19 VAL LYS ARG ARG GLU GLY HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 C 301 5 HET SO4 C 302 5 HET SO4 C 303 5 HETNAM SO4 SULFATE ION FORMUL 7 SO4 7(O4 S 2-) FORMUL 14 HOH *243(H2 O) HELIX 1 AA1 GLN A 8 ALA A 18 1 11 HELIX 2 AA2 GLU A 55 PHE A 57 5 3 HELIX 3 AA3 LEU A 72 LYS A 80 1 9 HELIX 4 AA4 SER A 141 HIS A 153 1 13 HELIX 5 AA5 LEU A 209 THR A 216 1 8 HELIX 6 AA6 LYS A 217 SER A 222 5 6 HELIX 7 AA7 GLY B 9 LYS B 20 1 12 HELIX 8 AA8 GLU B 55 PHE B 57 5 3 HELIX 9 AA9 LEU B 72 LYS B 80 1 9 HELIX 10 AB1 SER B 141 SER B 152 1 12 HELIX 11 AB2 LEU B 209 THR B 216 1 8 HELIX 12 AB3 LYS B 217 SER B 222 5 6 HELIX 13 AB4 GLY C 9 ALA C 18 1 10 HELIX 14 AB5 GLU C 55 PHE C 57 5 3 HELIX 15 AB6 LEU C 72 LYS C 80 1 9 HELIX 16 AB7 SER C 141 HIS C 153 1 13 HELIX 17 AB8 LEU C 209 THR C 216 1 8 HELIX 18 AB9 LYS C 217 SER C 222 5 6 HELIX 19 AC1 LEU D 6 SER D 10 5 5 HELIX 20 AC2 LEU F 6 SER F 10 5 5 HELIX 21 AC3 LEU E 6 SER E 10 5 5 SHEET 1 AA1 9 THR A 59 CYS A 62 0 SHEET 2 AA1 9 MET A 1 LEU A 6 -1 N GLU A 3 O ARG A 61 SHEET 3 AA1 9 ILE A 87 GLU A 93 -1 O ALA A 92 N PHE A 2 SHEET 4 AA1 9 THR A 98 GLU A 104 -1 O ALA A 100 N ARG A 91 SHEET 5 AA1 9 LYS A 110 LYS A 117 -1 O SER A 112 N PHE A 103 SHEET 6 AA1 9 GLY B 176 SER B 183 -1 O LYS B 181 N VAL A 111 SHEET 7 AA1 9 GLY B 166 SER B 172 -1 N PHE B 169 O ILE B 180 SHEET 8 AA1 9 ALA B 157 CYS B 162 -1 N SER B 161 O LYS B 168 SHEET 9 AA1 9 VAL B 203 ALA B 208 -1 O LEU B 205 N ILE B 160 SHEET 1 AA2 9 LEU A 66 ASN A 71 0 SHEET 2 AA2 9 GLU A 25 ILE A 30 -1 N TRP A 28 O MET A 68 SHEET 3 AA2 9 GLY A 34 MET A 40 -1 O ASN A 36 N ASP A 29 SHEET 4 AA2 9 SER A 46 ARG A 53 -1 O VAL A 48 N SER A 39 SHEET 5 AA2 9 GLY A 245 LEU A 251 -1 O TYR A 250 N LEU A 47 SHEET 6 AA2 9 LEU A 235 ILE A 241 -1 N VAL A 237 O TYR A 249 SHEET 7 AA2 9 THR A 224 MET A 229 -1 N SER A 228 O VAL A 236 SHEET 8 AA2 9 CYS A 135 PRO A 140 -1 N CYS A 135 O MET A 229 SHEET 9 AA2 9 THR A 196 MET A 199 -1 O GLU A 198 N VAL A 136 SHEET 1 AA3 9 VAL A 203 ALA A 208 0 SHEET 2 AA3 9 ALA A 157 CYS A 162 -1 N ILE A 160 O LEU A 205 SHEET 3 AA3 9 GLY A 166 GLY A 173 -1 O LYS A 168 N SER A 161 SHEET 4 AA3 9 GLY A 176 SER A 183 -1 O LEU A 182 N VAL A 167 SHEET 5 AA3 9 LYS C 110 LYS C 117 -1 O VAL C 111 N LYS A 181 SHEET 6 AA3 9 THR C 98 GLU C 104 -1 N LEU C 99 O MET C 116 SHEET 7 AA3 9 ILE C 87 ALA C 92 -1 N ILE C 87 O GLU C 104 SHEET 8 AA3 9 PHE C 2 LEU C 6 -1 N LEU C 6 O ILE C 88 SHEET 9 AA3 9 THR C 59 CYS C 62 -1 O THR C 59 N ARG C 5 SHEET 1 AA4 9 THR B 59 CYS B 62 0 SHEET 2 AA4 9 PHE B 2 LEU B 6 -1 N GLU B 3 O ARG B 61 SHEET 3 AA4 9 ILE B 87 ALA B 92 -1 O LEU B 90 N ALA B 4 SHEET 4 AA4 9 THR B 98 GLU B 104 -1 O ALA B 100 N ARG B 91 SHEET 5 AA4 9 LYS B 110 LYS B 117 -1 O SER B 112 N PHE B 103 SHEET 6 AA4 9 GLY C 176 SER C 183 -1 O LYS C 181 N VAL B 111 SHEET 7 AA4 9 GLY C 166 GLY C 173 -1 N PHE C 169 O ILE C 180 SHEET 8 AA4 9 ALA C 157 CYS C 162 -1 N SER C 161 O LYS C 168 SHEET 9 AA4 9 VAL C 203 ALA C 208 -1 O LEU C 205 N ILE C 160 SHEET 1 AA5 9 LEU B 66 ASN B 71 0 SHEET 2 AA5 9 GLU B 25 SER B 31 -1 N TRP B 28 O MET B 68 SHEET 3 AA5 9 GLY B 34 MET B 40 -1 O GLY B 34 N SER B 31 SHEET 4 AA5 9 SER B 46 ARG B 53 -1 O LEU B 52 N VAL B 35 SHEET 5 AA5 9 GLY B 245 LEU B 251 -1 O TYR B 250 N LEU B 47 SHEET 6 AA5 9 LEU B 235 ILE B 241 -1 N ILE B 241 O GLY B 245 SHEET 7 AA5 9 THR B 224 MET B 229 -1 N SER B 228 O VAL B 236 SHEET 8 AA5 9 CYS B 135 PRO B 140 -1 N MET B 139 O VAL B 225 SHEET 9 AA5 9 THR B 196 MET B 199 -1 O THR B 196 N LYS B 138 SHEET 1 AA6 2 GLN B 125 LEU B 126 0 SHEET 2 AA6 2 VAL D 13 LYS D 15 -1 O VAL D 14 N GLN B 125 SHEET 1 AA7 9 LEU C 66 ASN C 71 0 SHEET 2 AA7 9 GLU C 25 SER C 31 -1 N TRP C 28 O MET C 68 SHEET 3 AA7 9 GLY C 34 MET C 40 -1 O ASN C 36 N ASP C 29 SHEET 4 AA7 9 SER C 46 ARG C 53 -1 O LEU C 50 N LEU C 37 SHEET 5 AA7 9 GLY C 245 LEU C 251 -1 O TYR C 250 N LEU C 47 SHEET 6 AA7 9 LEU C 235 ILE C 241 -1 N VAL C 237 O TYR C 249 SHEET 7 AA7 9 THR C 224 MET C 229 -1 N THR C 226 O GLU C 238 SHEET 8 AA7 9 CYS C 135 PRO C 140 -1 N MET C 139 O VAL C 225 SHEET 9 AA7 9 THR C 196 MET C 199 -1 O GLU C 198 N VAL C 136 SHEET 1 AA8 2 GLN C 125 LEU C 126 0 SHEET 2 AA8 2 VAL F 13 LYS F 15 -1 O VAL F 14 N GLN C 125 SSBOND 1 CYS A 135 CYS A 162 1555 1555 2.91 SITE 1 AC1 3 ARG A 210 LYS A 254 LYS E 4 SITE 1 AC2 2 HIS A 153 LYS C 77 SITE 1 AC3 4 ARG B 53 LYS B 240 HIS B 246 HOH B 411 SITE 1 AC4 4 ARG B 64 ASN B 65 ARG C 64 ASN C 65 SITE 1 AC5 3 SER C 42 SER C 43 LEU F 6 SITE 1 AC6 4 ALA C 208 ARG C 210 LYS C 254 HOH C 404 SITE 1 AC7 2 ARG C 146 ARG C 149 CRYST1 71.965 83.888 154.982 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013896 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006452 0.00000