PDB Short entry for 6HYM HEADER SIGNALING PROTEIN 22-OCT-18 6HYM TITLE STRUCTURE OF PCM1 LIR MOTIF BOUND TO GABARAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERICENTRIOLAR MATERIAL 1 PROTEIN,GAMMA-AMINOBUTYRIC ACID COMPND 3 RECEPTOR-ASSOCIATED PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: HPCM-1,GABA(A) RECEPTOR-ASSOCIATED PROTEIN,MM46; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PCM1, GABARAP, FLC3B, HT004; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AUTOPHAGY, ATG8, LIR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MOUILLERON,M.WIRTH,W.ZHANG,N.O'REILLY,S.TOOZE,T.JOHANSEN,M.RAZI, AUTHOR 2 L.NYONI,D.JOSHI REVDAT 3 24-JAN-24 6HYM 1 REMARK REVDAT 2 15-MAY-19 6HYM 1 JRNL REVDAT 1 08-MAY-19 6HYM 0 JRNL AUTH M.WIRTH,W.ZHANG,M.RAZI,L.NYONI,D.JOSHI,N.O'REILLY, JRNL AUTH 2 T.JOHANSEN,S.A.TOOZE,S.MOUILLERON JRNL TITL MOLECULAR DETERMINANTS REGULATING SELECTIVE BINDING OF JRNL TITL 2 AUTOPHAGY ADAPTERS AND RECEPTORS TO ATG8 PROTEINS. JRNL REF NAT COMMUN V. 10 2055 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31053714 JRNL DOI 10.1038/S41467-019-10059-6 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 30026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1524 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6002 - 4.1346 1.00 2701 129 0.1506 0.1879 REMARK 3 2 4.1346 - 3.2821 1.00 2602 148 0.1626 0.1790 REMARK 3 3 3.2821 - 2.8673 1.00 2597 149 0.1937 0.2093 REMARK 3 4 2.8673 - 2.6051 1.00 2592 139 0.2090 0.2372 REMARK 3 5 2.6051 - 2.4184 1.00 2638 105 0.2053 0.2760 REMARK 3 6 2.4184 - 2.2759 1.00 2592 113 0.2176 0.2869 REMARK 3 7 2.2759 - 2.1619 1.00 2556 165 0.2247 0.2970 REMARK 3 8 2.1619 - 2.0678 1.00 2619 110 0.2356 0.2674 REMARK 3 9 2.0678 - 1.9882 1.00 2525 159 0.2675 0.2777 REMARK 3 10 1.9882 - 1.9196 0.99 2575 129 0.3169 0.3477 REMARK 3 11 1.9196 - 1.8595 0.98 2505 178 0.3830 0.4018 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2229 REMARK 3 ANGLE : 1.232 3012 REMARK 3 CHIRALITY : 0.089 318 REMARK 3 PLANARITY : 0.008 390 REMARK 3 DIHEDRAL : 10.689 1855 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -12 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3696 93.7818 -1.5338 REMARK 3 T TENSOR REMARK 3 T11: 0.4190 T22: 0.4304 REMARK 3 T33: 0.5128 T12: -0.0343 REMARK 3 T13: -0.0858 T23: 0.1032 REMARK 3 L TENSOR REMARK 3 L11: 0.3439 L22: 0.6210 REMARK 3 L33: 1.1733 L12: 0.7486 REMARK 3 L13: 0.0569 L23: 0.1299 REMARK 3 S TENSOR REMARK 3 S11: -0.2768 S12: -0.2645 S13: 0.0702 REMARK 3 S21: -0.3675 S22: -0.0266 S23: -0.1983 REMARK 3 S31: -0.2585 S32: 0.2132 S33: -0.0692 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0865 95.2171 -8.5600 REMARK 3 T TENSOR REMARK 3 T11: 0.3528 T22: 0.3718 REMARK 3 T33: 0.3986 T12: -0.0010 REMARK 3 T13: -0.0675 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 1.8902 L22: 1.4711 REMARK 3 L33: 1.6920 L12: 0.6415 REMARK 3 L13: 0.8260 L23: 0.2421 REMARK 3 S TENSOR REMARK 3 S11: -0.1107 S12: -0.1333 S13: 0.1083 REMARK 3 S21: -0.1433 S22: -0.1225 S23: 0.0279 REMARK 3 S31: -0.0873 S32: -0.1542 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2472 92.8559 -1.9156 REMARK 3 T TENSOR REMARK 3 T11: 0.4340 T22: 0.4652 REMARK 3 T33: 0.4083 T12: -0.0542 REMARK 3 T13: -0.0909 T23: 0.0703 REMARK 3 L TENSOR REMARK 3 L11: 0.7181 L22: 0.0909 REMARK 3 L33: 0.4321 L12: -0.0271 REMARK 3 L13: -0.3063 L23: 0.1724 REMARK 3 S TENSOR REMARK 3 S11: -0.0383 S12: -0.3413 S13: -0.0217 REMARK 3 S21: 0.0195 S22: -0.0758 S23: -0.0154 REMARK 3 S31: -0.0160 S32: 0.0087 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -11 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9670 105.6740 16.5067 REMARK 3 T TENSOR REMARK 3 T11: 0.3634 T22: 0.7872 REMARK 3 T33: 0.5839 T12: -0.4112 REMARK 3 T13: 0.0981 T23: -0.0735 REMARK 3 L TENSOR REMARK 3 L11: 0.5818 L22: 0.7147 REMARK 3 L33: 2.7895 L12: 0.6874 REMARK 3 L13: -0.7928 L23: -0.3639 REMARK 3 S TENSOR REMARK 3 S11: -0.4084 S12: 0.2634 S13: -0.5470 REMARK 3 S21: 0.4859 S22: -0.0605 S23: 0.6487 REMARK 3 S31: 1.4681 S32: -1.1500 S33: -0.1735 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 36 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4741 113.1900 20.3491 REMARK 3 T TENSOR REMARK 3 T11: 0.3980 T22: 0.4445 REMARK 3 T33: 0.3332 T12: -0.0934 REMARK 3 T13: 0.0379 T23: 0.0380 REMARK 3 L TENSOR REMARK 3 L11: 1.7641 L22: 1.2088 REMARK 3 L33: 2.2344 L12: 0.0665 REMARK 3 L13: -1.4116 L23: 0.8453 REMARK 3 S TENSOR REMARK 3 S11: -0.1804 S12: -0.0440 S13: -0.0497 REMARK 3 S21: 0.2189 S22: 0.0232 S23: 0.2193 REMARK 3 S31: 0.4314 S32: -0.4749 S33: -0.0021 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6HYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1200012528. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30131 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 45.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.02000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.78000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GNU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V PEG 1500, 0.1 M SPG PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.59500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.39250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 13.79750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -20 REMARK 465 PRO A -19 REMARK 465 THR A -18 REMARK 465 MET A -17 REMARK 465 GLY A -16 REMARK 465 ASP A -15 REMARK 465 GLU A -14 REMARK 465 GLY B -20 REMARK 465 PRO B -19 REMARK 465 THR B -18 REMARK 465 MET B -17 REMARK 465 GLY B -16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A -9 CE NZ REMARK 470 LYS A 2 CE NZ REMARK 470 LYS A 13 CE NZ REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 LYS A 46 NZ REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 ASP B -15 CG OD1 OD2 REMARK 470 GLU B -14 CG CD OE1 OE2 REMARK 470 LYS B 2 CE NZ REMARK 470 LYS B 6 NZ REMARK 470 GLU B 12 CD OE1 OE2 REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 ARG B 15 CZ NH1 NH2 REMARK 470 SER B 16 OG REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 LYS B 24 CE NZ REMARK 470 ARG B 40 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 GLN B 96 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 101 O HOH A 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 106 CD1 TYR A 106 CE1 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 DBREF 6HYM A -15 -2 UNP Q15154 PCM1_HUMAN 1959 1972 DBREF 6HYM A 1 117 UNP O95166 GBRAP_HUMAN 1 117 DBREF 6HYM B -15 -2 UNP Q15154 PCM1_HUMAN 1959 1972 DBREF 6HYM B 1 117 UNP O95166 GBRAP_HUMAN 1 117 SEQADV 6HYM GLY A -20 UNP Q15154 EXPRESSION TAG SEQADV 6HYM PRO A -19 UNP Q15154 EXPRESSION TAG SEQADV 6HYM THR A -18 UNP Q15154 EXPRESSION TAG SEQADV 6HYM MET A -17 UNP Q15154 EXPRESSION TAG SEQADV 6HYM GLY A -16 UNP Q15154 EXPRESSION TAG SEQADV 6HYM GLY A -1 UNP Q15154 LINKER SEQADV 6HYM SER A 0 UNP Q15154 LINKER SEQADV 6HYM GLY B -20 UNP Q15154 EXPRESSION TAG SEQADV 6HYM PRO B -19 UNP Q15154 EXPRESSION TAG SEQADV 6HYM THR B -18 UNP Q15154 EXPRESSION TAG SEQADV 6HYM MET B -17 UNP Q15154 EXPRESSION TAG SEQADV 6HYM GLY B -16 UNP Q15154 EXPRESSION TAG SEQADV 6HYM GLY B -1 UNP Q15154 LINKER SEQADV 6HYM SER B 0 UNP Q15154 LINKER SEQRES 1 A 138 GLY PRO THR MET GLY ASP GLU GLU ASP PHE VAL LYS VAL SEQRES 2 A 138 GLU ASP LEU PRO LEU LYS GLY SER MET LYS PHE VAL TYR SEQRES 3 A 138 LYS GLU GLU HIS PRO PHE GLU LYS ARG ARG SER GLU GLY SEQRES 4 A 138 GLU LYS ILE ARG LYS LYS TYR PRO ASP ARG VAL PRO VAL SEQRES 5 A 138 ILE VAL GLU LYS ALA PRO LYS ALA ARG ILE GLY ASP LEU SEQRES 6 A 138 ASP LYS LYS LYS TYR LEU VAL PRO SER ASP LEU THR VAL SEQRES 7 A 138 GLY GLN PHE TYR PHE LEU ILE ARG LYS ARG ILE HIS LEU SEQRES 8 A 138 ARG ALA GLU ASP ALA LEU PHE PHE PHE VAL ASN ASN VAL SEQRES 9 A 138 ILE PRO PRO THR SER ALA THR MET GLY GLN LEU TYR GLN SEQRES 10 A 138 GLU HIS HIS GLU GLU ASP PHE PHE LEU TYR ILE ALA TYR SEQRES 11 A 138 SER ASP GLU SER VAL TYR GLY LEU SEQRES 1 B 138 GLY PRO THR MET GLY ASP GLU GLU ASP PHE VAL LYS VAL SEQRES 2 B 138 GLU ASP LEU PRO LEU LYS GLY SER MET LYS PHE VAL TYR SEQRES 3 B 138 LYS GLU GLU HIS PRO PHE GLU LYS ARG ARG SER GLU GLY SEQRES 4 B 138 GLU LYS ILE ARG LYS LYS TYR PRO ASP ARG VAL PRO VAL SEQRES 5 B 138 ILE VAL GLU LYS ALA PRO LYS ALA ARG ILE GLY ASP LEU SEQRES 6 B 138 ASP LYS LYS LYS TYR LEU VAL PRO SER ASP LEU THR VAL SEQRES 7 B 138 GLY GLN PHE TYR PHE LEU ILE ARG LYS ARG ILE HIS LEU SEQRES 8 B 138 ARG ALA GLU ASP ALA LEU PHE PHE PHE VAL ASN ASN VAL SEQRES 9 B 138 ILE PRO PRO THR SER ALA THR MET GLY GLN LEU TYR GLN SEQRES 10 B 138 GLU HIS HIS GLU GLU ASP PHE PHE LEU TYR ILE ALA TYR SEQRES 11 B 138 SER ASP GLU SER VAL TYR GLY LEU HET GOL A 201 6 HET GOL A 202 6 HET GOL A 203 6 HET GOL B 201 6 HET EDO B 202 4 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *192(H2 O) HELIX 1 AA1 PHE A 3 HIS A 9 1 7 HELIX 2 AA2 PRO A 10 TYR A 25 1 16 HELIX 3 AA3 THR A 56 HIS A 69 1 14 HELIX 4 AA4 THR A 90 HIS A 99 1 10 HELIX 5 AA5 SER A 113 LEU A 117 5 5 HELIX 6 AA6 PHE B 3 GLU B 8 1 6 HELIX 7 AA7 PRO B 10 TYR B 25 1 16 HELIX 8 AA8 THR B 56 ILE B 68 1 13 HELIX 9 AA9 THR B 90 HIS B 99 1 10 HELIX 10 AB1 SER B 113 LEU B 117 5 5 SHEET 1 AA1 4 LYS A 48 PRO A 52 0 SHEET 2 AA1 4 ARG A 28 LYS A 35 -1 N VAL A 31 O TYR A 49 SHEET 3 AA1 4 LEU A 105 SER A 110 1 O ILE A 107 N ILE A 32 SHEET 4 AA1 4 PHE A 77 PHE A 79 -1 N PHE A 79 O ALA A 108 SHEET 1 AA2 4 LYS B 48 PRO B 52 0 SHEET 2 AA2 4 ARG B 28 LYS B 35 -1 N VAL B 29 O VAL B 51 SHEET 3 AA2 4 LEU B 105 SER B 110 1 O ILE B 107 N ILE B 32 SHEET 4 AA2 4 PHE B 77 PHE B 79 -1 N PHE B 77 O SER B 110 SITE 1 AC1 6 TYR A 61 ARG A 65 LEU A 76 PHE A 77 SITE 2 AC1 6 HOH A 320 HOH A 321 SITE 1 AC2 6 ASP A -6 LEU A -5 VAL A -10 ARG A 67 SITE 2 AC2 6 HOH A 306 HOH A 319 SITE 1 AC3 4 SER A 0 MET A 1 LYS A 2 LYS A 35 SITE 1 AC4 6 TYR B 61 ARG B 65 LEU B 76 HOH B 310 SITE 2 AC4 6 HOH B 322 HOH B 348 SITE 1 AC5 3 ARG B 22 PRO B 26 SER B 53 CRYST1 80.873 80.873 55.190 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012365 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012365 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018119 0.00000