PDB Short entry for 6I9S HEADER SIGNALING PROTEIN 25-NOV-18 6I9S TITLE HROBO2 EXTRACELLULAR DOMAINS 2-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROUNDABOUT HOMOLOG 2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ROBO2, KIAA1568; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS SLIT, ROBO, AXON GUIDANCE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.BARAK,N.M.ISUPOV,Y.OPATOWSKY REVDAT 3 17-APR-19 6I9S 1 JRNL REVDAT 2 20-MAR-19 6I9S 1 JRNL REVDAT 1 13-MAR-19 6I9S 0 JRNL AUTH R.BARAK,G.YOM-TOV,J.GUEZ-HADDAD,L.GASRI-PLOTNITSKY,R.MAIMON, JRNL AUTH 2 M.COHEN-BERKMAN,A.A.MCCARTHY,E.PERLSON,S.HENIS-KORENBLIT, JRNL AUTH 3 M.N.ISUPOV,Y.OPATOWSKY JRNL TITL STRUCTURAL PRINCIPLES IN ROBO ACTIVATION AND JRNL TITL 2 AUTO-INHIBITION. JRNL REF CELL V. 177 272 2019 JRNL REFN ISSN 1097-4172 JRNL PMID 30853216 JRNL DOI 10.1016/J.CELL.2019.02.004 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 14867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 793 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1054 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3610 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.4130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2954 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.50000 REMARK 3 B22 (A**2) : -5.07000 REMARK 3 B33 (A**2) : 6.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.596 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.334 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.316 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.638 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3016 ; 0.011 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2701 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4066 ; 1.443 ; 1.681 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6386 ; 0.795 ; 1.639 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 369 ; 8.270 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;33.529 ;20.989 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 553 ;20.523 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;19.786 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3384 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 488 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1482 ; 5.430 ; 6.895 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1481 ; 5.430 ; 6.889 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1849 ; 8.083 ;10.330 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1850 ; 8.081 ;10.337 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1534 ; 6.555 ; 7.712 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1533 ; 6.554 ; 7.718 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2218 ;10.242 ;11.245 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2980 ;13.052 ;77.766 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2979 ;13.050 ;77.821 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6I9S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-18. REMARK 100 THE DEPOSITION ID IS D_1200013073. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15692 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 46.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM FORMAT PH 7 AND 20% PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.11000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.64000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.26000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.64000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.11000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.26000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 115 REMARK 465 TYR A 116 REMARK 465 LYS A 117 REMARK 465 ASP A 118 REMARK 465 ASP A 119 REMARK 465 ASP A 120 REMARK 465 ASP A 121 REMARK 465 LYS A 122 REMARK 465 ARG A 123 REMARK 465 PRO A 124 REMARK 465 HIS A 125 REMARK 465 LYS A 313 REMARK 465 LEU A 314 REMARK 465 GLY A 315 REMARK 465 SER A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 ASP B 115 REMARK 465 TYR B 116 REMARK 465 LYS B 117 REMARK 465 ASP B 118 REMARK 465 ASP B 119 REMARK 465 ASP B 120 REMARK 465 ASP B 121 REMARK 465 LYS B 122 REMARK 465 ARG B 123 REMARK 465 PRO B 124 REMARK 465 HIS B 125 REMARK 465 LEU B 126 REMARK 465 ARG B 311 REMARK 465 ALA B 312 REMARK 465 LYS B 313 REMARK 465 LEU B 314 REMARK 465 GLY B 315 REMARK 465 SER B 316 REMARK 465 HIS B 317 REMARK 465 HIS B 318 REMARK 465 HIS B 319 REMARK 465 HIS B 320 REMARK 465 HIS B 321 REMARK 465 HIS B 322 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 176 30.88 -99.82 REMARK 500 GLU A 239 84.49 65.49 REMARK 500 GLU A 240 151.98 165.77 REMARK 500 TYR A 276 43.99 -82.46 REMARK 500 ALA B 146 125.26 -38.33 REMARK 500 GLU B 239 -25.72 76.46 REMARK 500 ALA B 241 124.12 -35.28 REMARK 500 CYS B 246 103.23 -165.09 REMARK 500 LYS B 260 119.66 -160.64 REMARK 500 LYS B 273 -141.39 -98.80 REMARK 500 TYR B 276 37.14 -84.22 REMARK 500 MET B 284 -145.56 -158.99 REMARK 500 GLU B 288 54.75 -107.36 REMARK 500 ASN B 297 -166.79 -125.97 REMARK 500 ALA B 304 101.05 -161.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 229 0.08 SIDE CHAIN REMARK 500 ARG B 132 0.08 SIDE CHAIN REMARK 500 ARG B 229 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 176 O REMARK 620 2 GLU A 178 O 85.6 REMARK 620 3 ILE A 181 O 97.2 78.2 REMARK 620 4 HOH A 544 O 104.5 168.1 94.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 176 O REMARK 620 2 GLU B 178 O 78.4 REMARK 620 3 ILE B 181 O 89.8 79.6 REMARK 620 4 HOH B 516 O 78.8 157.2 98.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 401 DBREF 6I9S A 126 312 UNP Q9HCK4 ROBO2_HUMAN 126 312 DBREF 6I9S B 126 312 UNP Q9HCK4 ROBO2_HUMAN 126 312 SEQADV 6I9S ASP A 115 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S TYR A 116 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S LYS A 117 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S ASP A 118 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S ASP A 119 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S ASP A 120 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S ASP A 121 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S LYS A 122 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S ARG A 123 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S PRO A 124 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S HIS A 125 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S LYS A 313 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S LEU A 314 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S GLY A 315 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S SER A 316 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S HIS A 317 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S HIS A 318 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S HIS A 319 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S HIS A 320 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S HIS A 321 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S HIS A 322 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S ASP B 115 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S TYR B 116 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S LYS B 117 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S ASP B 118 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S ASP B 119 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S ASP B 120 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S ASP B 121 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S LYS B 122 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S ARG B 123 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S PRO B 124 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S HIS B 125 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S LYS B 313 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S LEU B 314 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S GLY B 315 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S SER B 316 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S HIS B 317 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S HIS B 318 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S HIS B 319 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S HIS B 320 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S HIS B 321 UNP Q9HCK4 EXPRESSION TAG SEQADV 6I9S HIS B 322 UNP Q9HCK4 EXPRESSION TAG SEQRES 1 A 208 ASP TYR LYS ASP ASP ASP ASP LYS ARG PRO HIS LEU GLU SEQRES 2 A 208 VAL ALA LEU LEU ARG ASP ASP PHE ARG GLN ASN PRO THR SEQRES 3 A 208 ASP VAL VAL VAL ALA ALA GLY GLU PRO ALA ILE LEU GLU SEQRES 4 A 208 CYS GLN PRO PRO ARG GLY HIS PRO GLU PRO THR ILE TYR SEQRES 5 A 208 TRP LYS LYS ASP LYS VAL ARG ILE ASP ASP LYS GLU GLU SEQRES 6 A 208 ARG ILE SER ILE ARG GLY GLY LYS LEU MET ILE SER ASN SEQRES 7 A 208 THR ARG LYS SER ASP ALA GLY MET TYR THR CYS VAL GLY SEQRES 8 A 208 THR ASN MET VAL GLY GLU ARG ASP SER ASP PRO ALA GLU SEQRES 9 A 208 LEU THR VAL PHE GLU ARG PRO THR PHE LEU ARG ARG PRO SEQRES 10 A 208 ILE ASN GLN VAL VAL LEU GLU GLU GLU ALA VAL GLU PHE SEQRES 11 A 208 ARG CYS GLN VAL GLN GLY ASP PRO GLN PRO THR VAL ARG SEQRES 12 A 208 TRP LYS LYS ASP ASP ALA ASP LEU PRO ARG GLY ARG TYR SEQRES 13 A 208 ASP ILE LYS ASP ASP TYR THR LEU ARG ILE LYS LYS THR SEQRES 14 A 208 MET SER THR ASP GLU GLY THR TYR MET CYS ILE ALA GLU SEQRES 15 A 208 ASN ARG VAL GLY LYS MET GLU ALA SER ALA THR LEU THR SEQRES 16 A 208 VAL ARG ALA LYS LEU GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 208 ASP TYR LYS ASP ASP ASP ASP LYS ARG PRO HIS LEU GLU SEQRES 2 B 208 VAL ALA LEU LEU ARG ASP ASP PHE ARG GLN ASN PRO THR SEQRES 3 B 208 ASP VAL VAL VAL ALA ALA GLY GLU PRO ALA ILE LEU GLU SEQRES 4 B 208 CYS GLN PRO PRO ARG GLY HIS PRO GLU PRO THR ILE TYR SEQRES 5 B 208 TRP LYS LYS ASP LYS VAL ARG ILE ASP ASP LYS GLU GLU SEQRES 6 B 208 ARG ILE SER ILE ARG GLY GLY LYS LEU MET ILE SER ASN SEQRES 7 B 208 THR ARG LYS SER ASP ALA GLY MET TYR THR CYS VAL GLY SEQRES 8 B 208 THR ASN MET VAL GLY GLU ARG ASP SER ASP PRO ALA GLU SEQRES 9 B 208 LEU THR VAL PHE GLU ARG PRO THR PHE LEU ARG ARG PRO SEQRES 10 B 208 ILE ASN GLN VAL VAL LEU GLU GLU GLU ALA VAL GLU PHE SEQRES 11 B 208 ARG CYS GLN VAL GLN GLY ASP PRO GLN PRO THR VAL ARG SEQRES 12 B 208 TRP LYS LYS ASP ASP ALA ASP LEU PRO ARG GLY ARG TYR SEQRES 13 B 208 ASP ILE LYS ASP ASP TYR THR LEU ARG ILE LYS LYS THR SEQRES 14 B 208 MET SER THR ASP GLU GLY THR TYR MET CYS ILE ALA GLU SEQRES 15 B 208 ASN ARG VAL GLY LYS MET GLU ALA SER ALA THR LEU THR SEQRES 16 B 208 VAL ARG ALA LYS LEU GLY SER HIS HIS HIS HIS HIS HIS HET NA A 401 1 HET NA B 401 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *68(H2 O) HELIX 1 AA1 ARG A 194 ALA A 198 5 5 HELIX 2 AA2 MET A 284 GLU A 288 5 5 HELIX 3 AA3 ARG B 194 ALA B 198 5 5 SHEET 1 AA1 2 LEU A 130 LEU A 131 0 SHEET 2 AA1 2 GLY A 159 HIS A 160 -1 O HIS A 160 N LEU A 130 SHEET 1 AA2 4 VAL A 142 ALA A 145 0 SHEET 2 AA2 4 ALA A 217 ARG A 229 1 O PHE A 222 N VAL A 144 SHEET 3 AA2 4 GLY A 199 ASN A 207 -1 N TYR A 201 O ALA A 217 SHEET 4 AA2 4 GLY A 210 ASP A 213 -1 O ARG A 212 N GLY A 205 SHEET 1 AA3 5 VAL A 172 ARG A 173 0 SHEET 2 AA3 5 THR A 164 LYS A 169 -1 N LYS A 169 O VAL A 172 SHEET 3 AA3 5 GLY A 199 ASN A 207 -1 O THR A 202 N LYS A 168 SHEET 4 AA3 5 ALA A 217 ARG A 229 -1 O ALA A 217 N TYR A 201 SHEET 5 AA3 5 GLN A 247 ASP A 251 -1 O GLN A 249 N THR A 226 SHEET 1 AA4 3 ALA A 150 GLU A 153 0 SHEET 2 AA4 3 LYS A 187 ILE A 190 -1 O ILE A 190 N ALA A 150 SHEET 3 AA4 3 ILE A 181 ARG A 184 -1 N SER A 182 O MET A 189 SHEET 1 AA5 4 GLN A 234 LEU A 237 0 SHEET 2 AA5 4 GLY A 300 ARG A 311 1 O THR A 309 N VAL A 236 SHEET 3 AA5 4 GLY A 289 ASN A 297 -1 N CYS A 293 O ALA A 304 SHEET 4 AA5 4 THR A 255 LYS A 260 -1 N THR A 255 O GLU A 296 SHEET 1 AA6 3 VAL A 242 PHE A 244 0 SHEET 2 AA6 3 LEU A 278 ILE A 280 -1 O LEU A 278 N PHE A 244 SHEET 3 AA6 3 ASP A 271 ILE A 272 -1 N ASP A 271 O ARG A 279 SHEET 1 AA7 2 LEU B 130 LEU B 131 0 SHEET 2 AA7 2 GLY B 159 HIS B 160 -1 O HIS B 160 N LEU B 130 SHEET 1 AA8 4 VAL B 142 ALA B 145 0 SHEET 2 AA8 4 ALA B 217 ARG B 229 1 O THR B 220 N VAL B 144 SHEET 3 AA8 4 GLY B 199 ASN B 207 -1 N TYR B 201 O ALA B 217 SHEET 4 AA8 4 GLY B 210 ASP B 213 -1 O ARG B 212 N GLY B 205 SHEET 1 AA9 5 VAL B 172 ARG B 173 0 SHEET 2 AA9 5 THR B 164 LYS B 169 -1 N LYS B 169 O VAL B 172 SHEET 3 AA9 5 GLY B 199 ASN B 207 -1 O VAL B 204 N TYR B 166 SHEET 4 AA9 5 ALA B 217 ARG B 229 -1 O ALA B 217 N TYR B 201 SHEET 5 AA9 5 GLN B 247 ASP B 251 -1 O GLN B 247 N LEU B 228 SHEET 1 AB1 3 ALA B 150 GLU B 153 0 SHEET 2 AB1 3 LYS B 187 ILE B 190 -1 O ILE B 190 N ALA B 150 SHEET 3 AB1 3 ILE B 181 ARG B 184 -1 N SER B 182 O MET B 189 SHEET 1 AB2 3 GLU B 243 PHE B 244 0 SHEET 2 AB2 3 LEU B 278 ARG B 279 -1 O LEU B 278 N PHE B 244 SHEET 3 AB2 3 ASP B 271 ILE B 272 -1 N ASP B 271 O ARG B 279 SHEET 1 AB3 3 THR B 255 TRP B 258 0 SHEET 2 AB3 3 CYS B 293 ASN B 297 -1 O ILE B 294 N ARG B 257 SHEET 3 AB3 3 GLY B 300 ALA B 304 -1 O MET B 302 N ALA B 295 SSBOND 1 CYS A 154 CYS A 203 1555 1555 2.06 SSBOND 2 CYS A 246 CYS A 293 1555 1555 2.05 SSBOND 3 CYS B 154 CYS B 203 1555 1555 2.03 SSBOND 4 CYS B 246 CYS B 293 1555 1555 2.03 LINK O ASP A 176 NA NA A 401 1555 1555 2.35 LINK O GLU A 178 NA NA A 401 1555 1555 2.28 LINK O ILE A 181 NA NA A 401 1555 1555 2.33 LINK O ASP B 176 NA NA B 401 1555 1555 2.34 LINK O GLU B 178 NA NA B 401 1555 1555 2.31 LINK O ILE B 181 NA NA B 401 1555 1555 2.31 LINK NA NA A 401 O HOH A 544 1555 1555 2.30 LINK NA NA B 401 O HOH B 516 1555 1555 2.29 CISPEP 1 HIS A 160 PRO A 161 0 -4.58 CISPEP 2 ASP A 251 PRO A 252 0 -8.11 CISPEP 3 HIS B 160 PRO B 161 0 -0.21 CISPEP 4 ASP B 251 PRO B 252 0 -11.79 SITE 1 AC1 5 ASP A 176 GLU A 178 GLU A 179 ILE A 181 SITE 2 AC1 5 HOH A 544 SITE 1 AC2 5 ASP B 176 GLU B 178 GLU B 179 ILE B 181 SITE 2 AC2 5 HOH B 516 CRYST1 62.220 70.520 97.280 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016072 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010280 0.00000