PDB Short entry for 6ICI HEADER FLAVOPROTEIN 06-SEP-18 6ICI TITLE CRYSTAL STRUCTURE OF HUMAN MICAL3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: [F-ACTIN]-MONOOXYGENASE MICAL3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MOLECULE INTERACTING WITH CASL PROTEIN 3,MICAL-3; COMPND 5 EC: 1.14.13.225; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MICAL3, KIAA0819, KIAA1364; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MONOOXYGENASE, OXIDOREDUCTASE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.Y.HWANG,J.S.KIM REVDAT 2 22-NOV-23 6ICI 1 REMARK REVDAT 1 04-MAR-20 6ICI 0 JRNL AUTH J.KIM,H.LEE,Y.J.ROH,H.U.KIM,D.SHIN,S.KIM,J.SON,A.LEE,M.KIM, JRNL AUTH 2 J.PARK,S.Y.HWANG,K.KIM,Y.K.LEE,H.S.JUNG,K.Y.HWANG,B.C.LEE JRNL TITL STRUCTURAL AND KINETIC INSIGHTS INTO FLAVIN-CONTAINING JRNL TITL 2 MONOOXYGENASE AND CALPONIN-HOMOLOGY DOMAINS IN HUMAN MICAL3. JRNL REF IUCRJ V. 7 90 2020 JRNL REFN ESSN 2052-2525 JRNL PMID 31949908 JRNL DOI 10.1107/S2052252519015409 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 38112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2000 - 4.7800 0.99 4141 142 0.1730 0.2021 REMARK 3 2 4.7800 - 3.8000 1.00 4092 138 0.1465 0.1689 REMARK 3 3 3.8000 - 3.3200 1.00 4138 137 0.1685 0.2149 REMARK 3 4 3.3200 - 3.0100 1.00 4072 131 0.1821 0.2427 REMARK 3 5 3.0100 - 2.8000 1.00 4112 134 0.1853 0.2315 REMARK 3 6 2.8000 - 2.6300 1.00 4090 132 0.1903 0.2376 REMARK 3 7 2.6300 - 2.5000 1.00 4075 133 0.1901 0.2681 REMARK 3 8 2.5000 - 2.3900 1.00 4097 136 0.1887 0.3020 REMARK 3 9 2.3900 - 2.3000 1.00 4074 138 0.1862 0.2381 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.235 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4828 REMARK 3 ANGLE : 0.967 6535 REMARK 3 CHIRALITY : 0.057 718 REMARK 3 PLANARITY : 0.006 827 REMARK 3 DIHEDRAL : 18.981 1765 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ICI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1300008983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38165 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.850 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4TXI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE-NAOH PH 9.2, 7% MPD, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.73300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -35 REMARK 465 GLY A -34 REMARK 465 SER A -33 REMARK 465 SER A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 SER A -25 REMARK 465 SER A -24 REMARK 465 GLY A -23 REMARK 465 LEU A -22 REMARK 465 VAL A -21 REMARK 465 PRO A -20 REMARK 465 ARG A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 MET A -15 REMARK 465 ALA A -14 REMARK 465 SER A -13 REMARK 465 MET A -12 REMARK 465 THR A -11 REMARK 465 GLY A -10 REMARK 465 GLY A -9 REMARK 465 GLU A -8 REMARK 465 GLU A -7 REMARK 465 MET A -6 REMARK 465 GLY A -5 REMARK 465 ARG A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 ASN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 HIS A 6 REMARK 465 GLU A 7 REMARK 465 THR A 8 REMARK 465 MET A 9 REMARK 465 GLN A 193 REMARK 465 GLU A 194 REMARK 465 ASN A 195 REMARK 465 GLU A 196 REMARK 465 PHE A 270 REMARK 465 GLU A 492 REMARK 465 THR A 493 REMARK 465 LYS A 494 REMARK 465 ASP A 495 REMARK 465 ILE A 496 REMARK 465 HIS A 497 REMARK 465 LEU A 498 REMARK 465 GLU A 499 REMARK 465 MET A 500 REMARK 465 GLU A 501 REMARK 465 SER A 502 REMARK 465 LEU A 503 REMARK 465 VAL A 504 REMARK 465 ASN A 505 REMARK 465 SER A 506 REMARK 465 ARG A 507 REMARK 465 THR A 508 REMARK 465 THR A 509 REMARK 465 PRO A 510 REMARK 465 LYS A 511 REMARK 465 LEU A 512 REMARK 465 THR A 513 REMARK 465 ARG A 514 REMARK 465 ASN A 515 REMARK 465 GLU A 516 REMARK 465 SER A 517 REMARK 465 VAL A 518 REMARK 465 ALA A 519 REMARK 465 PRO A 628 REMARK 465 SER A 629 REMARK 465 SER A 630 REMARK 465 ASP A 631 REMARK 465 THR A 632 REMARK 465 LEU A 633 REMARK 465 ASP A 634 REMARK 465 LEU A 635 REMARK 465 ASN A 636 REMARK 465 ALA A 637 REMARK 465 GLU A 638 REMARK 465 GLU A 639 REMARK 465 LYS A 640 REMARK 465 ALA A 641 REMARK 465 VAL A 642 REMARK 465 LEU A 643 REMARK 465 ILE A 644 REMARK 465 ALA A 645 REMARK 465 SER A 646 REMARK 465 THR A 647 REMARK 465 ARG A 648 REMARK 465 SER A 649 REMARK 465 PRO A 650 REMARK 465 ILE A 651 REMARK 465 SER A 652 REMARK 465 PHE A 653 REMARK 465 LEU A 654 REMARK 465 SER A 655 REMARK 465 LYS A 656 REMARK 465 LEU A 657 REMARK 465 GLY A 658 REMARK 465 GLN A 659 REMARK 465 THR A 660 REMARK 465 ILE A 661 REMARK 465 SER A 662 REMARK 465 ARG A 663 REMARK 465 LYS A 664 REMARK 465 ARG A 665 REMARK 465 SER A 666 REMARK 465 PRO A 667 REMARK 465 LYS A 668 REMARK 465 ASP A 669 REMARK 465 LYS A 670 REMARK 465 LYS A 671 REMARK 465 GLU A 672 REMARK 465 LYS A 673 REMARK 465 ASP A 674 REMARK 465 LEU A 675 REMARK 465 ASP A 676 REMARK 465 GLY A 677 REMARK 465 ALA A 678 REMARK 465 GLY A 679 REMARK 465 LYS A 680 REMARK 465 ARG A 681 REMARK 465 ARG A 682 REMARK 465 LYS A 683 REMARK 465 THR A 684 REMARK 465 SER A 685 REMARK 465 GLN A 686 REMARK 465 SER A 687 REMARK 465 GLU A 688 REMARK 465 GLU A 689 REMARK 465 GLU A 690 REMARK 465 GLU A 691 REMARK 465 ALA A 692 REMARK 465 PRO A 693 REMARK 465 ARG A 694 REMARK 465 GLY A 695 REMARK 465 HIS A 696 REMARK 465 ARG A 697 REMARK 465 GLY A 698 REMARK 465 GLU A 699 REMARK 465 ARG A 700 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 227 CG OD1 ND2 REMARK 470 ASN A 271 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 322 O HOH A 901 1.88 REMARK 500 OD1 ASP A 320 O HOH A 901 1.93 REMARK 500 OG1 THR A 228 O HOH A 902 1.93 REMARK 500 OG1 THR A 255 O HOH A 903 1.98 REMARK 500 OE2 GLU A 213 NH2 ARG A 530 2.01 REMARK 500 O SER A 264 O HOH A 904 2.10 REMARK 500 OG1 THR A 321 O HOH A 905 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1010 O HOH A 1148 1556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 572 CG GLU A 572 CD 0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 94 43.46 -104.97 REMARK 500 TYR A 146 89.22 -157.22 REMARK 500 ASP A 294 -148.19 -134.92 REMARK 500 ASN A 539 98.60 -164.08 REMARK 500 THR A 544 -84.53 -132.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 191 ASP A 192 147.64 REMARK 500 GLY A 265 VAL A 266 149.70 REMARK 500 ASP A 320 THR A 321 -140.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 801 DBREF 6ICI A 1 700 UNP Q7RTP6 MICA3_HUMAN 1 700 SEQADV 6ICI MET A -35 UNP Q7RTP6 INITIATING METHIONINE SEQADV 6ICI GLY A -34 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI SER A -33 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI SER A -32 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI HIS A -31 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI HIS A -30 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI HIS A -29 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI HIS A -28 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI HIS A -27 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI HIS A -26 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI SER A -25 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI SER A -24 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI GLY A -23 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI LEU A -22 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI VAL A -21 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI PRO A -20 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI ARG A -19 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI GLY A -18 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI SER A -17 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI HIS A -16 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI MET A -15 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI ALA A -14 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI SER A -13 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI MET A -12 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI THR A -11 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI GLY A -10 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI GLY A -9 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI GLU A -8 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI GLU A -7 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI MET A -6 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI GLY A -5 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI ARG A -4 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI ASP A -3 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI PRO A -2 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI ASN A -1 UNP Q7RTP6 EXPRESSION TAG SEQADV 6ICI SER A 0 UNP Q7RTP6 EXPRESSION TAG SEQRES 1 A 736 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 736 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 736 GLY GLU GLU MET GLY ARG ASP PRO ASN SER MET GLU GLU SEQRES 4 A 736 ARG LYS HIS GLU THR MET ASN PRO ALA HIS VAL LEU PHE SEQRES 5 A 736 ASP ARG PHE VAL GLN ALA THR THR CYS LYS GLY THR LEU SEQRES 6 A 736 LYS ALA PHE GLN GLU LEU CYS ASP HIS LEU GLU LEU LYS SEQRES 7 A 736 PRO LYS ASP TYR ARG SER PHE TYR HIS LYS LEU LYS SER SEQRES 8 A 736 LYS LEU ASN TYR TRP LYS ALA LYS ALA LEU TRP ALA LYS SEQRES 9 A 736 LEU ASP LYS ARG GLY SER HIS LYS ASP TYR LYS LYS GLY SEQRES 10 A 736 LYS ALA CYS THR ASN THR LYS CYS LEU ILE ILE GLY ALA SEQRES 11 A 736 GLY PRO CYS GLY LEU ARG THR ALA ILE ASP LEU SER LEU SEQRES 12 A 736 LEU GLY ALA LYS VAL VAL VAL ILE GLU LYS ARG ASP ALA SEQRES 13 A 736 PHE SER ARG ASN ASN VAL LEU HIS LEU TRP PRO PHE THR SEQRES 14 A 736 ILE HIS ASP LEU ARG GLY LEU GLY ALA LYS LYS PHE TYR SEQRES 15 A 736 GLY LYS PHE CYS ALA GLY ALA ILE ASP HIS ILE SER ILE SEQRES 16 A 736 ARG GLN LEU GLN LEU ILE LEU LEU LYS VAL ALA LEU ILE SEQRES 17 A 736 LEU GLY ILE GLU ILE HIS VAL ASN VAL GLU PHE GLN GLY SEQRES 18 A 736 LEU ILE GLN PRO PRO GLU ASP GLN GLU ASN GLU ARG ILE SEQRES 19 A 736 GLY TRP ARG ALA LEU VAL HIS PRO LYS THR HIS PRO VAL SEQRES 20 A 736 SER GLU TYR GLU PHE GLU VAL ILE ILE GLY GLY ASP GLY SEQRES 21 A 736 ARG ARG ASN THR LEU GLU GLY PHE ARG ARG LYS GLU PHE SEQRES 22 A 736 ARG GLY LYS LEU ALA ILE ALA ILE THR ALA ASN PHE ILE SEQRES 23 A 736 ASN ARG ASN THR THR ALA GLU ALA LYS VAL GLU GLU ILE SEQRES 24 A 736 SER GLY VAL ALA PHE ILE PHE ASN GLN LYS PHE PHE GLN SEQRES 25 A 736 GLU LEU ARG GLU ALA THR GLY ILE ASP LEU GLU ASN ILE SEQRES 26 A 736 VAL TYR TYR LYS ASP ASP THR HIS TYR PHE VAL MET THR SEQRES 27 A 736 ALA LYS LYS GLN SER LEU LEU ASP LYS GLY VAL ILE LEU SEQRES 28 A 736 HIS ASP TYR ALA ASP THR GLU LEU LEU LEU SER ARG GLU SEQRES 29 A 736 ASN VAL ASP GLN GLU ALA LEU LEU SER TYR ALA ARG GLU SEQRES 30 A 736 ALA ALA ASP PHE SER THR GLN GLN GLN LEU PRO SER LEU SEQRES 31 A 736 ASP PHE ALA ILE ASN HIS TYR GLY GLN PRO ASP VAL ALA SEQRES 32 A 736 MET PHE ASP PHE THR CYS MET TYR ALA SER GLU ASN ALA SEQRES 33 A 736 ALA LEU VAL ARG GLU GLN ASN GLY HIS GLN LEU LEU VAL SEQRES 34 A 736 ALA LEU VAL GLY ASP SER LEU LEU GLU PRO PHE TRP PRO SEQRES 35 A 736 MET GLY THR GLY ILE ALA ARG GLY PHE LEU ALA ALA MET SEQRES 36 A 736 ASP SER ALA TRP MET VAL ARG SER TRP SER LEU GLY THR SEQRES 37 A 736 SER PRO LEU GLU VAL LEU ALA GLU ARG GLU SER ILE TYR SEQRES 38 A 736 ARG LEU LEU PRO GLN THR THR PRO GLU ASN VAL SER LYS SEQRES 39 A 736 ASN PHE SER GLN TYR SER ILE ASP PRO VAL THR ARG TYR SEQRES 40 A 736 PRO ASN ILE ASN VAL ASN PHE LEU ARG PRO SER GLN VAL SEQRES 41 A 736 ARG HIS LEU TYR ASP THR GLY GLU THR LYS ASP ILE HIS SEQRES 42 A 736 LEU GLU MET GLU SER LEU VAL ASN SER ARG THR THR PRO SEQRES 43 A 736 LYS LEU THR ARG ASN GLU SER VAL ALA ARG SER SER LYS SEQRES 44 A 736 LEU LEU GLY TRP CYS GLN ARG GLN THR ASP GLY TYR ALA SEQRES 45 A 736 GLY VAL ASN VAL THR ASP LEU THR MET SER TRP LYS SER SEQRES 46 A 736 GLY LEU ALA LEU CYS ALA ILE ILE HIS ARG TYR ARG PRO SEQRES 47 A 736 ASP LEU ILE ASP PHE ASP SER LEU ASP GLU GLN ASN VAL SEQRES 48 A 736 GLU LYS ASN ASN GLN LEU ALA PHE ASP ILE ALA GLU LYS SEQRES 49 A 736 GLU LEU GLY ILE SER PRO ILE MET THR GLY LYS GLU MET SEQRES 50 A 736 ALA SER VAL GLY GLU PRO ASP LYS LEU SER MET VAL MET SEQRES 51 A 736 TYR LEU THR GLN PHE TYR GLU MET PHE LYS ASP SER LEU SEQRES 52 A 736 PRO SER SER ASP THR LEU ASP LEU ASN ALA GLU GLU LYS SEQRES 53 A 736 ALA VAL LEU ILE ALA SER THR ARG SER PRO ILE SER PHE SEQRES 54 A 736 LEU SER LYS LEU GLY GLN THR ILE SER ARG LYS ARG SER SEQRES 55 A 736 PRO LYS ASP LYS LYS GLU LYS ASP LEU ASP GLY ALA GLY SEQRES 56 A 736 LYS ARG ARG LYS THR SER GLN SER GLU GLU GLU GLU ALA SEQRES 57 A 736 PRO ARG GLY HIS ARG GLY GLU ARG HET FAD A 801 84 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *273(H2 O) HELIX 1 AA1 ASN A 10 GLN A 21 1 12 HELIX 2 AA2 THR A 24 LEU A 39 1 16 HELIX 3 AA3 SER A 48 LEU A 57 1 10 HELIX 4 AA4 TYR A 59 SER A 74 1 16 HELIX 5 AA5 HIS A 75 LYS A 82 5 8 HELIX 6 AA6 GLY A 95 LEU A 108 1 14 HELIX 7 AA7 TRP A 130 LEU A 140 1 11 HELIX 8 AA8 GLY A 141 TYR A 146 1 6 HELIX 9 AA9 ILE A 159 LEU A 173 1 15 HELIX 10 AB1 HIS A 209 TYR A 214 5 6 HELIX 11 AB2 ASP A 223 ASN A 227 5 5 HELIX 12 AB3 THR A 254 VAL A 260 1 7 HELIX 13 AB4 GLN A 272 GLY A 283 1 12 HELIX 14 AB5 LYS A 304 LYS A 311 1 8 HELIX 15 AB6 ASP A 320 LEU A 325 1 6 HELIX 16 AB7 SER A 326 VAL A 330 5 5 HELIX 17 AB8 ASP A 331 THR A 347 1 17 HELIX 18 AB9 GLY A 397 LEU A 400 5 4 HELIX 19 AC1 PHE A 404 GLY A 408 5 5 HELIX 20 AC2 THR A 409 LEU A 430 1 22 HELIX 21 AC3 SER A 433 ARG A 446 1 14 HELIX 22 AC4 LEU A 447 THR A 451 5 5 HELIX 23 AC5 ASN A 459 TYR A 463 5 5 HELIX 24 AC6 ASP A 466 ARG A 470 5 5 HELIX 25 AC7 ARG A 480 HIS A 486 5 7 HELIX 26 AC8 SER A 521 ASP A 533 1 13 HELIX 27 AC9 THR A 544 LYS A 548 5 5 HELIX 28 AD1 GLY A 550 ARG A 561 1 12 HELIX 29 AD2 ASN A 574 GLY A 591 1 18 HELIX 30 AD3 THR A 597 SER A 603 1 7 HELIX 31 AD4 ASP A 608 LYS A 624 1 17 SHEET 1 AA1 7 GLU A 176 HIS A 178 0 SHEET 2 AA1 7 LYS A 111 ILE A 115 1 N VAL A 114 O GLU A 176 SHEET 3 AA1 7 LYS A 88 ILE A 92 1 N ILE A 91 O VAL A 113 SHEET 4 AA1 7 VAL A 218 GLY A 221 1 O ILE A 220 N ILE A 92 SHEET 5 AA1 7 HIS A 389 LEU A 395 1 O ALA A 394 N GLY A 221 SHEET 6 AA1 7 ALA A 381 GLN A 386 -1 N ARG A 384 O LEU A 391 SHEET 7 AA1 7 TYR A 488 ASP A 489 1 O ASP A 489 N VAL A 383 SHEET 1 AA2 2 VAL A 126 HIS A 128 0 SHEET 2 AA2 2 HIS A 156 SER A 158 -1 O ILE A 157 N LEU A 127 SHEET 1 AA3 2 GLU A 182 ILE A 187 0 SHEET 2 AA3 2 ARG A 201 HIS A 205 -1 O LEU A 203 N GLY A 185 SHEET 1 AA4 2 ARG A 234 ARG A 238 0 SHEET 2 AA4 2 CYS A 373 SER A 377 -1 O ALA A 376 N LYS A 235 SHEET 1 AA5 4 LEU A 286 LYS A 293 0 SHEET 2 AA5 4 THR A 296 ALA A 303 -1 O VAL A 300 N VAL A 290 SHEET 3 AA5 4 ILE A 243 ILE A 250 -1 N PHE A 249 O HIS A 297 SHEET 4 AA5 4 VAL A 366 ASP A 370 -1 O PHE A 369 N ALA A 244 CISPEP 1 HIS A 205 PRO A 206 0 0.33 SITE 1 AC1 32 GLY A 93 GLY A 95 PRO A 96 CYS A 97 SITE 2 AC1 32 GLU A 116 LYS A 117 ARG A 118 ARG A 123 SITE 3 AC1 32 ASN A 125 VAL A 126 LEU A 127 ILE A 159 SITE 4 AC1 32 VAL A 181 GLU A 182 PHE A 183 GLY A 222 SITE 5 AC1 32 ASP A 223 TYR A 298 GLY A 397 ASP A 398 SITE 6 AC1 32 TRP A 405 HOH A 945 HOH A 968 HOH A 970 SITE 7 AC1 32 HOH A 972 HOH A 995 HOH A 998 HOH A1004 SITE 8 AC1 32 HOH A1031 HOH A1038 HOH A1066 HOH A1088 CRYST1 65.211 93.466 71.568 90.00 92.37 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015335 0.000000 0.000634 0.00000 SCALE2 0.000000 0.010699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013985 0.00000