PDB Short entry for 6J0L HEADER SIGNALING PROTEIN 24-DEC-18 6J0L TITLE CRYSTAL STRUCTURE OF INTRACELLULAR B30.2 DOMAIN OF BTN3A3 MUTANT IN TITLE 2 COMPLEX WITH SULFATE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BUTYROPHILIN SUBFAMILY 3 MEMBER A3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 328-515; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BTN3A3, BTF3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS BUTYROPHILIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.Y.YANG,W.D.LIU,N.N.CAI,C.C.CHEN,R.T.GUO,Y.H.ZHANG REVDAT 4 22-NOV-23 6J0L 1 REMARK REVDAT 3 01-MAY-19 6J0L 1 JRNL REVDAT 2 10-APR-19 6J0L 1 JRNL REVDAT 1 03-APR-19 6J0L 0 JRNL AUTH Y.YANG,L.LI,L.YUAN,X.ZHOU,J.DUAN,H.XIAO,N.CAI,S.HAN,X.MA, JRNL AUTH 2 W.LIU,C.C.CHEN,L.WANG,X.LI,J.CHEN,N.KANG,J.CHEN,Z.SHEN, JRNL AUTH 3 S.R.MALWAL,W.LIU,Y.SHI,E.OLDFIELD,R.T.GUO,Y.ZHANG JRNL TITL A STRUCTURAL CHANGE IN BUTYROPHILIN UPON PHOSPHOANTIGEN JRNL TITL 2 BINDING UNDERLIES PHOSPHOANTIGEN-MEDIATED V GAMMA 9V DELTA 2 JRNL TITL 3 T CELL ACTIVATION. JRNL REF IMMUNITY V. 50 1043 2019 JRNL REFN ISSN 1097-4180 JRNL PMID 30902636 JRNL DOI 10.1016/J.IMMUNI.2019.02.016 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 27305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1443 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2038 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3062 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 222 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.99000 REMARK 3 B22 (A**2) : 1.35000 REMARK 3 B33 (A**2) : -0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.92000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.813 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3193 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2888 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4355 ; 1.327 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6679 ; 0.672 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 8.151 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;31.619 ;23.462 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 506 ;15.052 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.286 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 456 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3529 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 741 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1494 ; 3.628 ; 3.107 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1493 ; 3.629 ; 3.105 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1864 ; 4.669 ; 4.642 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1865 ; 4.668 ; 4.645 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1699 ; 5.310 ; 3.706 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1668 ; 5.126 ; 3.674 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2444 ; 7.112 ; 5.316 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3650 ; 8.851 ;26.948 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3556 ; 8.841 ;26.722 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6J0L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1300010266. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28751 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4N7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS ,AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.03350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.73500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.03350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.73500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -237.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -54.63128 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 139.47425 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 265 REMARK 465 GLY A 266 REMARK 465 SER A 267 REMARK 465 SER A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 SER A 275 REMARK 465 SER A 276 REMARK 465 GLY A 277 REMARK 465 LEU A 278 REMARK 465 VAL A 279 REMARK 465 PRO A 280 REMARK 465 ARG A 281 REMARK 465 GLY A 282 REMARK 465 SER A 283 REMARK 465 HIS A 284 REMARK 465 MET A 285 REMARK 465 GLU A 286 REMARK 465 ASN A 287 REMARK 465 LEU A 288 REMARK 465 TYR A 289 REMARK 465 PHE A 290 REMARK 465 GLN A 291 REMARK 465 GLY A 292 REMARK 465 ALA A 293 REMARK 465 GLY A 294 REMARK 465 ALA A 295 REMARK 465 GLY A 296 REMARK 465 ALA A 297 REMARK 465 ALA A 298 REMARK 465 MET B 265 REMARK 465 GLY B 266 REMARK 465 SER B 267 REMARK 465 SER B 268 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 465 SER B 275 REMARK 465 SER B 276 REMARK 465 GLY B 277 REMARK 465 LEU B 278 REMARK 465 VAL B 279 REMARK 465 PRO B 280 REMARK 465 ARG B 281 REMARK 465 GLY B 282 REMARK 465 SER B 283 REMARK 465 HIS B 284 REMARK 465 MET B 285 REMARK 465 GLU B 286 REMARK 465 ASN B 287 REMARK 465 LEU B 288 REMARK 465 TYR B 289 REMARK 465 PHE B 290 REMARK 465 GLN B 291 REMARK 465 GLY B 292 REMARK 465 ALA B 293 REMARK 465 GLY B 294 REMARK 465 ALA B 295 REMARK 465 GLY B 296 REMARK 465 ALA B 297 REMARK 465 PRO B 485 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 694 O HOH A 694 2557 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 301 -92.41 -109.68 REMARK 500 ALA A 305 -62.00 109.03 REMARK 500 ASN A 410 -3.94 -141.12 REMARK 500 PRO A 457 151.71 -48.49 REMARK 500 TRP B 377 149.36 -177.02 REMARK 500 ASN B 410 12.14 -144.55 REMARK 500 HIS B 458 62.22 29.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 704 DISTANCE = 6.72 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 504 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE INTRACELLULAR B30.2 DOMAIN OF BTN3A3 WAS REDESIGNED TO HAVE TEV REMARK 999 PROTEASE CLEAVAGE SITES AND BORDERING THE LINKER REGION(AGAGA). DBREF 6J0L A 298 485 UNP O00478 BT3A3_HUMAN 328 515 DBREF 6J0L B 298 485 UNP O00478 BT3A3_HUMAN 328 515 SEQADV 6J0L MET A 265 UNP O00478 EXPRESSION TAG SEQADV 6J0L GLY A 266 UNP O00478 EXPRESSION TAG SEQADV 6J0L SER A 267 UNP O00478 EXPRESSION TAG SEQADV 6J0L SER A 268 UNP O00478 EXPRESSION TAG SEQADV 6J0L HIS A 269 UNP O00478 EXPRESSION TAG SEQADV 6J0L HIS A 270 UNP O00478 EXPRESSION TAG SEQADV 6J0L HIS A 271 UNP O00478 EXPRESSION TAG SEQADV 6J0L HIS A 272 UNP O00478 EXPRESSION TAG SEQADV 6J0L HIS A 273 UNP O00478 EXPRESSION TAG SEQADV 6J0L HIS A 274 UNP O00478 EXPRESSION TAG SEQADV 6J0L SER A 275 UNP O00478 EXPRESSION TAG SEQADV 6J0L SER A 276 UNP O00478 EXPRESSION TAG SEQADV 6J0L GLY A 277 UNP O00478 EXPRESSION TAG SEQADV 6J0L LEU A 278 UNP O00478 EXPRESSION TAG SEQADV 6J0L VAL A 279 UNP O00478 EXPRESSION TAG SEQADV 6J0L PRO A 280 UNP O00478 EXPRESSION TAG SEQADV 6J0L ARG A 281 UNP O00478 EXPRESSION TAG SEQADV 6J0L GLY A 282 UNP O00478 EXPRESSION TAG SEQADV 6J0L SER A 283 UNP O00478 EXPRESSION TAG SEQADV 6J0L HIS A 284 UNP O00478 EXPRESSION TAG SEQADV 6J0L MET A 285 UNP O00478 EXPRESSION TAG SEQADV 6J0L GLU A 286 UNP O00478 EXPRESSION TAG SEQADV 6J0L ASN A 287 UNP O00478 EXPRESSION TAG SEQADV 6J0L LEU A 288 UNP O00478 EXPRESSION TAG SEQADV 6J0L TYR A 289 UNP O00478 EXPRESSION TAG SEQADV 6J0L PHE A 290 UNP O00478 EXPRESSION TAG SEQADV 6J0L GLN A 291 UNP O00478 EXPRESSION TAG SEQADV 6J0L GLY A 292 UNP O00478 EXPRESSION TAG SEQADV 6J0L ALA A 293 UNP O00478 EXPRESSION TAG SEQADV 6J0L GLY A 294 UNP O00478 EXPRESSION TAG SEQADV 6J0L ALA A 295 UNP O00478 EXPRESSION TAG SEQADV 6J0L GLY A 296 UNP O00478 EXPRESSION TAG SEQADV 6J0L ALA A 297 UNP O00478 EXPRESSION TAG SEQADV 6J0L HIS A 351 UNP O00478 ARG 381 ENGINEERED MUTATION SEQADV 6J0L MET B 265 UNP O00478 EXPRESSION TAG SEQADV 6J0L GLY B 266 UNP O00478 EXPRESSION TAG SEQADV 6J0L SER B 267 UNP O00478 EXPRESSION TAG SEQADV 6J0L SER B 268 UNP O00478 EXPRESSION TAG SEQADV 6J0L HIS B 269 UNP O00478 EXPRESSION TAG SEQADV 6J0L HIS B 270 UNP O00478 EXPRESSION TAG SEQADV 6J0L HIS B 271 UNP O00478 EXPRESSION TAG SEQADV 6J0L HIS B 272 UNP O00478 EXPRESSION TAG SEQADV 6J0L HIS B 273 UNP O00478 EXPRESSION TAG SEQADV 6J0L HIS B 274 UNP O00478 EXPRESSION TAG SEQADV 6J0L SER B 275 UNP O00478 EXPRESSION TAG SEQADV 6J0L SER B 276 UNP O00478 EXPRESSION TAG SEQADV 6J0L GLY B 277 UNP O00478 EXPRESSION TAG SEQADV 6J0L LEU B 278 UNP O00478 EXPRESSION TAG SEQADV 6J0L VAL B 279 UNP O00478 EXPRESSION TAG SEQADV 6J0L PRO B 280 UNP O00478 EXPRESSION TAG SEQADV 6J0L ARG B 281 UNP O00478 EXPRESSION TAG SEQADV 6J0L GLY B 282 UNP O00478 EXPRESSION TAG SEQADV 6J0L SER B 283 UNP O00478 EXPRESSION TAG SEQADV 6J0L HIS B 284 UNP O00478 EXPRESSION TAG SEQADV 6J0L MET B 285 UNP O00478 EXPRESSION TAG SEQADV 6J0L GLU B 286 UNP O00478 EXPRESSION TAG SEQADV 6J0L ASN B 287 UNP O00478 EXPRESSION TAG SEQADV 6J0L LEU B 288 UNP O00478 EXPRESSION TAG SEQADV 6J0L TYR B 289 UNP O00478 EXPRESSION TAG SEQADV 6J0L PHE B 290 UNP O00478 EXPRESSION TAG SEQADV 6J0L GLN B 291 UNP O00478 EXPRESSION TAG SEQADV 6J0L GLY B 292 UNP O00478 EXPRESSION TAG SEQADV 6J0L ALA B 293 UNP O00478 EXPRESSION TAG SEQADV 6J0L GLY B 294 UNP O00478 EXPRESSION TAG SEQADV 6J0L ALA B 295 UNP O00478 EXPRESSION TAG SEQADV 6J0L GLY B 296 UNP O00478 EXPRESSION TAG SEQADV 6J0L ALA B 297 UNP O00478 EXPRESSION TAG SEQADV 6J0L HIS B 351 UNP O00478 ARG 381 ENGINEERED MUTATION SEQRES 1 A 221 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 221 LEU VAL PRO ARG GLY SER HIS MET GLU ASN LEU TYR PHE SEQRES 3 A 221 GLN GLY ALA GLY ALA GLY ALA ALA TYR HIS GLU TRP LYS SEQRES 4 A 221 MET ALA LEU PHE LYS PRO ALA ASP VAL ILE LEU ASP PRO SEQRES 5 A 221 ASP THR ALA ASN ALA ILE LEU LEU VAL SER GLU ASP GLN SEQRES 6 A 221 ARG SER VAL GLN ARG ALA GLU GLU PRO ARG ASP LEU PRO SEQRES 7 A 221 ASP ASN PRO GLU ARG PHE GLU TRP HIS TYR CYS VAL LEU SEQRES 8 A 221 GLY CYS GLU ASN PHE THR SER GLY ARG HIS TYR TRP GLU SEQRES 9 A 221 VAL GLU VAL GLY ASP ARG LYS GLU TRP HIS ILE GLY VAL SEQRES 10 A 221 CYS SER LYS ASN VAL GLU ARG LYS LYS GLY TRP VAL LYS SEQRES 11 A 221 MET THR PRO GLU ASN GLY TYR TRP THR MET GLY LEU THR SEQRES 12 A 221 ASP GLY ASN LYS TYR ARG ALA LEU THR GLU PRO ARG THR SEQRES 13 A 221 ASN LEU LYS LEU PRO GLU PRO PRO ARG LYS VAL GLY ILE SEQRES 14 A 221 PHE LEU ASP TYR GLU THR GLY GLU ILE SER PHE TYR ASN SEQRES 15 A 221 ALA THR ASP GLY SER HIS ILE TYR THR PHE PRO HIS ALA SEQRES 16 A 221 SER PHE SER GLU PRO LEU TYR PRO VAL PHE ARG ILE LEU SEQRES 17 A 221 THR LEU GLU PRO THR ALA LEU THR ILE CYS PRO ILE PRO SEQRES 1 B 221 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 221 LEU VAL PRO ARG GLY SER HIS MET GLU ASN LEU TYR PHE SEQRES 3 B 221 GLN GLY ALA GLY ALA GLY ALA ALA TYR HIS GLU TRP LYS SEQRES 4 B 221 MET ALA LEU PHE LYS PRO ALA ASP VAL ILE LEU ASP PRO SEQRES 5 B 221 ASP THR ALA ASN ALA ILE LEU LEU VAL SER GLU ASP GLN SEQRES 6 B 221 ARG SER VAL GLN ARG ALA GLU GLU PRO ARG ASP LEU PRO SEQRES 7 B 221 ASP ASN PRO GLU ARG PHE GLU TRP HIS TYR CYS VAL LEU SEQRES 8 B 221 GLY CYS GLU ASN PHE THR SER GLY ARG HIS TYR TRP GLU SEQRES 9 B 221 VAL GLU VAL GLY ASP ARG LYS GLU TRP HIS ILE GLY VAL SEQRES 10 B 221 CYS SER LYS ASN VAL GLU ARG LYS LYS GLY TRP VAL LYS SEQRES 11 B 221 MET THR PRO GLU ASN GLY TYR TRP THR MET GLY LEU THR SEQRES 12 B 221 ASP GLY ASN LYS TYR ARG ALA LEU THR GLU PRO ARG THR SEQRES 13 B 221 ASN LEU LYS LEU PRO GLU PRO PRO ARG LYS VAL GLY ILE SEQRES 14 B 221 PHE LEU ASP TYR GLU THR GLY GLU ILE SER PHE TYR ASN SEQRES 15 B 221 ALA THR ASP GLY SER HIS ILE TYR THR PHE PRO HIS ALA SEQRES 16 B 221 SER PHE SER GLU PRO LEU TYR PRO VAL PHE ARG ILE LEU SEQRES 17 B 221 THR LEU GLU PRO THR ALA LEU THR ILE CYS PRO ILE PRO HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 B 501 5 HET SO4 B 502 5 HET SO4 B 503 5 HET SO4 B 504 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 8(O4 S 2-) FORMUL 11 HOH *222(H2 O) HELIX 1 AA1 TRP A 302 PHE A 307 1 6 HELIX 2 AA2 HIS B 300 PHE B 307 1 8 HELIX 3 AA3 ASP B 315 ALA B 319 5 5 HELIX 4 AA4 THR B 396 ASN B 399 5 4 SHEET 1 AA1 5 LYS A 308 PRO A 309 0 SHEET 2 AA1 5 ARG A 364 GLU A 370 1 O ARG A 364 N LYS A 308 SHEET 3 AA1 5 LEU A 479 ILE A 481 -1 O THR A 480 N GLU A 370 SHEET 4 AA1 5 SER A 331 ARG A 334 -1 N VAL A 332 O LEU A 479 SHEET 5 AA1 5 LEU A 323 VAL A 325 -1 N LEU A 324 O GLN A 333 SHEET 1 AA2 5 LYS A 308 PRO A 309 0 SHEET 2 AA2 5 ARG A 364 GLU A 370 1 O ARG A 364 N LYS A 308 SHEET 3 AA2 5 LYS A 430 ASP A 436 -1 O ILE A 433 N TRP A 367 SHEET 4 AA2 5 GLU A 441 ASN A 446 -1 O GLU A 441 N ASP A 436 SHEET 5 AA2 5 SER A 451 THR A 455 -1 O SER A 451 N ASN A 446 SHEET 1 AA3 6 CYS A 353 LEU A 355 0 SHEET 2 AA3 6 LEU A 465 ARG A 470 -1 O PHE A 469 N VAL A 354 SHEET 3 AA3 6 TRP A 377 SER A 383 -1 N HIS A 378 O ARG A 470 SHEET 4 AA3 6 TYR A 401 THR A 407 -1 O TRP A 402 N VAL A 381 SHEET 5 AA3 6 LYS A 411 ALA A 414 -1 O ARG A 413 N GLY A 405 SHEET 6 AA3 6 THR A 420 LEU A 422 -1 O THR A 420 N ALA A 414 SHEET 1 AA4 5 LYS B 308 PRO B 309 0 SHEET 2 AA4 5 ARG B 364 GLU B 370 1 O TYR B 366 N LYS B 308 SHEET 3 AA4 5 LEU B 479 ILE B 481 -1 O THR B 480 N GLU B 370 SHEET 4 AA4 5 SER B 331 ARG B 334 -1 N VAL B 332 O LEU B 479 SHEET 5 AA4 5 LEU B 323 VAL B 325 -1 N LEU B 324 O GLN B 333 SHEET 1 AA5 5 LYS B 308 PRO B 309 0 SHEET 2 AA5 5 ARG B 364 GLU B 370 1 O TYR B 366 N LYS B 308 SHEET 3 AA5 5 LYS B 430 ASP B 436 -1 O ILE B 433 N TRP B 367 SHEET 4 AA5 5 GLU B 441 ASN B 446 -1 O GLU B 441 N ASP B 436 SHEET 5 AA5 5 SER B 451 THR B 455 -1 O ILE B 453 N PHE B 444 SHEET 1 AA6 6 CYS B 353 LEU B 355 0 SHEET 2 AA6 6 LEU B 465 ARG B 470 -1 O PHE B 469 N VAL B 354 SHEET 3 AA6 6 TRP B 377 SER B 383 -1 N CYS B 382 O TYR B 466 SHEET 4 AA6 6 TYR B 401 THR B 407 -1 O TRP B 402 N VAL B 381 SHEET 5 AA6 6 LYS B 411 ALA B 414 -1 O LYS B 411 N THR B 407 SHEET 6 AA6 6 THR B 420 LEU B 422 -1 O THR B 420 N ALA B 414 CISPEP 1 GLU A 417 PRO A 418 0 -7.49 CISPEP 2 GLU B 417 PRO B 418 0 -1.26 SITE 1 AC1 8 LYS A 394 PRO A 418 ARG A 419 HOH A 602 SITE 2 AC1 8 HOH A 631 ARG B 413 ARG B 419 HOH B 647 SITE 1 AC2 7 ARG A 413 ARG A 419 ARG A 470 HOH A 614 SITE 2 AC2 7 HOH A 639 HOH A 647 LYS B 394 SITE 1 AC3 4 SER A 326 GLU A 327 HOH A 634 HOH A 667 SITE 1 AC4 2 ASN A 359 LYS A 384 SITE 1 AC5 6 HOH A 639 LYS B 394 ARG B 413 ARG B 419 SITE 2 AC5 6 ARG B 470 HOH B 609 SITE 1 AC6 4 LYS A 390 GLY A 391 ARG B 334 HOH B 659 SITE 1 AC7 3 ARG A 334 LYS B 390 GLY B 391 SITE 1 AC8 2 ASN B 359 LYS B 384 CRYST1 80.067 73.470 74.896 90.00 111.39 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012490 0.000000 0.004893 0.00000 SCALE2 0.000000 0.013611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014340 0.00000