PDB Short entry for 6J7B HEADER HYDROLASE 17-JAN-19 6J7B TITLE CRYSTAL STRUCTURE OF VASH1-SVBP IN COMPLEX WITH EPOY COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULINYL-TYR CARBOXYPEPTIDASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TUBULIN CARBOXYPEPTIDASE 1,TYROSINE CARBOXYPEPTIDASE 1,TTCP COMPND 5 1,VASOHIBIN-1; COMPND 6 EC: 3.4.17.17; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SMALL VASOHIBIN-BINDING PROTEIN; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: COILED COIL DOMAIN-CONTAINING PROTEIN 23; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VASH1, KIAA1036, VASH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SVBP, CCDC23; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CARBOXYPEPTIDASE, TUBULIN, MICROTUBULE, INHIBITOR, EPOY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.WANG,H.BAO,H.HUANG,B.WU REVDAT 3 22-NOV-23 6J7B 1 REMARK REVDAT 2 10-JUL-19 6J7B 1 JRNL REVDAT 1 19-JUN-19 6J7B 0 JRNL AUTH S.LIAO,G.RAJENDRAPRASAD,N.WANG,S.EIBES,J.GAO,H.YU,G.WU,X.TU, JRNL AUTH 2 H.HUANG,M.BARISIC,C.XU JRNL TITL MOLECULAR BASIS OF VASOHIBINS-MEDIATED DETYROSINATION AND JRNL TITL 2 ITS IMPACT ON SPINDLE FUNCTION AND MITOSIS. JRNL REF CELL RES. V. 29 533 2019 JRNL REFN ISSN 1001-0602 JRNL PMID 31171830 JRNL DOI 10.1038/S41422-019-0187-Y REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 52398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5605 - 4.2394 1.00 2994 160 0.1738 0.1751 REMARK 3 2 4.2394 - 3.3652 1.00 2818 163 0.1552 0.1766 REMARK 3 3 3.3652 - 2.9399 1.00 2814 138 0.1680 0.2101 REMARK 3 4 2.9399 - 2.6711 1.00 2804 151 0.1720 0.1978 REMARK 3 5 2.6711 - 2.4797 1.00 2743 152 0.1684 0.1659 REMARK 3 6 2.4797 - 2.3335 1.00 2772 139 0.1648 0.1675 REMARK 3 7 2.3335 - 2.2166 0.99 2738 127 0.1869 0.2342 REMARK 3 8 2.2166 - 2.1201 1.00 2786 146 0.1674 0.1753 REMARK 3 9 2.1201 - 2.0385 1.00 2718 163 0.1683 0.1887 REMARK 3 10 2.0385 - 1.9682 1.00 2740 147 0.1761 0.1970 REMARK 3 11 1.9682 - 1.9066 1.00 2764 118 0.2104 0.2371 REMARK 3 12 1.9066 - 1.8521 1.00 2726 143 0.2171 0.2450 REMARK 3 13 1.8521 - 1.8034 1.00 2761 139 0.2023 0.2096 REMARK 3 14 1.8034 - 1.7594 1.00 2723 153 0.2292 0.2619 REMARK 3 15 1.7594 - 1.7194 1.00 2707 145 0.2290 0.3160 REMARK 3 16 1.7194 - 1.6828 1.00 2745 138 0.2336 0.2668 REMARK 3 17 1.6828 - 1.6491 1.00 2713 107 0.2330 0.2652 REMARK 3 18 1.6491 - 1.6180 1.00 2743 160 0.2414 0.2723 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2373 REMARK 3 ANGLE : 0.904 3201 REMARK 3 CHIRALITY : 0.053 342 REMARK 3 PLANARITY : 0.005 413 REMARK 3 DIHEDRAL : 14.057 1450 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.7375 62.6889 31.0957 REMARK 3 T TENSOR REMARK 3 T11: 0.2959 T22: 0.3195 REMARK 3 T33: 0.2625 T12: 0.0228 REMARK 3 T13: -0.0565 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 5.5191 L22: 5.5972 REMARK 3 L33: 4.5194 L12: 4.6281 REMARK 3 L13: 4.2328 L23: 4.9732 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: -0.6578 S13: -0.7486 REMARK 3 S21: 0.4296 S22: 0.0880 S23: -0.6773 REMARK 3 S31: 0.0218 S32: 0.4661 S33: -0.4315 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.4117 63.6713 37.5449 REMARK 3 T TENSOR REMARK 3 T11: 0.3039 T22: 0.3925 REMARK 3 T33: 0.2127 T12: -0.0401 REMARK 3 T13: -0.0280 T23: 0.1367 REMARK 3 L TENSOR REMARK 3 L11: 3.9093 L22: 2.2476 REMARK 3 L33: 4.9589 L12: -0.8889 REMARK 3 L13: 0.2456 L23: 0.2898 REMARK 3 S TENSOR REMARK 3 S11: -0.1509 S12: -0.9234 S13: -0.3967 REMARK 3 S21: 0.6794 S22: 0.0125 S23: -0.2024 REMARK 3 S31: 0.0331 S32: 0.4459 S33: -0.0612 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6669 68.6476 33.6256 REMARK 3 T TENSOR REMARK 3 T11: 0.2400 T22: 0.3125 REMARK 3 T33: 0.2682 T12: -0.0098 REMARK 3 T13: 0.0589 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 3.9747 L22: 3.0275 REMARK 3 L33: 0.7258 L12: 0.4342 REMARK 3 L13: 0.3613 L23: -0.2010 REMARK 3 S TENSOR REMARK 3 S11: 0.1538 S12: -0.3467 S13: 0.2165 REMARK 3 S21: 0.3889 S22: -0.0640 S23: 0.2870 REMARK 3 S31: 0.0074 S32: -0.3036 S33: -0.0266 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3738 76.8438 7.5652 REMARK 3 T TENSOR REMARK 3 T11: 0.2027 T22: 0.1834 REMARK 3 T33: 0.1668 T12: 0.0278 REMARK 3 T13: -0.0180 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.4374 L22: 1.1251 REMARK 3 L33: 4.1358 L12: 0.6844 REMARK 3 L13: -2.3081 L23: -1.2516 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: 0.1576 S13: 0.0489 REMARK 3 S21: -0.1659 S22: 0.0476 S23: 0.0465 REMARK 3 S31: -0.0145 S32: -0.3364 S33: -0.0589 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.3612 66.7573 21.7047 REMARK 3 T TENSOR REMARK 3 T11: 0.1689 T22: 0.1426 REMARK 3 T33: 0.1622 T12: -0.0057 REMARK 3 T13: -0.0071 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 2.4420 L22: 0.7276 REMARK 3 L33: 1.2740 L12: -0.5881 REMARK 3 L13: -0.7808 L23: 0.2863 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: -0.1518 S13: -0.0926 REMARK 3 S21: 0.0530 S22: 0.0018 S23: -0.1003 REMARK 3 S31: 0.1823 S32: 0.0683 S33: 0.0118 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.3441 75.6789 15.9218 REMARK 3 T TENSOR REMARK 3 T11: 0.1368 T22: 0.1207 REMARK 3 T33: 0.1460 T12: 0.0168 REMARK 3 T13: -0.0103 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.1148 L22: 1.3980 REMARK 3 L33: 1.9324 L12: -0.0626 REMARK 3 L13: 0.1619 L23: 0.6021 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: -0.0489 S13: 0.0001 REMARK 3 S21: 0.0211 S22: 0.0321 S23: -0.0199 REMARK 3 S31: -0.0128 S32: -0.0064 S33: -0.0260 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.5856 80.0986 24.4562 REMARK 3 T TENSOR REMARK 3 T11: 0.1834 T22: 0.1958 REMARK 3 T33: 0.1544 T12: 0.0322 REMARK 3 T13: -0.0116 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.0604 L22: 1.7355 REMARK 3 L33: 2.2223 L12: -0.5033 REMARK 3 L13: 0.0967 L23: 1.6443 REMARK 3 S TENSOR REMARK 3 S11: -0.0670 S12: -0.2542 S13: 0.0403 REMARK 3 S21: 0.3639 S22: 0.2136 S23: -0.0111 REMARK 3 S31: 0.1019 S32: 0.0492 S33: -0.0624 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 212 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.4508 83.7195 18.0691 REMARK 3 T TENSOR REMARK 3 T11: 0.2186 T22: 0.1768 REMARK 3 T33: 0.1763 T12: 0.0120 REMARK 3 T13: -0.0061 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 5.6479 L22: 3.0184 REMARK 3 L33: 5.1084 L12: 1.0940 REMARK 3 L13: -2.6488 L23: -0.5069 REMARK 3 S TENSOR REMARK 3 S11: 0.3239 S12: -0.3094 S13: 0.2861 REMARK 3 S21: 0.2020 S22: -0.0604 S23: 0.2298 REMARK 3 S31: -0.6664 S32: -0.1129 S33: -0.3252 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 227 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.2613 89.0673 18.3843 REMARK 3 T TENSOR REMARK 3 T11: 0.2029 T22: 0.1259 REMARK 3 T33: 0.1928 T12: 0.0097 REMARK 3 T13: -0.0056 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.7680 L22: 1.4892 REMARK 3 L33: 3.1535 L12: -0.5486 REMARK 3 L13: -0.2136 L23: 1.3804 REMARK 3 S TENSOR REMARK 3 S11: -0.0417 S12: -0.0322 S13: 0.2790 REMARK 3 S21: -0.0651 S22: 0.0865 S23: 0.0087 REMARK 3 S31: -0.2715 S32: -0.0403 S33: -0.0567 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.8169 73.9019 18.4747 REMARK 3 T TENSOR REMARK 3 T11: 0.1415 T22: 0.1647 REMARK 3 T33: 0.1862 T12: 0.0252 REMARK 3 T13: -0.0240 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.0240 L22: 1.7734 REMARK 3 L33: 1.8569 L12: -0.0130 REMARK 3 L13: 0.1182 L23: 0.5923 REMARK 3 S TENSOR REMARK 3 S11: 0.0453 S12: -0.0853 S13: -0.0691 REMARK 3 S21: 0.0104 S22: 0.1544 S23: -0.2641 REMARK 3 S31: 0.0355 S32: 0.2164 S33: -0.2507 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 278 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 74.4562 84.5953 18.3017 REMARK 3 T TENSOR REMARK 3 T11: 0.1292 T22: 0.3060 REMARK 3 T33: 0.3225 T12: -0.0376 REMARK 3 T13: -0.0192 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 3.9735 L22: 5.0045 REMARK 3 L33: 6.2259 L12: 0.3867 REMARK 3 L13: 0.4738 L23: 0.6571 REMARK 3 S TENSOR REMARK 3 S11: -0.1399 S12: 0.4472 S13: 0.3459 REMARK 3 S21: -0.1352 S22: 0.0712 S23: -0.5650 REMARK 3 S31: -0.2068 S32: 0.9878 S33: -0.0456 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9880 63.9170 25.5342 REMARK 3 T TENSOR REMARK 3 T11: 0.1864 T22: 0.1982 REMARK 3 T33: 0.1677 T12: -0.0347 REMARK 3 T13: 0.0283 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 3.8059 L22: 3.9651 REMARK 3 L33: 3.8248 L12: -0.0468 REMARK 3 L13: -0.5424 L23: 1.0991 REMARK 3 S TENSOR REMARK 3 S11: -0.0847 S12: -0.0047 S13: -0.3405 REMARK 3 S21: -0.2740 S22: -0.0274 S23: 0.0745 REMARK 3 S31: 0.2306 S32: -0.1580 S33: 0.0055 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6J7B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52501 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 70.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.32600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6J4O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%PEG6000, 1M LITHIUM CHLORIDE, 0.1M REMARK 280 MES PH6.0, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.06500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.06500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1280 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 306 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 PRO B 3 REMARK 465 PRO B 4 REMARK 465 ALA B 5 REMARK 465 ARG B 6 REMARK 465 LYS B 7 REMARK 465 GLU B 8 REMARK 465 LYS B 9 REMARK 465 THR B 10 REMARK 465 LYS B 11 REMARK 465 VAL B 12 REMARK 465 LYS B 13 REMARK 465 GLU B 14 REMARK 465 SER B 15 REMARK 465 VAL B 16 REMARK 465 SER B 17 REMARK 465 ARG B 18 REMARK 465 VAL B 19 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 GLN B 52 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1231 O HOH A 1273 1.83 REMARK 500 OE2 GLU B 30 O HOH B 101 1.85 REMARK 500 O HOH A 1281 O HOH A 1318 1.92 REMARK 500 O HOH A 1021 O HOH A 1236 1.93 REMARK 500 O HOH A 1088 O HOH A 1275 1.97 REMARK 500 O HOH A 1044 O HOH A 1251 1.99 REMARK 500 O HOH A 1266 O HOH A 1279 2.02 REMARK 500 O ILE A 305 O HOH A 1001 2.04 REMARK 500 O HOH A 1237 O HOH A 1308 2.04 REMARK 500 O HOH A 1287 O HOH A 1307 2.06 REMARK 500 OE2 GLU A 238 O HOH A 1002 2.06 REMARK 500 O HOH A 1251 O HOH B 129 2.08 REMARK 500 O HOH B 126 O HOH B 141 2.08 REMARK 500 O HOH A 1332 O HOH A 1336 2.08 REMARK 500 O HOH A 1255 O HOH A 1331 2.08 REMARK 500 O HOH A 1329 O HOH A 1333 2.09 REMARK 500 O HOH A 1251 O HOH B 117 2.11 REMARK 500 O HOH A 1143 O HOH A 1250 2.12 REMARK 500 O HOH A 1022 O HOH A 1025 2.12 REMARK 500 OE1 GLU A 71 O HOH A 1003 2.14 REMARK 500 OE1 GLU A 71 O HOH A 1004 2.16 REMARK 500 O HOH A 1238 O HOH A 1302 2.17 REMARK 500 O HOH A 1175 O HOH A 1308 2.19 REMARK 500 OE1 GLN A 93 O HOH A 1005 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1170 O HOH A 1246 3745 1.92 REMARK 500 O HOH A 1181 O HOH A 1221 1655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 133 143.01 81.54 REMARK 500 LYS A 168 -164.46 -116.11 REMARK 500 MET A 227 -89.17 -137.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BJL A 900 DBREF 6J7B A 57 306 UNP Q7L8A9 VASH1_HUMAN 57 306 DBREF 6J7B B 1 52 UNP Q8N300 SVBP_HUMAN 1 52 SEQRES 1 A 250 GLY VAL PRO PHE PHE VAL ASN ARG GLY GLY LEU PRO VAL SEQRES 2 A 250 ASP GLU ALA THR TRP GLU ARG MET TRP LYS HIS VAL ALA SEQRES 3 A 250 LYS ILE HIS PRO ASP GLY GLU LYS VAL ALA GLN ARG ILE SEQRES 4 A 250 ARG GLY ALA THR ASP LEU PRO LYS ILE PRO ILE PRO SER SEQRES 5 A 250 VAL PRO THR PHE GLN PRO SER THR PRO VAL PRO GLU ARG SEQRES 6 A 250 LEU GLU ALA VAL GLN ARG TYR ILE ARG GLU LEU GLN TYR SEQRES 7 A 250 ASN HIS THR GLY THR GLN PHE PHE GLU ILE LYS LYS SER SEQRES 8 A 250 ARG PRO LEU THR GLY LEU MET ASP LEU ALA LYS GLU MET SEQRES 9 A 250 THR LYS GLU ALA LEU PRO ILE LYS CYS LEU GLU ALA VAL SEQRES 10 A 250 ILE LEU GLY ILE TYR LEU THR ASN SER MET PRO THR LEU SEQRES 11 A 250 GLU ARG PHE PRO ILE SER PHE LYS THR TYR PHE SER GLY SEQRES 12 A 250 ASN TYR PHE ARG HIS ILE VAL LEU GLY VAL ASN PHE ALA SEQRES 13 A 250 GLY ARG TYR GLY ALA LEU GLY MET SER ARG ARG GLU ASP SEQRES 14 A 250 LEU MET TYR LYS PRO PRO ALA PHE ARG THR LEU SER GLU SEQRES 15 A 250 LEU VAL LEU ASP PHE GLU ALA ALA TYR GLY ARG CYS TRP SEQRES 16 A 250 HIS VAL LEU LYS LYS VAL LYS LEU GLY GLN SER VAL SER SEQRES 17 A 250 HIS ASP PRO HIS SER VAL GLU GLN ILE GLU TRP LYS HIS SEQRES 18 A 250 SER VAL LEU ASP VAL GLU ARG LEU GLY ARG ASP ASP PHE SEQRES 19 A 250 ARG LYS GLU LEU GLU ARG HIS ALA ARG ASP MET ARG LEU SEQRES 20 A 250 LYS ILE GLY SEQRES 1 B 52 MET ASP PRO PRO ALA ARG LYS GLU LYS THR LYS VAL LYS SEQRES 2 B 52 GLU SER VAL SER ARG VAL GLU LYS ALA LYS GLN LYS SER SEQRES 3 B 52 ALA GLN GLN GLU LEU LYS GLN ARG GLN ARG ALA GLU ILE SEQRES 4 B 52 TYR ALA LEU ASN ARG VAL MET THR GLU LEU GLU GLN GLN HET BJL A 900 23 HETNAM BJL N-[(3R)-4-ETHOXY-3-HYDROXY-4-OXOBUTANOYL]-L-TYROSINE FORMUL 3 BJL C15 H19 N O7 FORMUL 4 HOH *382(H2 O) HELIX 1 AA1 ASP A 70 HIS A 85 1 16 HELIX 2 AA2 ASP A 87 ARG A 96 1 10 HELIX 3 AA3 PRO A 117 GLN A 133 1 17 HELIX 4 AA4 PRO A 149 ALA A 164 1 16 HELIX 5 AA5 LYS A 168 LEU A 179 1 12 HELIX 6 AA6 ARG A 223 MET A 227 5 5 HELIX 7 AA7 THR A 235 CYS A 250 1 16 HELIX 8 AA8 VAL A 282 LYS A 304 1 23 HELIX 9 AA9 LYS B 21 GLN B 52 1 32 SHEET 1 AA1 2 PHE A 61 VAL A 62 0 SHEET 2 AA1 2 THR A 139 GLN A 140 1 O GLN A 140 N PHE A 61 SHEET 1 AA2 6 LYS A 229 PHE A 233 0 SHEET 2 AA2 6 ARG A 214 LEU A 218 -1 N TYR A 215 O PHE A 233 SHEET 3 AA2 6 ASN A 200 PHE A 211 -1 N LEU A 207 O LEU A 218 SHEET 4 AA2 6 LEU A 186 PHE A 197 -1 N PHE A 193 O HIS A 204 SHEET 5 AA2 6 VAL A 253 LEU A 259 -1 O LYS A 258 N SER A 192 SHEET 6 AA2 6 SER A 278 ASP A 281 -1 O LEU A 280 N VAL A 257 LINK SG CYS A 169 C15 BJL A 900 1555 1555 1.79 CISPEP 1 LEU A 67 PRO A 68 0 -1.33 SITE 1 AC1 13 PHE A 60 TYR A 134 LYS A 168 CYS A 169 SITE 2 AC1 13 LEU A 170 PHE A 202 ARG A 203 HIS A 204 SITE 3 AC1 13 SER A 221 ARG A 222 HOH A1007 HOH A1012 SITE 4 AC1 13 HOH A1147 CRYST1 44.310 70.920 128.130 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022568 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007805 0.00000