PDB Short entry for 6KPF HEADER MEMBRANE PROTEIN 15-AUG-19 6KPF TITLE CRYO-EM STRUCTURE OF A CLASS A GPCR WITH G PROTEIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) SUBUNIT ALPHA-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADENYLATE CYCLASE-INHIBITING G ALPHA PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT COMPND 8 BETA-1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: TRANSDUCIN BETA CHAIN 1; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(O) SUBUNIT COMPND 14 GAMMA-2; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: G GAMMA-I; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: CANNABINOID RECEPTOR 2; COMPND 20 CHAIN: R; COMPND 21 SYNONYM: HCB2,CX5; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 5; COMPND 24 MOLECULE: SCFV16; COMPND 25 CHAIN: S; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GNAI1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: GNB1; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: GNG2; SOURCE 20 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: CNR2, CB2A, CB2B; SOURCE 27 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 29 MOL_ID: 5; SOURCE 30 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 31 ORGANISM_TAXID: 9606; SOURCE 32 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 33 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS GPCR, GI PROTEIN, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR X.T.LI,T.HUA,L.J.WU,A.MAKRIYANNIS,L.SHEN,Y.X.WANG,Z.J.LIU REVDAT 3 27-APR-22 6KPF 1 COMPND SOURCE REMARK HET REVDAT 3 2 1 HETNAM FORMUL ATOM REVDAT 2 11-MAR-20 6KPF 1 JRNL REVDAT 1 12-FEB-20 6KPF 0 JRNL AUTH T.HUA,X.LI,L.WU,C.ILIOPOULOS-TSOUTSOUVAS,Y.WANG,M.WU,L.SHEN, JRNL AUTH 2 C.A.JOHNSTON,S.P.NIKAS,F.SONG,X.SONG,S.YUAN,Q.SUN,Y.WU, JRNL AUTH 3 S.JIANG,T.W.GRIM,O.BENCHAMA,E.L.STAHL,N.ZVONOK,S.ZHAO, JRNL AUTH 4 L.M.BOHN,A.MAKRIYANNIS,Z.J.LIU JRNL TITL ACTIVATION AND SIGNALING MECHANISM REVEALED BY CANNABINOID JRNL TITL 2 RECEPTOR-GICOMPLEX STRUCTURES. JRNL REF CELL V. 180 655 2020 JRNL REFN ISSN 1097-4172 JRNL PMID 32004463 JRNL DOI 10.1016/J.CELL.2020.01.008 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, SERIALEM, GCTF, UCSF CHIMERA, REMARK 3 RELION, RELION, RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 6N4B REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : CC_MASK REMARK 3 OVERALL ANISOTROPIC B VALUE : 45.800 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.900 REMARK 3 NUMBER OF PARTICLES : 960302 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6KPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300013421. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : GPCR-G PROTEIN COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 4496 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 133.30 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 130000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, R, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ILE A 55 REMARK 465 ILE A 56 REMARK 465 HIS A 57 REMARK 465 GLU A 58 REMARK 465 ALA A 59 REMARK 465 GLY A 60 REMARK 465 TYR A 61 REMARK 465 SER A 62 REMARK 465 GLU A 63 REMARK 465 GLU A 64 REMARK 465 GLU A 65 REMARK 465 CYS A 66 REMARK 465 LYS A 67 REMARK 465 GLN A 68 REMARK 465 TYR A 69 REMARK 465 LYS A 70 REMARK 465 ALA A 71 REMARK 465 VAL A 72 REMARK 465 VAL A 73 REMARK 465 TYR A 74 REMARK 465 SER A 75 REMARK 465 ASN A 76 REMARK 465 THR A 77 REMARK 465 ILE A 78 REMARK 465 GLN A 79 REMARK 465 SER A 80 REMARK 465 ILE A 81 REMARK 465 ILE A 82 REMARK 465 ALA A 83 REMARK 465 ILE A 84 REMARK 465 ILE A 85 REMARK 465 ARG A 86 REMARK 465 ALA A 87 REMARK 465 MET A 88 REMARK 465 GLY A 89 REMARK 465 ARG A 90 REMARK 465 LEU A 91 REMARK 465 LYS A 92 REMARK 465 ILE A 93 REMARK 465 ASP A 94 REMARK 465 PHE A 95 REMARK 465 GLY A 96 REMARK 465 ASP A 97 REMARK 465 SER A 98 REMARK 465 ALA A 99 REMARK 465 ARG A 100 REMARK 465 ALA A 101 REMARK 465 ASP A 102 REMARK 465 ASP A 103 REMARK 465 ALA A 104 REMARK 465 ARG A 105 REMARK 465 GLN A 106 REMARK 465 LEU A 107 REMARK 465 PHE A 108 REMARK 465 VAL A 109 REMARK 465 LEU A 110 REMARK 465 ALA A 111 REMARK 465 GLY A 112 REMARK 465 ALA A 113 REMARK 465 ALA A 114 REMARK 465 GLU A 115 REMARK 465 GLU A 116 REMARK 465 GLY A 117 REMARK 465 PHE A 118 REMARK 465 MET A 119 REMARK 465 THR A 120 REMARK 465 ALA A 121 REMARK 465 GLU A 122 REMARK 465 LEU A 123 REMARK 465 ALA A 124 REMARK 465 GLY A 125 REMARK 465 VAL A 126 REMARK 465 ILE A 127 REMARK 465 LYS A 128 REMARK 465 ARG A 129 REMARK 465 LEU A 130 REMARK 465 TRP A 131 REMARK 465 LYS A 132 REMARK 465 ASP A 133 REMARK 465 SER A 134 REMARK 465 GLY A 135 REMARK 465 VAL A 136 REMARK 465 GLN A 137 REMARK 465 ALA A 138 REMARK 465 CYS A 139 REMARK 465 PHE A 140 REMARK 465 ASN A 141 REMARK 465 ARG A 142 REMARK 465 SER A 143 REMARK 465 ARG A 144 REMARK 465 GLU A 145 REMARK 465 TYR A 146 REMARK 465 GLN A 147 REMARK 465 LEU A 148 REMARK 465 ASN A 149 REMARK 465 ASP A 150 REMARK 465 SER A 151 REMARK 465 ALA A 152 REMARK 465 ALA A 153 REMARK 465 TYR A 154 REMARK 465 TYR A 155 REMARK 465 LEU A 156 REMARK 465 ASN A 157 REMARK 465 ASP A 158 REMARK 465 LEU A 159 REMARK 465 ASP A 160 REMARK 465 ARG A 161 REMARK 465 ILE A 162 REMARK 465 ALA A 163 REMARK 465 GLN A 164 REMARK 465 PRO A 165 REMARK 465 ASN A 166 REMARK 465 TYR A 167 REMARK 465 ILE A 168 REMARK 465 PRO A 169 REMARK 465 THR A 170 REMARK 465 GLN A 171 REMARK 465 GLN A 172 REMARK 465 ASP A 173 REMARK 465 VAL A 174 REMARK 465 LEU A 175 REMARK 465 ARG A 176 REMARK 465 THR A 177 REMARK 465 ARG A 178 REMARK 465 VAL A 179 REMARK 465 LYS A 180 REMARK 465 THR A 181 REMARK 465 VAL A 233 REMARK 465 LEU A 234 REMARK 465 ALA A 235 REMARK 465 GLU A 236 REMARK 465 ASP A 237 REMARK 465 GLU A 238 REMARK 465 GLU A 239 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 SER C 3 REMARK 465 ASN C 4 REMARK 465 ASN C 5 REMARK 465 THR C 6 REMARK 465 LYS C 64 REMARK 465 LYS C 65 REMARK 465 PHE C 66 REMARK 465 PHE C 67 REMARK 465 CYS C 68 REMARK 465 ALA C 69 REMARK 465 ILE C 70 REMARK 465 LEU C 71 REMARK 465 MET R 1 REMARK 465 GLU R 2 REMARK 465 GLU R 3 REMARK 465 CYS R 4 REMARK 465 TRP R 5 REMARK 465 VAL R 6 REMARK 465 THR R 7 REMARK 465 GLU R 8 REMARK 465 ILE R 9 REMARK 465 ALA R 10 REMARK 465 ASN R 11 REMARK 465 GLY R 12 REMARK 465 SER R 13 REMARK 465 LYS R 14 REMARK 465 ASP R 15 REMARK 465 GLY R 16 REMARK 465 LEU R 17 REMARK 465 ASP R 18 REMARK 465 SER R 19 REMARK 465 ASN R 20 REMARK 465 ASP R 228 REMARK 465 ARG R 229 REMARK 465 GLN R 230 REMARK 465 VAL R 231 REMARK 465 PRO R 232 REMARK 465 GLY R 233 REMARK 465 MET R 234 REMARK 465 ALA R 235 REMARK 465 ARG R 236 REMARK 465 CYS R 320 REMARK 465 VAL R 321 REMARK 465 ARG R 322 REMARK 465 GLY R 323 REMARK 465 LEU R 324 REMARK 465 GLY R 325 REMARK 465 SER R 326 REMARK 465 GLU R 327 REMARK 465 ALA R 328 REMARK 465 LYS R 329 REMARK 465 GLU R 330 REMARK 465 GLU R 331 REMARK 465 ALA R 332 REMARK 465 PRO R 333 REMARK 465 ARG R 334 REMARK 465 SER R 335 REMARK 465 SER R 336 REMARK 465 VAL R 337 REMARK 465 THR R 338 REMARK 465 GLU R 339 REMARK 465 THR R 340 REMARK 465 GLU R 341 REMARK 465 ALA R 342 REMARK 465 ASP R 343 REMARK 465 GLY R 344 REMARK 465 LYS R 345 REMARK 465 ILE R 346 REMARK 465 THR R 347 REMARK 465 PRO R 348 REMARK 465 TRP R 349 REMARK 465 PRO R 350 REMARK 465 ASP R 351 REMARK 465 SER R 352 REMARK 465 ARG R 353 REMARK 465 ASP R 354 REMARK 465 LEU R 355 REMARK 465 ASP R 356 REMARK 465 LEU R 357 REMARK 465 SER R 358 REMARK 465 ASP R 359 REMARK 465 CYS R 360 REMARK 465 ASP S 1 REMARK 465 GLY S 121A REMARK 465 GLY S 121B REMARK 465 GLY S 121C REMARK 465 GLY S 121D REMARK 465 SER S 121E REMARK 465 GLY S 121F REMARK 465 GLY S 121G REMARK 465 GLY S 121H REMARK 465 GLY S 121I REMARK 465 SER S 121J REMARK 465 GLY S 121K REMARK 465 GLY S 121L REMARK 465 GLY S 121M REMARK 465 GLY S 121N REMARK 465 LYS S 236 REMARK 465 ALA S 237 REMARK 465 ALA S 238 REMARK 465 ALA S 239 REMARK 465 HIS S 240 REMARK 465 HIS S 241 REMARK 465 HIS S 242 REMARK 465 HIS S 243 REMARK 465 HIS S 244 REMARK 465 HIS S 245 REMARK 465 HIS S 246 REMARK 465 HIS S 247 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 ASP A 193 CG OD1 OD2 REMARK 470 ARG A 205 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 MET A 240 CG SD CE REMARK 470 ASP A 272 CG OD1 OD2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 THR A 295 OG1 CG2 REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 ASP A 350 CG OD1 OD2 REMARK 470 ASN B 36 CG OD1 ND2 REMARK 470 GLU B 215 CG CD OE1 OE2 REMARK 470 ASN B 268 CG OD1 ND2 REMARK 470 SER B 331 OG REMARK 470 ARG R 177 CG CD NE CZ NH1 NH2 REMARK 470 GLU S 42 CG CD OE1 OE2 REMARK 470 ASP S 62 CG OD1 OD2 REMARK 470 LYS S 76 CG CD CE NZ REMARK 470 GLU S 89 CG CD OE1 OE2 REMARK 470 SER S 121 OG REMARK 470 SER S 124 OG REMARK 470 THR S 132 OG1 CG2 REMARK 470 GLU S 141 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS R 179 CA - CB - SG ANGL. DEV. = 12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 4 14.27 52.99 REMARK 500 SER A 44 65.95 -100.39 REMARK 500 ASN A 255 30.08 -95.53 REMARK 500 ARG A 313 52.23 -95.33 REMARK 500 ASN B 36 52.80 -95.47 REMARK 500 GLU B 130 -5.78 65.89 REMARK 500 SER B 281 -4.81 66.77 REMARK 500 ASP B 291 32.43 -90.25 REMARK 500 LYS R 23 83.99 -69.81 REMARK 500 PRO R 178 -77.64 -64.36 REMARK 500 CYS R 179 179.22 167.17 REMARK 500 LEU R 185 64.97 61.31 REMARK 500 PRO R 260 4.54 -69.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO R 178 CYS R 179 124.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E3R R 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-0744 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF A CLASS A GPCR WITH G PROTEIN COMPLEX DBREF 6KPF A 1 354 UNP P63096 GNAI1_HUMAN 1 354 DBREF 6KPF B 1 340 UNP P62873 GBB1_HUMAN 1 340 DBREF 6KPF C 1 71 UNP P59768 GBG2_HUMAN 1 71 DBREF 6KPF R 1 360 UNP P34972 CNR2_HUMAN 1 360 DBREF 6KPF S 1 247 PDB 6KPF 6KPF 1 247 SEQRES 1 A 354 MET GLY CYS THR LEU SER ALA GLU ASP LYS ALA ALA VAL SEQRES 2 A 354 GLU ARG SER LYS MET ILE ASP ARG ASN LEU ARG GLU ASP SEQRES 3 A 354 GLY GLU LYS ALA ALA ARG GLU VAL LYS LEU LEU LEU LEU SEQRES 4 A 354 GLY ALA GLY GLU SER GLY LYS SER THR ILE VAL LYS GLN SEQRES 5 A 354 MET LYS ILE ILE HIS GLU ALA GLY TYR SER GLU GLU GLU SEQRES 6 A 354 CYS LYS GLN TYR LYS ALA VAL VAL TYR SER ASN THR ILE SEQRES 7 A 354 GLN SER ILE ILE ALA ILE ILE ARG ALA MET GLY ARG LEU SEQRES 8 A 354 LYS ILE ASP PHE GLY ASP SER ALA ARG ALA ASP ASP ALA SEQRES 9 A 354 ARG GLN LEU PHE VAL LEU ALA GLY ALA ALA GLU GLU GLY SEQRES 10 A 354 PHE MET THR ALA GLU LEU ALA GLY VAL ILE LYS ARG LEU SEQRES 11 A 354 TRP LYS ASP SER GLY VAL GLN ALA CYS PHE ASN ARG SER SEQRES 12 A 354 ARG GLU TYR GLN LEU ASN ASP SER ALA ALA TYR TYR LEU SEQRES 13 A 354 ASN ASP LEU ASP ARG ILE ALA GLN PRO ASN TYR ILE PRO SEQRES 14 A 354 THR GLN GLN ASP VAL LEU ARG THR ARG VAL LYS THR THR SEQRES 15 A 354 GLY ILE VAL GLU THR HIS PHE THR PHE LYS ASP LEU HIS SEQRES 16 A 354 PHE LYS MET PHE ASP VAL GLY GLY GLN ARG SER GLU ARG SEQRES 17 A 354 LYS LYS TRP ILE HIS CYS PHE GLU GLY VAL THR ALA ILE SEQRES 18 A 354 ILE PHE CYS VAL ALA LEU SER ASP TYR ASP LEU VAL LEU SEQRES 19 A 354 ALA GLU ASP GLU GLU MET ASN ARG MET HIS GLU SER MET SEQRES 20 A 354 LYS LEU PHE ASP SER ILE CYS ASN ASN LYS TRP PHE THR SEQRES 21 A 354 ASP THR SER ILE ILE LEU PHE LEU ASN LYS LYS ASP LEU SEQRES 22 A 354 PHE GLU GLU LYS ILE LYS LYS SER PRO LEU THR ILE CYS SEQRES 23 A 354 TYR PRO GLU TYR ALA GLY SER ASN THR TYR GLU GLU ALA SEQRES 24 A 354 ALA ALA TYR ILE GLN CYS GLN PHE GLU ASP LEU ASN LYS SEQRES 25 A 354 ARG LYS ASP THR LYS GLU ILE TYR THR HIS PHE THR CYS SEQRES 26 A 354 ALA THR ASP THR LYS ASN VAL GLN PHE VAL PHE ASP ALA SEQRES 27 A 354 VAL THR ASP VAL ILE ILE LYS ASN ASN LEU LYS ASP CYS SEQRES 28 A 354 GLY LEU PHE SEQRES 1 B 340 MET SER GLU LEU ASP GLN LEU ARG GLN GLU ALA GLU GLN SEQRES 2 B 340 LEU LYS ASN GLN ILE ARG ASP ALA ARG LYS ALA CYS ALA SEQRES 3 B 340 ASP ALA THR LEU SER GLN ILE THR ASN ASN ILE ASP PRO SEQRES 4 B 340 VAL GLY ARG ILE GLN MET ARG THR ARG ARG THR LEU ARG SEQRES 5 B 340 GLY HIS LEU ALA LYS ILE TYR ALA MET HIS TRP GLY THR SEQRES 6 B 340 ASP SER ARG LEU LEU VAL SER ALA SER GLN ASP GLY LYS SEQRES 7 B 340 LEU ILE ILE TRP ASP SER TYR THR THR ASN LYS VAL HIS SEQRES 8 B 340 ALA ILE PRO LEU ARG SER SER TRP VAL MET THR CYS ALA SEQRES 9 B 340 TYR ALA PRO SER GLY ASN TYR VAL ALA CYS GLY GLY LEU SEQRES 10 B 340 ASP ASN ILE CYS SER ILE TYR ASN LEU LYS THR ARG GLU SEQRES 11 B 340 GLY ASN VAL ARG VAL SER ARG GLU LEU ALA GLY HIS THR SEQRES 12 B 340 GLY TYR LEU SER CYS CYS ARG PHE LEU ASP ASP ASN GLN SEQRES 13 B 340 ILE VAL THR SER SER GLY ASP THR THR CYS ALA LEU TRP SEQRES 14 B 340 ASP ILE GLU THR GLY GLN GLN THR THR THR PHE THR GLY SEQRES 15 B 340 HIS THR GLY ASP VAL MET SER LEU SER LEU ALA PRO ASP SEQRES 16 B 340 THR ARG LEU PHE VAL SER GLY ALA CYS ASP ALA SER ALA SEQRES 17 B 340 LYS LEU TRP ASP VAL ARG GLU GLY MET CYS ARG GLN THR SEQRES 18 B 340 PHE THR GLY HIS GLU SER ASP ILE ASN ALA ILE CYS PHE SEQRES 19 B 340 PHE PRO ASN GLY ASN ALA PHE ALA THR GLY SER ASP ASP SEQRES 20 B 340 ALA THR CYS ARG LEU PHE ASP LEU ARG ALA ASP GLN GLU SEQRES 21 B 340 LEU MET THR TYR SER HIS ASP ASN ILE ILE CYS GLY ILE SEQRES 22 B 340 THR SER VAL SER PHE SER LYS SER GLY ARG LEU LEU LEU SEQRES 23 B 340 ALA GLY TYR ASP ASP PHE ASN CYS ASN VAL TRP ASP ALA SEQRES 24 B 340 LEU LYS ALA ASP ARG ALA GLY VAL LEU ALA GLY HIS ASP SEQRES 25 B 340 ASN ARG VAL SER CYS LEU GLY VAL THR ASP ASP GLY MET SEQRES 26 B 340 ALA VAL ALA THR GLY SER TRP ASP SER PHE LEU LYS ILE SEQRES 27 B 340 TRP ASN SEQRES 1 C 71 MET ALA SER ASN ASN THR ALA SER ILE ALA GLN ALA ARG SEQRES 2 C 71 LYS LEU VAL GLU GLN LEU LYS MET GLU ALA ASN ILE ASP SEQRES 3 C 71 ARG ILE LYS VAL SER LYS ALA ALA ALA ASP LEU MET ALA SEQRES 4 C 71 TYR CYS GLU ALA HIS ALA LYS GLU ASP PRO LEU LEU THR SEQRES 5 C 71 PRO VAL PRO ALA SER GLU ASN PRO PHE ARG GLU LYS LYS SEQRES 6 C 71 PHE PHE CYS ALA ILE LEU SEQRES 1 R 360 MET GLU GLU CYS TRP VAL THR GLU ILE ALA ASN GLY SER SEQRES 2 R 360 LYS ASP GLY LEU ASP SER ASN PRO MET LYS ASP TYR MET SEQRES 3 R 360 ILE LEU SER GLY PRO GLN LYS THR ALA VAL ALA VAL LEU SEQRES 4 R 360 CYS THR LEU LEU GLY LEU LEU SER ALA LEU GLU ASN VAL SEQRES 5 R 360 ALA VAL LEU TYR LEU ILE LEU SER SER HIS GLN LEU ARG SEQRES 6 R 360 ARG LYS PRO SER TYR LEU PHE ILE GLY SER LEU ALA GLY SEQRES 7 R 360 ALA ASP PHE LEU ALA SER VAL VAL PHE ALA CYS SER PHE SEQRES 8 R 360 VAL ASN PHE HIS VAL PHE HIS GLY VAL ASP SER LYS ALA SEQRES 9 R 360 VAL PHE LEU LEU LYS ILE GLY SER VAL THR MET THR PHE SEQRES 10 R 360 THR ALA SER VAL GLY SER LEU LEU LEU THR ALA ILE ASP SEQRES 11 R 360 ARG TYR LEU CYS LEU ARG TYR PRO PRO SER TYR LYS ALA SEQRES 12 R 360 LEU LEU THR ARG GLY ARG ALA LEU VAL THR LEU GLY ILE SEQRES 13 R 360 MET TRP VAL LEU SER ALA LEU VAL SER TYR LEU PRO LEU SEQRES 14 R 360 MET GLY TRP THR CYS CYS PRO ARG PRO CYS SER GLU LEU SEQRES 15 R 360 PHE PRO LEU ILE PRO ASN ASP TYR LEU LEU SER TRP LEU SEQRES 16 R 360 LEU PHE ILE ALA PHE LEU PHE SER GLY ILE ILE TYR THR SEQRES 17 R 360 TYR GLY HIS VAL LEU TRP LYS ALA HIS GLN HIS VAL ALA SEQRES 18 R 360 SER LEU SER GLY HIS GLN ASP ARG GLN VAL PRO GLY MET SEQRES 19 R 360 ALA ARG MET ARG LEU ASP VAL ARG LEU ALA LYS THR LEU SEQRES 20 R 360 GLY LEU VAL LEU ALA VAL LEU LEU ILE CYS TRP PHE PRO SEQRES 21 R 360 VAL LEU ALA LEU MET ALA HIS SER LEU ALA THR THR LEU SEQRES 22 R 360 SER ASP GLN VAL LYS LYS ALA PHE ALA PHE CYS SER MET SEQRES 23 R 360 LEU CYS LEU ILE ASN SER MET VAL ASN PRO VAL ILE TYR SEQRES 24 R 360 ALA LEU ARG SER GLY GLU ILE ARG SER SER ALA HIS HIS SEQRES 25 R 360 CYS LEU ALA HIS TRP LYS LYS CYS VAL ARG GLY LEU GLY SEQRES 26 R 360 SER GLU ALA LYS GLU GLU ALA PRO ARG SER SER VAL THR SEQRES 27 R 360 GLU THR GLU ALA ASP GLY LYS ILE THR PRO TRP PRO ASP SEQRES 28 R 360 SER ARG ASP LEU ASP LEU SER ASP CYS SEQRES 1 S 259 ASP VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 S 259 PRO GLY GLY SER ARG LYS LEU SER CYS SER ALA SER GLY SEQRES 3 S 259 PHE ALA PHE SER SER PHE GLY MET HIS TRP VAL ARG GLN SEQRES 4 S 259 ALA PRO GLU LYS GLY LEU GLU TRP VAL ALA TYR ILE SER SEQRES 5 S 259 SER GLY SER GLY THR ILE TYR TYR ALA ASP THR VAL LYS SEQRES 6 S 259 GLY ARG PHE THR ILE SER ARG ASP ASP PRO LYS ASN THR SEQRES 7 S 259 LEU PHE LEU GLN MET THR SER LEU ARG SER GLU ASP THR SEQRES 8 S 259 ALA MET TYR TYR CYS VAL ARG SER ILE TYR TYR TYR GLY SEQRES 9 S 259 SER SER PRO PHE ASP PHE TRP GLY GLN GLY THR THR LEU SEQRES 10 S 259 THR VAL SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY SEQRES 11 S 259 SER GLY GLY GLY GLY SER ASP ILE VAL MET THR GLN ALA SEQRES 12 S 259 THR SER SER VAL PRO VAL THR PRO GLY GLU SER VAL SER SEQRES 13 S 259 ILE SER CYS ARG SER SER LYS SER LEU LEU HIS SER ASN SEQRES 14 S 259 GLY ASN THR TYR LEU TYR TRP PHE LEU GLN ARG PRO GLY SEQRES 15 S 259 GLN SER PRO GLN LEU LEU ILE TYR ARG MET SER ASN LEU SEQRES 16 S 259 ALA SER GLY VAL PRO ASP ARG PHE SER GLY SER GLY SER SEQRES 17 S 259 GLY THR ALA PHE THR LEU THR ILE SER ARG LEU GLU ALA SEQRES 18 S 259 GLU ASP VAL GLY VAL TYR TYR CYS MET GLN HIS LEU GLU SEQRES 19 S 259 TYR PRO LEU THR PHE GLY ALA GLY THR LYS LEU GLU LEU SEQRES 20 S 259 LYS ALA ALA ALA HIS HIS HIS HIS HIS HIS HIS HIS HET E3R R 401 29 HETNAM E3R 7-[(6AR,9R,10AR)-1-HYDROXY-9-(HYDROXYMETHYL)-6,6- HETNAM 2 E3R DIMETHYL-6A,7,8,9,10,10A-HEXAHYDRO-6H-BENZO[C]CHROMEN- HETNAM 3 E3R 3-YL]- 7-METHYLOCTANENITRILE FORMUL 6 E3R C25 H37 N O3 HELIX 1 AA1 SER A 6 ARG A 32 1 27 HELIX 2 AA2 GLU A 207 GLU A 216 5 10 HELIX 3 AA3 ASN A 241 ASN A 255 1 15 HELIX 4 AA4 LYS A 270 LYS A 279 1 10 HELIX 5 AA5 THR A 295 GLU A 308 1 14 HELIX 6 AA6 LYS A 330 CYS A 351 1 22 HELIX 7 AA7 LEU B 4 ALA B 24 1 21 HELIX 8 AA8 THR B 29 THR B 34 1 6 HELIX 9 AA9 ASN B 35 ILE B 37 5 3 HELIX 10 AB1 LYS B 280 GLY B 282 5 3 HELIX 11 AB2 SER C 8 ASN C 24 1 17 HELIX 12 AB3 LYS C 29 HIS C 44 1 16 HELIX 13 AB4 ALA C 45 ASP C 48 5 4 HELIX 14 AB5 GLY R 30 SER R 61 1 32 HELIX 15 AB6 SER R 61 ARG R 66 1 6 HELIX 16 AB7 SER R 69 VAL R 86 1 18 HELIX 17 AB8 VAL R 86 VAL R 96 1 11 HELIX 18 AB9 VAL R 105 ARG R 131 1 27 HELIX 19 AC1 SER R 140 LEU R 145 1 6 HELIX 20 AC2 THR R 146 VAL R 164 1 19 HELIX 21 AC3 PRO R 187 ALA R 216 1 30 HELIX 22 AC4 HIS R 219 SER R 224 1 6 HELIX 23 AC5 ARG R 238 LYS R 245 1 8 HELIX 24 AC6 LYS R 245 LEU R 254 1 10 HELIX 25 AC7 TRP R 258 ALA R 263 1 6 HELIX 26 AC8 MET R 265 LEU R 269 5 5 HELIX 27 AC9 LYS R 279 SER R 285 1 7 HELIX 28 AD1 MET R 286 ASN R 291 1 6 HELIX 29 AD2 VAL R 294 ALA R 300 1 7 HELIX 30 AD3 SER R 303 HIS R 311 1 9 HELIX 31 AD4 ALA S 28 PHE S 32 5 5 HELIX 32 AD5 ARG S 87 THR S 91 5 5 HELIX 33 AD6 GLU S 208 VAL S 212 5 5 SHEET 1 AA1 6 VAL A 185 THR A 190 0 SHEET 2 AA1 6 HIS A 195 ASP A 200 -1 O PHE A 196 N PHE A 189 SHEET 3 AA1 6 VAL A 34 LEU A 38 1 N LEU A 36 O LYS A 197 SHEET 4 AA1 6 ALA A 220 ALA A 226 1 O ALA A 220 N LEU A 37 SHEET 5 AA1 6 SER A 263 ASN A 269 1 O ILE A 265 N ILE A 221 SHEET 6 AA1 6 ILE A 319 HIS A 322 1 O HIS A 322 N LEU A 268 SHEET 1 AA2 4 ARG B 46 ARG B 52 0 SHEET 2 AA2 4 PHE B 335 ASN B 340 -1 O LEU B 336 N LEU B 51 SHEET 3 AA2 4 VAL B 327 SER B 331 -1 N VAL B 327 O TRP B 339 SHEET 4 AA2 4 VAL B 315 VAL B 320 -1 N CYS B 317 O GLY B 330 SHEET 1 AA3 4 ILE B 58 TRP B 63 0 SHEET 2 AA3 4 LEU B 69 SER B 74 -1 O ALA B 73 N ALA B 60 SHEET 3 AA3 4 LYS B 78 ASP B 83 -1 O TRP B 82 N LEU B 70 SHEET 4 AA3 4 ASN B 88 PRO B 94 -1 O ASN B 88 N ASP B 83 SHEET 1 AA4 4 VAL B 100 TYR B 105 0 SHEET 2 AA4 4 TYR B 111 GLY B 116 -1 O ALA B 113 N ALA B 104 SHEET 3 AA4 4 CYS B 121 ASN B 125 -1 O TYR B 124 N VAL B 112 SHEET 4 AA4 4 ARG B 134 LEU B 139 -1 O ARG B 134 N ASN B 125 SHEET 1 AA5 4 LEU B 146 PHE B 151 0 SHEET 2 AA5 4 GLN B 156 SER B 161 -1 O VAL B 158 N ARG B 150 SHEET 3 AA5 4 THR B 165 ASP B 170 -1 O ALA B 167 N THR B 159 SHEET 4 AA5 4 GLN B 176 THR B 181 -1 O THR B 178 N LEU B 168 SHEET 1 AA6 4 VAL B 187 LEU B 192 0 SHEET 2 AA6 4 LEU B 198 ALA B 203 -1 O VAL B 200 N SER B 191 SHEET 3 AA6 4 ALA B 208 ASP B 212 -1 O TRP B 211 N PHE B 199 SHEET 4 AA6 4 CYS B 218 PHE B 222 -1 O PHE B 222 N ALA B 208 SHEET 1 AA7 4 ILE B 229 PHE B 234 0 SHEET 2 AA7 4 ALA B 240 SER B 245 -1 O ALA B 242 N CYS B 233 SHEET 3 AA7 4 CYS B 250 ASP B 254 -1 O PHE B 253 N PHE B 241 SHEET 4 AA7 4 GLU B 260 TYR B 264 -1 O LEU B 261 N LEU B 252 SHEET 1 AA8 4 ILE B 273 PHE B 278 0 SHEET 2 AA8 4 LEU B 284 TYR B 289 -1 O GLY B 288 N SER B 275 SHEET 3 AA8 4 ASN B 293 ASP B 298 -1 O ASN B 293 N TYR B 289 SHEET 4 AA8 4 ARG B 304 ALA B 309 -1 O LEU B 308 N CYS B 294 SHEET 1 AA9 4 GLN S 3 SER S 7 0 SHEET 2 AA9 4 SER S 17 SER S 25 -1 O SER S 21 N SER S 7 SHEET 3 AA9 4 THR S 78 THR S 84 -1 O LEU S 79 N CYS S 22 SHEET 4 AA9 4 PHE S 68 ASP S 73 -1 N THR S 69 O GLN S 82 SHEET 1 AB1 6 GLY S 10 VAL S 12 0 SHEET 2 AB1 6 THR S 115 VAL S 119 1 O THR S 118 N VAL S 12 SHEET 3 AB1 6 ALA S 92 SER S 99 -1 N ALA S 92 O LEU S 117 SHEET 4 AB1 6 GLY S 33 GLN S 39 -1 N VAL S 37 O TYR S 95 SHEET 5 AB1 6 LEU S 45 ILE S 51 -1 O VAL S 48 N TRP S 36 SHEET 6 AB1 6 ILE S 58 TYR S 60 -1 O TYR S 59 N TYR S 50 SHEET 1 AB2 4 GLY S 10 VAL S 12 0 SHEET 2 AB2 4 THR S 115 VAL S 119 1 O THR S 118 N VAL S 12 SHEET 3 AB2 4 ALA S 92 SER S 99 -1 N ALA S 92 O LEU S 117 SHEET 4 AB2 4 PHE S 110 TRP S 111 -1 O PHE S 110 N ARG S 98 SHEET 1 AB3 5 SER S 134 PRO S 136 0 SHEET 2 AB3 5 THR S 231 GLU S 234 1 O LYS S 232 N VAL S 135 SHEET 3 AB3 5 VAL S 214 GLN S 219 -1 N TYR S 215 O THR S 231 SHEET 4 AB3 5 LEU S 162 GLN S 167 -1 N TYR S 163 O MET S 218 SHEET 5 AB3 5 PRO S 173 ILE S 177 -1 O LEU S 176 N TRP S 164 SHEET 1 AB4 3 VAL S 143 ARG S 148 0 SHEET 2 AB4 3 ALA S 199 ILE S 204 -1 O PHE S 200 N CYS S 147 SHEET 3 AB4 3 PHE S 191 GLY S 195 -1 N SER S 194 O THR S 201 SSBOND 1 CYS R 174 CYS R 179 1555 1555 2.05 SSBOND 2 CYS S 22 CYS S 96 1555 1555 2.04 SSBOND 3 CYS S 147 CYS S 217 1555 1555 2.04 CISPEP 1 TYR S 223 PRO S 224 0 4.41 SITE 1 AC1 15 TYR R 25 PHE R 87 SER R 90 PHE R 91 SITE 2 AC1 15 PHE R 94 VAL R 113 THR R 114 PHE R 117 SITE 3 AC1 15 PHE R 183 PRO R 184 ILE R 186 TRP R 194 SITE 4 AC1 15 PHE R 281 SER R 285 CYS R 288 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000