PDB Short entry for 6L6Q HEADER DNA BINDING PROTEIN 29-OCT-19 6L6Q TITLE STRUCTURAL BASIS OF NR4A2 HOMODIMERS BINDING TO SELECTIVE NUR- TITLE 2 RESPONSIVE ELEMENTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR RELATED 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 4 GROUP A MEMBER 2 ISOFORM 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(P*AP*GP*TP*GP*AP*CP*CP*TP*TP*TP*AP*AP*AP*GP*GP*TP*CP*AP*CP*T)-3'); COMPND 9 CHAIN: C, F; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR4A2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NR4A2, NUCLEAR RECEPTOR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.JIANG,Y.CHEN REVDAT 4 22-NOV-23 6L6Q 1 REMARK REVDAT 3 01-JAN-20 6L6Q 1 JRNL REVDAT 2 27-NOV-19 6L6Q 1 JRNL REVDAT 1 20-NOV-19 6L6Q 0 JRNL AUTH L.JIANG,S.DAI,J.LI,X.LIANG,L.QU,X.CHEN,M.GUO,Z.CHEN,L.CHEN, JRNL AUTH 2 H.WEI,Y.CHEN JRNL TITL STRUCTURAL BASIS OF BINDING OF HOMODIMERS OF THE NUCLEAR JRNL TITL 2 RECEPTOR NR4A2 TO SELECTIVE NUR-RESPONSIVE DNA ELEMENTS. JRNL REF J.BIOL.CHEM. V. 294 19795 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31723028 JRNL DOI 10.1074/JBC.RA119.010730 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 99.690 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.2297 - 4.9648 0.90 1272 134 0.1921 0.2237 REMARK 3 2 4.9648 - 3.9462 0.90 1270 138 0.2102 0.2582 REMARK 3 3 3.9462 - 3.4490 0.90 1292 146 0.2453 0.2922 REMARK 3 4 3.4490 - 3.1344 0.90 1252 144 0.2501 0.3057 REMARK 3 5 3.1344 - 2.9101 0.90 1279 146 0.3475 0.3628 REMARK 3 6 2.9101 - 2.7388 0.90 1233 131 0.3706 0.4160 REMARK 3 7 2.7388 - 2.6018 0.90 1308 148 0.4157 0.3948 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.5000 REMARK 3 OPERATOR: H,-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2261 REMARK 3 ANGLE : 0.866 3202 REMARK 3 CHIRALITY : 0.047 349 REMARK 3 PLANARITY : 0.004 276 REMARK 3 DIHEDRAL : 18.625 1232 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7352 -21.0774 -17.8937 REMARK 3 T TENSOR REMARK 3 T11: 0.8358 T22: 0.7495 REMARK 3 T33: 0.1994 T12: -0.3335 REMARK 3 T13: 0.0441 T23: -0.0831 REMARK 3 L TENSOR REMARK 3 L11: 0.5425 L22: 0.5050 REMARK 3 L33: 0.6397 L12: 0.2946 REMARK 3 L13: -0.2349 L23: -0.0648 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.1151 S13: -0.0132 REMARK 3 S21: -0.0574 S22: 0.0377 S23: -0.0358 REMARK 3 S31: -0.0515 S32: 0.0534 S33: -0.0065 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 293 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.7794 -26.9194 -8.1846 REMARK 3 T TENSOR REMARK 3 T11: 0.6912 T22: 0.5645 REMARK 3 T33: 0.2217 T12: -0.1200 REMARK 3 T13: 0.0948 T23: -0.1323 REMARK 3 L TENSOR REMARK 3 L11: 0.1986 L22: 0.4177 REMARK 3 L33: 0.5239 L12: -0.0217 REMARK 3 L13: 0.1887 L23: 0.0924 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: 0.1041 S13: -0.0570 REMARK 3 S21: 0.0326 S22: 0.1222 S23: -0.0851 REMARK 3 S31: 0.0805 S32: 0.2607 S33: -0.0764 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 333 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.0808 -9.3536 -21.7231 REMARK 3 T TENSOR REMARK 3 T11: 0.9035 T22: 1.0694 REMARK 3 T33: 0.6851 T12: -0.5650 REMARK 3 T13: 0.0759 T23: 0.1246 REMARK 3 L TENSOR REMARK 3 L11: 0.1769 L22: 0.7444 REMARK 3 L33: 0.0227 L12: -0.2038 REMARK 3 L13: -0.0635 L23: 0.0682 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: -0.1399 S13: 0.0132 REMARK 3 S21: 0.1708 S22: -0.0376 S23: -0.0653 REMARK 3 S31: -0.0542 S32: 0.0653 S33: -0.0050 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 262 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.3944 -1.1472 -44.3659 REMARK 3 T TENSOR REMARK 3 T11: 0.6252 T22: 0.6136 REMARK 3 T33: 0.4632 T12: -0.2933 REMARK 3 T13: -0.2503 T23: 0.1950 REMARK 3 L TENSOR REMARK 3 L11: 5.0365 L22: 1.9071 REMARK 3 L33: 6.0618 L12: 0.9420 REMARK 3 L13: -1.6186 L23: -2.3461 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: -0.0339 S13: 0.0675 REMARK 3 S21: 0.1218 S22: -0.0100 S23: 0.0820 REMARK 3 S31: -0.0083 S32: -0.0550 S33: -0.0036 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 272 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.3442 -8.2455 -41.7097 REMARK 3 T TENSOR REMARK 3 T11: 0.7345 T22: 0.6331 REMARK 3 T33: 0.2684 T12: -0.3605 REMARK 3 T13: -0.1670 T23: 0.1040 REMARK 3 L TENSOR REMARK 3 L11: 0.1268 L22: 0.0552 REMARK 3 L33: 0.3278 L12: 0.0787 REMARK 3 L13: 0.1957 L23: 0.1341 REMARK 3 S TENSOR REMARK 3 S11: 0.0504 S12: -0.1518 S13: -0.0530 REMARK 3 S21: 0.1620 S22: 0.0112 S23: -0.0567 REMARK 3 S31: 0.0861 S32: -0.0313 S33: -0.0488 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 281 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.4136 -11.1863 -56.3199 REMARK 3 T TENSOR REMARK 3 T11: 0.5297 T22: 0.8303 REMARK 3 T33: 0.2697 T12: -0.3117 REMARK 3 T13: -0.0629 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 0.6969 L22: 0.2118 REMARK 3 L33: 1.2476 L12: 0.0121 REMARK 3 L13: -0.6065 L23: -0.1725 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: 0.1206 S13: -0.0519 REMARK 3 S21: 0.0350 S22: -0.0200 S23: 0.0057 REMARK 3 S31: 0.2364 S32: -0.0838 S33: 0.0004 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 303 THROUGH 315 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.0868 -1.5492 -56.9333 REMARK 3 T TENSOR REMARK 3 T11: 0.4240 T22: 0.7390 REMARK 3 T33: 0.4377 T12: -0.0118 REMARK 3 T13: 0.0572 T23: 0.0687 REMARK 3 L TENSOR REMARK 3 L11: 1.0295 L22: 1.4728 REMARK 3 L33: 1.2910 L12: -0.6375 REMARK 3 L13: -0.3620 L23: 0.9519 REMARK 3 S TENSOR REMARK 3 S11: 0.0941 S12: 0.1122 S13: -0.0405 REMARK 3 S21: -0.1624 S22: 0.0540 S23: -0.1875 REMARK 3 S31: 0.0354 S32: 0.1353 S33: -0.1067 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 316 THROUGH 326 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.4211 -11.0955 -54.3288 REMARK 3 T TENSOR REMARK 3 T11: 0.7136 T22: 0.7179 REMARK 3 T33: 0.5008 T12: -0.1450 REMARK 3 T13: -0.2021 T23: 0.2117 REMARK 3 L TENSOR REMARK 3 L11: 0.9022 L22: 1.3934 REMARK 3 L33: 0.5541 L12: -0.3660 REMARK 3 L13: 0.3587 L23: -0.7619 REMARK 3 S TENSOR REMARK 3 S11: 0.0970 S12: 0.1576 S13: -0.1201 REMARK 3 S21: -0.0287 S22: -0.0753 S23: -0.1677 REMARK 3 S31: 0.2260 S32: 0.1798 S33: -0.0453 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 327 THROUGH 338 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.9357 -19.8052 -46.0960 REMARK 3 T TENSOR REMARK 3 T11: 1.0435 T22: 0.8006 REMARK 3 T33: 0.4215 T12: -0.4983 REMARK 3 T13: -0.0962 T23: 0.0910 REMARK 3 L TENSOR REMARK 3 L11: 1.7721 L22: 1.8809 REMARK 3 L33: 0.6509 L12: 0.7522 REMARK 3 L13: -1.0555 L23: -0.6318 REMARK 3 S TENSOR REMARK 3 S11: -0.1741 S12: 0.1744 S13: -0.2197 REMARK 3 S21: -0.0281 S22: 0.0162 S23: 0.1883 REMARK 3 S31: 0.2217 S32: -0.1491 S33: 0.1036 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 339 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.6508 -16.9815 -39.2791 REMARK 3 T TENSOR REMARK 3 T11: 0.7313 T22: 0.6713 REMARK 3 T33: 0.6984 T12: -0.4013 REMARK 3 T13: 0.0604 T23: 0.0882 REMARK 3 L TENSOR REMARK 3 L11: 0.1153 L22: 0.0029 REMARK 3 L33: 1.8645 L12: -0.0036 REMARK 3 L13: 0.4404 L23: -0.0226 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: 0.0748 S13: 0.0065 REMARK 3 S21: -0.0537 S22: 0.0006 S23: 0.0512 REMARK 3 S31: 0.0695 S32: -0.0019 S33: -0.0206 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.9782 -2.5966 -56.3118 REMARK 3 T TENSOR REMARK 3 T11: 0.5571 T22: 0.7187 REMARK 3 T33: 0.0377 T12: -0.1793 REMARK 3 T13: 0.0949 T23: 0.0577 REMARK 3 L TENSOR REMARK 3 L11: 0.8038 L22: 1.0962 REMARK 3 L33: 2.3261 L12: -0.2312 REMARK 3 L13: -0.6468 L23: 0.0073 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: 0.0228 S13: -0.0130 REMARK 3 S21: 0.0263 S22: -0.0422 S23: 0.0103 REMARK 3 S31: 0.0962 S32: -0.1036 S33: 0.0312 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.4034 -8.4817 -31.4010 REMARK 3 T TENSOR REMARK 3 T11: 1.0099 T22: 1.1349 REMARK 3 T33: -0.2681 T12: -0.5112 REMARK 3 T13: 0.1435 T23: 0.0729 REMARK 3 L TENSOR REMARK 3 L11: 0.1617 L22: 0.0710 REMARK 3 L33: 0.5382 L12: 0.0228 REMARK 3 L13: -0.1206 L23: -0.1752 REMARK 3 S TENSOR REMARK 3 S11: 0.0188 S12: 0.0201 S13: 0.0602 REMARK 3 S21: 0.0158 S22: 0.0238 S23: 0.0188 REMARK 3 S31: -0.0179 S32: -0.0659 S33: 0.0060 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1454 -6.7595 -8.4263 REMARK 3 T TENSOR REMARK 3 T11: 0.7739 T22: 0.4548 REMARK 3 T33: 0.1100 T12: -0.0659 REMARK 3 T13: -0.1303 T23: 0.0614 REMARK 3 L TENSOR REMARK 3 L11: 1.0861 L22: 0.7905 REMARK 3 L33: 2.5226 L12: -0.6278 REMARK 3 L13: 0.5581 L23: 0.6559 REMARK 3 S TENSOR REMARK 3 S11: -0.0839 S12: 0.1577 S13: 0.1834 REMARK 3 S21: -0.2118 S22: -0.0427 S23: -0.0364 REMARK 3 S31: -0.3125 S32: 0.0666 S33: 0.0283 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3135 -13.3006 -8.0015 REMARK 3 T TENSOR REMARK 3 T11: 0.6844 T22: 0.5042 REMARK 3 T33: -0.0037 T12: -0.1650 REMARK 3 T13: 0.1190 T23: 0.1398 REMARK 3 L TENSOR REMARK 3 L11: 0.9088 L22: 0.7521 REMARK 3 L33: 1.8818 L12: -0.1449 REMARK 3 L13: -0.0675 L23: -0.6937 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: -0.0213 S13: -0.0061 REMARK 3 S21: 0.0484 S22: 0.0156 S23: -0.0222 REMARK 3 S31: -0.0689 S32: 0.0816 S33: 0.0264 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6673 -5.6467 -24.3310 REMARK 3 T TENSOR REMARK 3 T11: 0.8207 T22: 0.7411 REMARK 3 T33: 0.1044 T12: -0.3502 REMARK 3 T13: 0.1326 T23: 0.0656 REMARK 3 L TENSOR REMARK 3 L11: 0.0746 L22: 0.5828 REMARK 3 L33: 1.2240 L12: 0.1354 REMARK 3 L13: -0.2918 L23: -0.6873 REMARK 3 S TENSOR REMARK 3 S11: 0.0264 S12: 0.0416 S13: 0.0511 REMARK 3 S21: -0.0404 S22: 0.0758 S23: 0.0320 REMARK 3 S31: -0.1467 S32: -0.0143 S33: -0.0849 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.3477 -9.6796 -40.9496 REMARK 3 T TENSOR REMARK 3 T11: 0.7717 T22: 0.7642 REMARK 3 T33: -0.3238 T12: -0.3946 REMARK 3 T13: -0.0344 T23: 0.1754 REMARK 3 L TENSOR REMARK 3 L11: 0.3221 L22: 0.4265 REMARK 3 L33: 1.9315 L12: -0.1045 REMARK 3 L13: 0.1694 L23: -0.1697 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: 0.0617 S13: -0.0146 REMARK 3 S21: 0.0222 S22: -0.0400 S23: -0.0556 REMARK 3 S31: 0.1063 S32: 0.1218 S33: 0.0704 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4525 1.5585 -55.8166 REMARK 3 T TENSOR REMARK 3 T11: 0.5041 T22: 0.7907 REMARK 3 T33: 0.1636 T12: -0.0415 REMARK 3 T13: 0.1561 T23: -0.0465 REMARK 3 L TENSOR REMARK 3 L11: 0.7692 L22: 1.2639 REMARK 3 L33: 1.9852 L12: -0.7496 REMARK 3 L13: 0.4868 L23: 0.4720 REMARK 3 S TENSOR REMARK 3 S11: -0.0433 S12: -0.1516 S13: -0.0560 REMARK 3 S21: 0.1711 S22: -0.0727 S23: 0.1730 REMARK 3 S31: 0.0628 S32: -0.2335 S33: 0.0199 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 262 THROUGH 329 OR REMARK 3 (RESID 330 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 331 REMARK 3 THROUGH 338 OR (RESID 339 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 340 THROUGH 344 OR (RESID 345 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 346)) REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 776 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN F REMARK 3 ATOM PAIRS NUMBER : 394 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L6Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014302. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9915 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.601 REMARK 200 RESOLUTION RANGE LOW (A) : 32.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.07458 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55550 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1CIT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 MM NACL, 50 MM MES (PH 5.93), 10 REMARK 280 MM MGCL2, 5 MM CACL2, AND 10-12% PEG4K (W/V), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 129.63650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 194.45475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.81825 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 330 CG CD CE NZ REMARK 470 LYS B 339 CG CD CE NZ REMARK 470 LEU B 345 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 12 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT C 16 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA F 12 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DA F 13 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 300 8.80 -66.38 REMARK 500 ALA A 301 -154.47 -151.84 REMARK 500 ASN A 302 9.00 -66.62 REMARK 500 ASP A 336 -119.93 58.65 REMARK 500 ALA B 301 -150.60 -123.76 REMARK 500 ASP B 336 -125.76 61.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 263 SG REMARK 620 2 CYS A 266 SG 105.9 REMARK 620 3 CYS A 280 SG 108.0 106.5 REMARK 620 4 CYS A 283 SG 122.6 119.3 91.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 299 SG REMARK 620 2 CYS A 305 SG 105.7 REMARK 620 3 CYS A 315 SG 111.3 113.9 REMARK 620 4 CYS A 318 SG 112.8 109.9 103.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 263 SG REMARK 620 2 CYS B 266 SG 91.4 REMARK 620 3 CYS B 283 SG 101.3 105.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 299 SG REMARK 620 2 CYS B 305 SG 100.9 REMARK 620 3 CYS B 315 SG 103.7 118.1 REMARK 620 4 CYS B 318 SG 107.6 114.7 110.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 DBREF 6L6Q A 262 346 UNP F1D8N6 F1D8N6_HUMAN 262 346 DBREF 6L6Q B 262 346 UNP F1D8N6 F1D8N6_HUMAN 262 346 DBREF 6L6Q C 1 20 PDB 6L6Q 6L6Q 1 20 DBREF 6L6Q F 1 20 PDB 6L6Q 6L6Q 1 20 SEQRES 1 A 85 LEU CYS ALA VAL CYS GLY ASP ASN ALA ALA CYS GLN HIS SEQRES 2 A 85 TYR GLY VAL ARG THR CYS GLU GLY CYS LYS GLY PHE PHE SEQRES 3 A 85 LYS ARG THR VAL GLN LYS ASN ALA LYS TYR VAL CYS LEU SEQRES 4 A 85 ALA ASN LYS ASN CYS PRO VAL ASP LYS ARG ARG ARG ASN SEQRES 5 A 85 ARG CYS GLN TYR CYS ARG PHE GLN LYS CYS LEU ALA VAL SEQRES 6 A 85 GLY MET VAL LYS GLU VAL VAL ARG THR ASP SER LEU LYS SEQRES 7 A 85 GLY ARG ARG GLY ARG LEU PRO SEQRES 1 B 85 LEU CYS ALA VAL CYS GLY ASP ASN ALA ALA CYS GLN HIS SEQRES 2 B 85 TYR GLY VAL ARG THR CYS GLU GLY CYS LYS GLY PHE PHE SEQRES 3 B 85 LYS ARG THR VAL GLN LYS ASN ALA LYS TYR VAL CYS LEU SEQRES 4 B 85 ALA ASN LYS ASN CYS PRO VAL ASP LYS ARG ARG ARG ASN SEQRES 5 B 85 ARG CYS GLN TYR CYS ARG PHE GLN LYS CYS LEU ALA VAL SEQRES 6 B 85 GLY MET VAL LYS GLU VAL VAL ARG THR ASP SER LEU LYS SEQRES 7 B 85 GLY ARG ARG GLY ARG LEU PRO SEQRES 1 C 20 DA DG DT DG DA DC DC DT DT DT DA DA DA SEQRES 2 C 20 DG DG DT DC DA DC DT SEQRES 1 F 20 DA DG DT DG DA DC DC DT DT DT DA DA DA SEQRES 2 F 20 DG DG DT DC DA DC DT HET ZN A 401 1 HET ZN A 402 1 HET ZN B 401 1 HET ZN B 402 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *21(H2 O) HELIX 1 AA1 CYS A 280 LYS A 293 1 14 HELIX 2 AA2 CYS A 315 GLY A 327 1 13 HELIX 3 AA3 VAL A 329 VAL A 333 5 5 HELIX 4 AA4 THR A 335 LYS A 339 5 5 HELIX 5 AA5 CYS B 280 LYS B 293 1 14 HELIX 6 AA6 CYS B 315 GLY B 327 1 13 HELIX 7 AA7 VAL B 329 VAL B 333 5 5 HELIX 8 AA8 THR B 335 LYS B 339 5 5 SHEET 1 AA1 2 GLN A 273 HIS A 274 0 SHEET 2 AA1 2 VAL A 277 ARG A 278 -1 O VAL A 277 N HIS A 274 SHEET 1 AA2 2 GLN B 273 HIS B 274 0 SHEET 2 AA2 2 VAL B 277 ARG B 278 -1 O VAL B 277 N HIS B 274 LINK SG CYS A 263 ZN ZN A 401 1555 1555 2.52 LINK SG CYS A 266 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 280 ZN ZN A 401 1555 1555 2.57 LINK SG CYS A 283 ZN ZN A 401 1555 1555 2.42 LINK SG CYS A 299 ZN ZN A 402 1555 1555 2.24 LINK SG CYS A 305 ZN ZN A 402 1555 1555 2.35 LINK SG CYS A 315 ZN ZN A 402 1555 1555 2.40 LINK SG CYS A 318 ZN ZN A 402 1555 1555 2.25 LINK SG CYS B 263 ZN ZN B 401 1555 1555 2.83 LINK SG CYS B 266 ZN ZN B 401 1555 1555 2.60 LINK SG CYS B 283 ZN ZN B 401 1555 1555 2.58 LINK SG CYS B 299 ZN ZN B 402 1555 1555 2.41 LINK SG CYS B 305 ZN ZN B 402 1555 1555 2.29 LINK SG CYS B 315 ZN ZN B 402 1555 1555 2.26 LINK SG CYS B 318 ZN ZN B 402 1555 1555 2.28 SITE 1 AC1 5 CYS A 263 VAL A 265 CYS A 266 CYS A 280 SITE 2 AC1 5 CYS A 283 SITE 1 AC2 4 CYS A 299 CYS A 305 CYS A 315 CYS A 318 SITE 1 AC3 4 CYS B 263 CYS B 266 CYS B 280 CYS B 283 SITE 1 AC4 4 CYS B 299 CYS B 305 CYS B 315 CYS B 318 CRYST1 35.696 35.696 259.273 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028014 0.000000 0.000000 0.00000 SCALE2 0.000000 0.028014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003857 0.00000