PDB Short entry for 6L9H HEADER DNA BINDING PROTEIN/DNA 10-NOV-19 6L9H TITLE THE HUMAN TELOMERIC NUCLEOSOME DISPLAYS DISTINCT STRUCTURAL AND TITLE 2 DYNAMIC PROPERTIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.1; COMPND 3 CHAIN: A, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HISTONE H4; COMPND 7 CHAIN: B, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HISTONE H2A TYPE 1-B/E; COMPND 11 CHAIN: C, G; COMPND 12 SYNONYM: HISTONE H2A; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: HISTONE H2B TYPE 1-K; COMPND 16 CHAIN: D, H; COMPND 17 SYNONYM: HISTONE H2B; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 5; COMPND 20 MOLECULE: HUMAN TELOMERIC DNA (145-MER) - G-STRAND; COMPND 21 CHAIN: I; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 6; COMPND 24 MOLECULE: HUMAN TELOMERIC DNA (145-MER) - C-STRAND; COMPND 25 CHAIN: J; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 MOL_ID: 5; SOURCE 26 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 27 ORGANISM_COMMON: HUMAN; SOURCE 28 ORGANISM_TAXID: 9606; SOURCE 29 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 30 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 31 MOL_ID: 6; SOURCE 32 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 33 ORGANISM_COMMON: HUMAN; SOURCE 34 ORGANISM_TAXID: 9606; SOURCE 35 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 36 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TELOMERIC DNA, NUCLEOSOME CORE PARTICLE, DNA BINDING PROTEIN, DNA KEYWDS 2 BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.SOMAN,C.W.LIEW,H.L.TEO,N.BEREZHNOY,N.KOROLEV,D.RHODES, AUTHOR 2 L.NORDENSKIOLD REVDAT 3 22-NOV-23 6L9H 1 REMARK REVDAT 2 10-JUN-20 6L9H 1 JRNL REVDAT 1 22-APR-20 6L9H 0 JRNL AUTH A.SOMAN,C.W.LIEW,H.L.TEO,N.V.BEREZHNOY,V.OLIERIC,N.KOROLEV, JRNL AUTH 2 D.RHODES,L.NORDENSKIOLD JRNL TITL THE HUMAN TELOMERIC NUCLEOSOME DISPLAYS DISTINCT STRUCTURAL JRNL TITL 2 AND DYNAMIC PROPERTIES. JRNL REF NUCLEIC ACIDS RES. V. 48 5383 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32374876 JRNL DOI 10.1093/NAR/GKAA289 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (3-OCT-2019) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 51.8 REMARK 3 NUMBER OF REFLECTIONS : 33177 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1620 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 6.51 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 664 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2649 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 638 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE : 0.2623 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.92 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 26 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5982 REMARK 3 NUCLEIC ACID ATOMS : 5939 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.49790 REMARK 3 B22 (A**2) : -2.97750 REMARK 3 B33 (A**2) : 1.47960 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.520 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.534 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.904 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 12721 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 18420 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3703 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1308 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 12721 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1667 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6884 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.76 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.60 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 24.62 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300014425. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33289 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.518 REMARK 200 RESOLUTION RANGE LOW (A) : 92.961 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.6 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 1.50600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3LZ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MANGANASE CHLORIDE, POTASSIUM REMARK 280 CHLORIDE, POTASSIUM CACODYLATE, MPD AND TREHALOSE, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 53.22750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.18800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.69400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.18800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.22750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.69400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 57410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 72390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -401.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 135 REMARK 465 ALA C 14 REMARK 465 LYS C 15 REMARK 465 LYS F 16 REMARK 465 ARG F 17 REMARK 465 HIS F 18 REMARK 465 ARG F 19 REMARK 465 LYS F 20 REMARK 465 VAL F 21 REMARK 465 LEU F 22 REMARK 465 ARG F 23 REMARK 465 ASP F 24 REMARK 465 LYS H 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY H 101 N LYS H 105 2.05 REMARK 500 NZ LYS A 79 OE2 GLU B 74 2.16 REMARK 500 O PRO D 100 CB ALA D 104 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 77 O VAL H 45 3544 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 78 CB - CA - C ANGL. DEV. = -18.7 DEGREES REMARK 500 DG I -29 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG I -22 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT I -21 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG I -5 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT I 52 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG I 61 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT J -53 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA J 3 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA J 63 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 79 115.83 -163.14 REMARK 500 ALA A 114 38.13 -95.92 REMARK 500 ARG B 17 -78.31 -106.92 REMARK 500 LEU C 97 43.13 -108.44 REMARK 500 ASP D 48 42.33 -95.22 REMARK 500 ASN D 81 30.46 -96.55 REMARK 500 GLU D 102 -71.13 -67.32 REMARK 500 LYS E 56 42.79 -86.00 REMARK 500 ALA E 114 38.27 -96.04 REMARK 500 ARG E 134 -69.11 -100.94 REMARK 500 LYS G 74 8.32 58.41 REMARK 500 LEU G 97 43.54 -109.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN I 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN I 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN I 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN I 104 DBREF 6L9H A 40 135 UNP P68431 H31_HUMAN 41 136 DBREF 6L9H B 16 102 UNP P62805 H4_HUMAN 17 103 DBREF 6L9H C 14 118 UNP P04908 H2A1B_HUMAN 15 119 DBREF 6L9H D 28 122 UNP O60814 H2B1K_HUMAN 32 126 DBREF 6L9H E 40 135 UNP P68431 H31_HUMAN 41 136 DBREF 6L9H F 16 102 UNP P62805 H4_HUMAN 17 103 DBREF 6L9H G 14 118 UNP P04908 H2A1B_HUMAN 15 119 DBREF 6L9H H 28 122 UNP O60814 H2B1K_HUMAN 32 126 DBREF 6L9H I -72 72 PDB 6L9H 6L9H -72 72 DBREF 6L9H J -72 72 PDB 6L9H 6L9H -72 72 SEQRES 1 A 96 ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE ARG SEQRES 2 A 96 ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS LEU SEQRES 3 A 96 PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP PHE SEQRES 4 A 96 LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET ALA SEQRES 5 A 96 LEU GLN GLU ALA CYS GLU ALA TYR LEU VAL GLY LEU PHE SEQRES 6 A 96 GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG VAL SEQRES 7 A 96 THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG ILE SEQRES 8 A 96 ARG GLY GLU ARG ALA SEQRES 1 B 87 LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN ILE GLN GLY SEQRES 2 B 87 ILE THR LYS PRO ALA ILE ARG ARG LEU ALA ARG ARG GLY SEQRES 3 B 87 GLY VAL LYS ARG ILE SER GLY LEU ILE TYR GLU GLU THR SEQRES 4 B 87 ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN VAL ILE ARG SEQRES 5 B 87 ASP ALA VAL THR TYR THR GLU HIS ALA LYS ARG LYS THR SEQRES 6 B 87 VAL THR ALA MET ASP VAL VAL TYR ALA LEU LYS ARG GLN SEQRES 7 B 87 GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 105 ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE PRO SEQRES 2 C 105 VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN TYR SEQRES 3 C 105 SER GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU ALA SEQRES 4 C 105 ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU LEU SEQRES 5 C 105 ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG ILE SEQRES 6 C 105 ILE PRO ARG HIS LEU GLN LEU ALA ILE ARG ASN ASP GLU SEQRES 7 C 105 GLU LEU ASN LYS LEU LEU GLY ARG VAL THR ILE ALA GLN SEQRES 8 C 105 GLY GLY VAL LEU PRO ASN ILE GLN ALA VAL LEU LEU PRO SEQRES 9 C 105 LYS SEQRES 1 D 95 ARG SER ARG LYS GLU SER TYR SER VAL TYR VAL TYR LYS SEQRES 2 D 95 VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SER SER SEQRES 3 D 95 LYS ALA MET GLY ILE MET ASN SER PHE VAL ASN ASP ILE SEQRES 4 D 95 PHE GLU ARG ILE ALA GLY GLU ALA SER ARG LEU ALA HIS SEQRES 5 D 95 TYR ASN LYS ARG SER THR ILE THR SER ARG GLU ILE GLN SEQRES 6 D 95 THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA LYS SEQRES 7 D 95 HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR LYS TYR SEQRES 8 D 95 THR SER ALA LYS SEQRES 1 E 96 ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE ARG SEQRES 2 E 96 ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS LEU SEQRES 3 E 96 PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP PHE SEQRES 4 E 96 LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET ALA SEQRES 5 E 96 LEU GLN GLU ALA CYS GLU ALA TYR LEU VAL GLY LEU PHE SEQRES 6 E 96 GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG VAL SEQRES 7 E 96 THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG ILE SEQRES 8 E 96 ARG GLY GLU ARG ALA SEQRES 1 F 87 LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN ILE GLN GLY SEQRES 2 F 87 ILE THR LYS PRO ALA ILE ARG ARG LEU ALA ARG ARG GLY SEQRES 3 F 87 GLY VAL LYS ARG ILE SER GLY LEU ILE TYR GLU GLU THR SEQRES 4 F 87 ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN VAL ILE ARG SEQRES 5 F 87 ASP ALA VAL THR TYR THR GLU HIS ALA LYS ARG LYS THR SEQRES 6 F 87 VAL THR ALA MET ASP VAL VAL TYR ALA LEU LYS ARG GLN SEQRES 7 F 87 GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 G 105 ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE PRO SEQRES 2 G 105 VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN TYR SEQRES 3 G 105 SER GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU ALA SEQRES 4 G 105 ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU LEU SEQRES 5 G 105 ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG ILE SEQRES 6 G 105 ILE PRO ARG HIS LEU GLN LEU ALA ILE ARG ASN ASP GLU SEQRES 7 G 105 GLU LEU ASN LYS LEU LEU GLY ARG VAL THR ILE ALA GLN SEQRES 8 G 105 GLY GLY VAL LEU PRO ASN ILE GLN ALA VAL LEU LEU PRO SEQRES 9 G 105 LYS SEQRES 1 H 95 ARG SER ARG LYS GLU SER TYR SER VAL TYR VAL TYR LYS SEQRES 2 H 95 VAL LEU LYS GLN VAL HIS PRO ASP THR GLY ILE SER SER SEQRES 3 H 95 LYS ALA MET GLY ILE MET ASN SER PHE VAL ASN ASP ILE SEQRES 4 H 95 PHE GLU ARG ILE ALA GLY GLU ALA SER ARG LEU ALA HIS SEQRES 5 H 95 TYR ASN LYS ARG SER THR ILE THR SER ARG GLU ILE GLN SEQRES 6 H 95 THR ALA VAL ARG LEU LEU LEU PRO GLY GLU LEU ALA LYS SEQRES 7 H 95 HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR LYS TYR SEQRES 8 H 95 THR SER ALA LYS SEQRES 1 I 145 DA DT DC DT DT DA DG DG DG DT DT DA DG SEQRES 2 I 145 DG DG DT DT DA DG DG DG DT DT DA DG DG SEQRES 3 I 145 DG DT DT DA DG DG DG DT DT DA DG DG DG SEQRES 4 I 145 DT DT DA DG DG DG DT DT DA DG DG DG DT SEQRES 5 I 145 DT DA DG DG DG DT DT DA DG DG DG DT DT SEQRES 6 I 145 DA DG DG DG DT DT DA DG DG DG DT DT DA SEQRES 7 I 145 DG DG DG DT DT DA DG DG DG DT DT DA DG SEQRES 8 I 145 DG DG DT DT DA DG DG DG DT DT DA DG DG SEQRES 9 I 145 DG DT DT DA DG DG DG DT DT DA DG DG DG SEQRES 10 I 145 DT DT DA DG DG DG DT DT DA DG DG DG DT SEQRES 11 I 145 DT DA DG DG DG DT DT DA DG DG DG DT DG SEQRES 12 I 145 DA DT SEQRES 1 J 145 DA DT DC DA DC DC DC DT DA DA DC DC DC SEQRES 2 J 145 DT DA DA DC DC DC DT DA DA DC DC DC DT SEQRES 3 J 145 DA DA DC DC DC DT DA DA DC DC DC DT DA SEQRES 4 J 145 DA DC DC DC DT DA DA DC DC DC DT DA DA SEQRES 5 J 145 DC DC DC DT DA DA DC DC DC DT DA DA DC SEQRES 6 J 145 DC DC DT DA DA DC DC DC DT DA DA DC DC SEQRES 7 J 145 DC DT DA DA DC DC DC DT DA DA DC DC DC SEQRES 8 J 145 DT DA DA DC DC DC DT DA DA DC DC DC DT SEQRES 9 J 145 DA DA DC DC DC DT DA DA DC DC DC DT DA SEQRES 10 J 145 DA DC DC DC DT DA DA DC DC DC DT DA DA SEQRES 11 J 145 DC DC DC DT DA DA DC DC DC DT DA DA DG SEQRES 12 J 145 DA DT HET MN I 101 1 HET MN I 102 1 HET MN I 103 1 HET MN I 104 1 HETNAM MN MANGANESE (II) ION FORMUL 11 MN 4(MN 2+) FORMUL 15 HOH *6(H2 O) HELIX 1 AA1 GLY A 44 LYS A 56 1 13 HELIX 2 AA2 ARG A 63 LYS A 79 1 17 HELIX 3 AA3 GLN A 85 ALA A 114 1 30 HELIX 4 AA4 MET A 120 ARG A 131 1 12 HELIX 5 AA5 ASP B 24 ILE B 29 5 6 HELIX 6 AA6 THR B 30 GLY B 41 1 12 HELIX 7 AA7 LEU B 49 ALA B 76 1 28 HELIX 8 AA8 THR B 82 GLY B 94 1 13 HELIX 9 AA9 ARG C 17 GLY C 22 1 6 HELIX 10 AB1 PRO C 26 GLY C 37 1 12 HELIX 11 AB2 GLY C 46 ASP C 72 1 27 HELIX 12 AB3 ILE C 79 ASP C 90 1 12 HELIX 13 AB4 GLU C 91 LEU C 97 1 7 HELIX 14 AB5 GLN C 112 LEU C 116 5 5 HELIX 15 AB6 TYR D 34 HIS D 46 1 13 HELIX 16 AB7 SER D 52 ASN D 81 1 30 HELIX 17 AB8 THR D 87 LEU D 99 1 13 HELIX 18 AB9 PRO D 100 ALA D 121 1 22 HELIX 19 AC1 THR E 45 LYS E 56 1 12 HELIX 20 AC2 ARG E 63 LYS E 79 1 17 HELIX 21 AC3 GLN E 85 ALA E 114 1 30 HELIX 22 AC4 MET E 120 ARG E 131 1 12 HELIX 23 AC5 ASN F 25 ILE F 29 5 5 HELIX 24 AC6 THR F 30 GLY F 41 1 12 HELIX 25 AC7 LEU F 49 ALA F 76 1 28 HELIX 26 AC8 THR F 82 GLN F 93 1 12 HELIX 27 AC9 THR G 16 GLY G 22 1 7 HELIX 28 AD1 PRO G 26 LYS G 36 1 11 HELIX 29 AD2 GLY G 46 ASN G 73 1 28 HELIX 30 AD3 ILE G 79 ASP G 90 1 12 HELIX 31 AD4 GLU G 91 LEU G 97 1 7 HELIX 32 AD5 GLN G 112 LEU G 116 5 5 HELIX 33 AD6 TYR H 34 HIS H 46 1 13 HELIX 34 AD7 SER H 52 ASN H 81 1 30 HELIX 35 AD8 THR H 87 LEU H 99 1 13 HELIX 36 AD9 PRO H 100 ALA H 121 1 22 SHEET 1 AA1 2 ARG A 83 PHE A 84 0 SHEET 2 AA1 2 THR B 80 VAL B 81 1 O VAL B 81 N ARG A 83 SHEET 1 AA2 2 THR A 118 ILE A 119 0 SHEET 2 AA2 2 ARG B 45 ILE B 46 1 O ARG B 45 N ILE A 119 SHEET 1 AA3 2 THR B 96 TYR B 98 0 SHEET 2 AA3 2 VAL G 100 ILE G 102 1 O THR G 101 N TYR B 98 SHEET 1 AA4 2 ARG C 42 VAL C 43 0 SHEET 2 AA4 2 THR D 85 ILE D 86 1 O ILE D 86 N ARG C 42 SHEET 1 AA5 2 ARG C 77 ILE C 78 0 SHEET 2 AA5 2 GLY D 50 ILE D 51 1 O GLY D 50 N ILE C 78 SHEET 1 AA6 2 VAL C 100 ILE C 102 0 SHEET 2 AA6 2 THR F 96 TYR F 98 1 O TYR F 98 N THR C 101 SHEET 1 AA7 2 ARG E 83 PHE E 84 0 SHEET 2 AA7 2 THR F 80 VAL F 81 1 O VAL F 81 N ARG E 83 SHEET 1 AA8 2 THR E 118 ILE E 119 0 SHEET 2 AA8 2 ARG F 45 ILE F 46 1 O ARG F 45 N ILE E 119 SHEET 1 AA9 2 ARG G 42 VAL G 43 0 SHEET 2 AA9 2 THR H 85 ILE H 86 1 O ILE H 86 N ARG G 42 SHEET 1 AB1 2 ARG G 77 ILE G 78 0 SHEET 2 AB1 2 GLY H 50 ILE H 51 1 O GLY H 50 N ILE G 78 LINK N7 DG I 7 MN MN I 104 1555 1555 2.21 LINK N7 DG I 38 MN MN I 101 1555 1555 2.70 LINK N7 DG I 50 MN MN I 103 1555 1555 2.53 SITE 1 AC1 1 DG I 38 SITE 1 AC2 1 DG I -4 SITE 1 AC3 1 DG I 50 SITE 1 AC4 2 DG I 6 DG I 7 CRYST1 106.455 109.388 176.376 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009394 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005670 0.00000