PDB Short entry for 6M1I HEADER PROTEIN BINDING 26-FEB-20 6M1I TITLE CRYOEM STRUCTURE OF HUMAN PAC1 RECEPTOR IN COMPLEX WITH PACAP38 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PITUITARY ADENYLATE CYCLASE-ACTIVATING POLYPEPTIDE TYPE I COMPND 3 RECEPTOR; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PITUITARY ADENYLATE CYCLASE-ACTIVATING POLYPEPTIDE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PACAP; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: NANOBODY 35; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(O) SUBUNIT COMPND 17 GAMMA-2; COMPND 18 CHAIN: D; COMPND 19 SYNONYM: G GAMMA-I; COMPND 20 ENGINEERED: YES; COMPND 21 MOL_ID: 5; COMPND 22 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT COMPND 23 BETA-1; COMPND 24 CHAIN: E; COMPND 25 SYNONYM: TRANSDUCIN BETA CHAIN 1; COMPND 26 ENGINEERED: YES; COMPND 27 MOL_ID: 6; COMPND 28 MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(S) SUBUNIT ALPHA COMPND 29 ISOFORMS SHORT; COMPND 30 CHAIN: F; COMPND 31 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: INSECT BA PHYTOPLASMA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1286942; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 13 ORGANISM_TAXID: 9844; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 MOL_ID: 4; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 GENE: GNG2; SOURCE 21 EXPRESSION_SYSTEM: INSECT BA PHYTOPLASMA; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 1286942; SOURCE 23 MOL_ID: 5; SOURCE 24 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 25 ORGANISM_COMMON: HUMAN; SOURCE 26 ORGANISM_TAXID: 9606; SOURCE 27 GENE: GNB1; SOURCE 28 EXPRESSION_SYSTEM: INSECT BA PHYTOPLASMA; SOURCE 29 EXPRESSION_SYSTEM_TAXID: 1286942; SOURCE 30 MOL_ID: 6; SOURCE 31 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 32 ORGANISM_TAXID: 9606; SOURCE 33 EXPRESSION_SYSTEM: INSECT BA PHYTOPLASMA; SOURCE 34 EXPRESSION_SYSTEM_TAXID: 1286942 KEYWDS GPCR, PROTEIN BINDING EXPDTA ELECTRON MICROSCOPY AUTHOR X.SONG,J.WANG,D.ZHANG,H.W.WANG,Y.MA REVDAT 2 27-MAY-20 6M1I 1 JRNL REVDAT 1 11-MAR-20 6M1I 0 JRNL AUTH J.WANG,X.SONG,D.ZHANG,X.CHEN,X.LI,Y.SUN,C.LI,Y.SONG,Y.DING, JRNL AUTH 2 R.REN,E.H.HARRINGTON,L.A.HU,W.ZHONG,C.XU,X.HUANG,H.W.WANG, JRNL AUTH 3 Y.MA JRNL TITL CRYO-EM STRUCTURES OF PAC1 RECEPTOR REVEAL LIGAND BINDING JRNL TITL 2 MECHANISM. JRNL REF CELL RES. V. 30 436 2020 JRNL REFN ISSN 1001-0602 JRNL PMID 32047270 JRNL DOI 10.1038/S41422-020-0280-2 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CTFFIND, UCSF CHIMERA, PHENIX, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 5B16 REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.500 REMARK 3 NUMBER OF PARTICLES : 82970 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6M1I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1300015851. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PACAP38-PAC1R COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 5.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 0.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 50.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 18 REMARK 465 TYR A 19 REMARK 465 LYS A 20 REMARK 465 ASP A 21 REMARK 465 ASP A 22 REMARK 465 ASN A 42 REMARK 465 GLU A 43 REMARK 465 LEU A 44 REMARK 465 MET A 45 REMARK 465 GLY A 46 REMARK 465 PHE A 47 REMARK 465 ASN A 48 REMARK 465 ASP A 49 REMARK 465 SER A 50 REMARK 465 SER A 51 REMARK 465 GLU A 120 REMARK 465 ASP A 121 REMARK 465 TYR A 139 REMARK 465 GLU A 140 REMARK 465 SER A 141 REMARK 465 GLU A 142 REMARK 465 THR A 143 REMARK 465 MET A 340 REMARK 465 GLY A 341 REMARK 465 GLY A 342 REMARK 465 ASN A 343 REMARK 465 GLU A 344 REMARK 465 SER A 345 REMARK 465 VAL A 420 REMARK 465 ASN A 421 REMARK 465 ARG A 422 REMARK 465 TYR A 423 REMARK 465 PHE A 424 REMARK 465 ALA A 425 REMARK 465 VAL A 426 REMARK 465 ASP A 427 REMARK 465 PHE A 428 REMARK 465 LYS A 429 REMARK 465 HIS A 430 REMARK 465 ARG A 431 REMARK 465 HIS A 432 REMARK 465 PRO A 433 REMARK 465 SER A 434 REMARK 465 LEU A 435 REMARK 465 ALA A 436 REMARK 465 SER A 437 REMARK 465 SER A 438 REMARK 465 LEU A 439 REMARK 465 GLU A 440 REMARK 465 VAL A 441 REMARK 465 LEU A 442 REMARK 465 PHE A 443 REMARK 465 GLN A 444 REMARK 465 GLY B 28 REMARK 465 LYS B 29 REMARK 465 ARG B 30 REMARK 465 TYR B 31 REMARK 465 LYS B 32 REMARK 465 GLN B 33 REMARK 465 ARG B 34 REMARK 465 VAL B 35 REMARK 465 LYS B 36 REMARK 465 ASN B 37 REMARK 465 LYS B 38 REMARK 465 SER C 127 REMARK 465 SER C 128 REMARK 465 HIS C 129 REMARK 465 HIS C 130 REMARK 465 HIS C 131 REMARK 465 HIS C 132 REMARK 465 HIS C 133 REMARK 465 HIS C 134 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 SER D 3 REMARK 465 ASN D 4 REMARK 465 ASN D 5 REMARK 465 GLU D 63 REMARK 465 LYS D 64 REMARK 465 LYS D 65 REMARK 465 PHE D 66 REMARK 465 PHE D 67 REMARK 465 CYS D 68 REMARK 465 ALA D 69 REMARK 465 ILE D 70 REMARK 465 LEU D 71 REMARK 465 GLY E 0 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 MET F 1 REMARK 465 GLY F 2 REMARK 465 CYS F 3 REMARK 465 LEU F 4 REMARK 465 GLY F 5 REMARK 465 ASN F 6 REMARK 465 SER F 7 REMARK 465 LYS F 8 REMARK 465 THR F 9 REMARK 465 GLU F 10 REMARK 465 MET F 60 REMARK 465 ARG F 61 REMARK 465 ILE F 62 REMARK 465 LEU F 63 REMARK 465 HIS F 64 REMARK 465 VAL F 65 REMARK 465 ASN F 66 REMARK 465 GLY F 67 REMARK 465 PHE F 68 REMARK 465 ASN F 69 REMARK 465 GLY F 70 REMARK 465 GLU F 71 REMARK 465 GLY F 72 REMARK 465 GLY F 73 REMARK 465 GLU F 74 REMARK 465 GLU F 75 REMARK 465 ASP F 76 REMARK 465 PRO F 77 REMARK 465 GLN F 78 REMARK 465 ALA F 79 REMARK 465 ALA F 80 REMARK 465 ARG F 81 REMARK 465 SER F 82 REMARK 465 ASN F 83 REMARK 465 SER F 84 REMARK 465 ASP F 85 REMARK 465 GLY F 86 REMARK 465 GLU F 87 REMARK 465 LYS F 88 REMARK 465 ALA F 89 REMARK 465 THR F 90 REMARK 465 LYS F 91 REMARK 465 VAL F 92 REMARK 465 GLN F 93 REMARK 465 ASP F 94 REMARK 465 ILE F 95 REMARK 465 LYS F 96 REMARK 465 ASN F 97 REMARK 465 ASN F 98 REMARK 465 LEU F 99 REMARK 465 LYS F 100 REMARK 465 GLU F 101 REMARK 465 ALA F 102 REMARK 465 ILE F 103 REMARK 465 GLU F 104 REMARK 465 THR F 105 REMARK 465 ILE F 106 REMARK 465 VAL F 107 REMARK 465 ALA F 108 REMARK 465 ALA F 109 REMARK 465 MET F 110 REMARK 465 SER F 111 REMARK 465 ASN F 112 REMARK 465 LEU F 113 REMARK 465 VAL F 114 REMARK 465 PRO F 115 REMARK 465 PRO F 116 REMARK 465 VAL F 117 REMARK 465 GLU F 118 REMARK 465 LEU F 119 REMARK 465 ALA F 120 REMARK 465 ASN F 121 REMARK 465 PRO F 122 REMARK 465 GLU F 123 REMARK 465 ASN F 124 REMARK 465 GLN F 125 REMARK 465 PHE F 126 REMARK 465 ARG F 127 REMARK 465 VAL F 128 REMARK 465 ASP F 129 REMARK 465 TYR F 130 REMARK 465 ILE F 131 REMARK 465 LEU F 132 REMARK 465 SER F 133 REMARK 465 VAL F 134 REMARK 465 MET F 135 REMARK 465 ASN F 136 REMARK 465 VAL F 137 REMARK 465 PRO F 138 REMARK 465 ASP F 139 REMARK 465 PHE F 140 REMARK 465 ASP F 141 REMARK 465 PHE F 142 REMARK 465 PRO F 143 REMARK 465 PRO F 144 REMARK 465 GLU F 145 REMARK 465 PHE F 146 REMARK 465 TYR F 147 REMARK 465 GLU F 148 REMARK 465 HIS F 149 REMARK 465 ALA F 150 REMARK 465 LYS F 151 REMARK 465 ALA F 152 REMARK 465 LEU F 153 REMARK 465 TRP F 154 REMARK 465 GLU F 155 REMARK 465 ASP F 156 REMARK 465 GLU F 157 REMARK 465 GLY F 158 REMARK 465 VAL F 159 REMARK 465 ARG F 160 REMARK 465 ALA F 161 REMARK 465 CYS F 162 REMARK 465 TYR F 163 REMARK 465 GLU F 164 REMARK 465 ARG F 165 REMARK 465 SER F 166 REMARK 465 ASN F 167 REMARK 465 GLU F 168 REMARK 465 TYR F 169 REMARK 465 GLN F 170 REMARK 465 LEU F 171 REMARK 465 ILE F 172 REMARK 465 ASP F 173 REMARK 465 CYS F 174 REMARK 465 ALA F 175 REMARK 465 GLN F 176 REMARK 465 TYR F 177 REMARK 465 PHE F 178 REMARK 465 LEU F 179 REMARK 465 ASP F 180 REMARK 465 LYS F 181 REMARK 465 ILE F 182 REMARK 465 ASP F 183 REMARK 465 VAL F 184 REMARK 465 ILE F 185 REMARK 465 LYS F 186 REMARK 465 GLN F 187 REMARK 465 ALA F 188 REMARK 465 ASP F 189 REMARK 465 TYR F 190 REMARK 465 VAL F 191 REMARK 465 PRO F 192 REMARK 465 SER F 193 REMARK 465 ASP F 194 REMARK 465 GLN F 195 REMARK 465 ASP F 196 REMARK 465 LEU F 197 REMARK 465 LEU F 198 REMARK 465 ARG F 199 REMARK 465 CYS F 200 REMARK 465 ARG F 201 REMARK 465 VAL F 202 REMARK 465 LEU F 203 REMARK 465 THR F 204 REMARK 465 SER F 250 REMARK 465 SER F 251 REMARK 465 SER F 252 REMARK 465 TYR F 253 REMARK 465 ASN F 254 REMARK 465 MET F 255 REMARK 465 VAL F 256 REMARK 465 ILE F 257 REMARK 465 ARG F 258 REMARK 465 GLU F 259 REMARK 465 ASP F 260 REMARK 465 ASN F 261 REMARK 465 GLN F 262 REMARK 465 THR F 263 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 23 CG OD1 OD2 REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 PHE A 27 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 GLN A 31 CG CD OE1 NE2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 GLN A 39 CG CD OE1 NE2 REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 68 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 72 CG SD CE REMARK 470 MET A 111 CG SD CE REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 PHE A 220 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 350 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 129 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 300 CG CD CE NZ REMARK 470 THR F 369 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 296 CA - CB - SG ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 61 -63.17 -123.06 REMARK 500 ASP A 87 37.20 -96.56 REMARK 500 ASP A 137 56.47 -152.37 REMARK 500 ARG A 179 -10.97 70.55 REMARK 500 LEU A 181 36.15 -97.91 REMARK 500 HIS A 182 49.93 -92.26 REMARK 500 GLU A 213 12.82 57.58 REMARK 500 GLU A 257 75.46 -104.35 REMARK 500 ASP A 298 -54.80 -120.84 REMARK 500 MET A 299 60.81 -103.30 REMARK 500 THR A 303 -7.78 65.53 REMARK 500 LYS A 378 70.60 60.67 REMARK 500 VAL C 48 -60.90 -104.16 REMARK 500 ASN C 77 47.09 37.44 REMARK 500 THR C 113 60.28 62.54 REMARK 500 MET E 45 -168.05 -125.77 REMARK 500 ARG E 68 -39.93 -130.03 REMARK 500 THR E 128 58.84 32.38 REMARK 500 ASP E 153 -159.60 -135.56 REMARK 500 ASP E 163 41.26 -102.02 REMARK 500 THR E 164 -9.03 74.67 REMARK 500 PHE F 238 16.96 -141.98 REMARK 500 THR F 325 76.13 -117.11 REMARK 500 ASP F 354 64.00 62.32 REMARK 500 PHE F 363 116.65 -164.53 REMARK 500 LEU F 393 -62.81 -94.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 127 PRO A 128 146.56 REMARK 500 THR C 114 TYR C 115 148.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-30047 RELATED DB: EMDB REMARK 900 RELATED ID: 6M1H RELATED DB: PDB REMARK 900 RELATED ID: EMD-30048 RELATED DB: EMDB REMARK 900 PACAP38-PAC1R DBREF 6M1I A 18 444 PDB 6M1I 6M1I 18 444 DBREF 6M1I B 1 38 UNP P18509 PACA_HUMAN 132 169 DBREF 6M1I C 1 134 PDB 6M1I 6M1I 1 134 DBREF 6M1I D 1 71 UNP P59768 GBG2_HUMAN 1 71 DBREF 6M1I E 1 340 UNP P62873 GBB1_HUMAN 1 340 DBREF 6M1I F 1 394 PDB 6M1I 6M1I 1 394 SEQADV 6M1I GLY E 0 UNP P62873 EXPRESSION TAG SEQRES 1 A 406 ASP TYR LYS ASP ASP ASP ASP LYS ILE PHE LYS LYS GLU SEQRES 2 A 406 GLN ALA MET CYS LEU GLU LYS ILE GLN ARG ALA ASN GLU SEQRES 3 A 406 LEU MET GLY PHE ASN ASP SER SER PRO GLY CYS PRO GLY SEQRES 4 A 406 MET TRP ASP ASN ILE THR CYS TRP LYS PRO ALA HIS VAL SEQRES 5 A 406 GLY GLU MET VAL LEU VAL SER CYS PRO GLU LEU PHE ARG SEQRES 6 A 406 ILE PHE ASN PRO ASP GLN ASP MET GLY VAL VAL SER ARG SEQRES 7 A 406 ASN CYS THR GLU ASP GLY TRP SER GLU PRO PHE PRO HIS SEQRES 8 A 406 TYR PHE ASP ALA CYS GLY PHE ASP GLU TYR GLU SER GLU SEQRES 9 A 406 THR GLY ASP GLN ASP TYR TYR TYR LEU SER VAL LYS ALA SEQRES 10 A 406 LEU TYR THR VAL GLY TYR SER LEU SER LEU VAL ALA LEU SEQRES 11 A 406 LEU LEU ALA MET VAL ILE LEU CYS ARG PHE ARG LYS LEU SEQRES 12 A 406 HIS CYS THR ARG ASN PHE ILE HIS MET ASN LEU PHE VAL SEQRES 13 A 406 SER PHE MET LEU ARG ALA ILE SER VAL PHE ILE LYS ASP SEQRES 14 A 406 TRP ILE LEU TYR ALA GLU GLN ASP SER ASN HIS CYS PHE SEQRES 15 A 406 ILE SER THR VAL GLU CYS LYS ALA VAL MET VAL PHE PHE SEQRES 16 A 406 HIS TYR CYS VAL VAL SER ASN TYR PHE TRP LEU PHE ILE SEQRES 17 A 406 GLU GLY LEU TYR LEU PHE THR LEU LEU VAL GLU THR PHE SEQRES 18 A 406 PHE PRO GLU ARG ARG TYR PHE TYR TRP TYR THR ILE ILE SEQRES 19 A 406 GLY TRP GLY ALA PRO LEU VAL PHE VAL THR VAL TRP ALA SEQRES 20 A 406 THR LEU ARG LEU TYR PHE ASP ASP THR GLY CYS TRP ASP SEQRES 21 A 406 MET ASN ASP SER THR ALA LEU TRP TRP VAL ILE LYS GLY SEQRES 22 A 406 PRO VAL VAL GLY SER ILE MET VAL ASN PHE VAL LEU PHE SEQRES 23 A 406 ILE GLY ILE ILE VAL ILE LEU VAL GLN LYS LEU GLN SER SEQRES 24 A 406 PRO ASP MET GLY GLY ASN GLU SER SER ILE TYR LEU ARG SEQRES 25 A 406 LEU ALA ARG SER THR LEU LEU LEU ILE PRO LEU PHE GLY SEQRES 26 A 406 ILE HIS TYR THR VAL PHE ALA PHE SER PRO GLU ASN VAL SEQRES 27 A 406 SER LYS ARG GLU ARG LEU VAL PHE GLU LEU GLY LEU GLY SEQRES 28 A 406 SER PHE GLN GLY PHE VAL VAL ALA VAL LEU TYR CYS PHE SEQRES 29 A 406 LEU ASN GLY GLU VAL GLN ALA GLU ILE LYS ARG LYS TRP SEQRES 30 A 406 ARG SER TRP LYS VAL ASN ARG TYR PHE ALA VAL ASP PHE SEQRES 31 A 406 LYS HIS ARG HIS PRO SER LEU ALA SER SER LEU GLU VAL SEQRES 32 A 406 LEU PHE GLN SEQRES 1 B 38 HIS SER ASP GLY ILE PHE THR ASP SER TYR SER ARG TYR SEQRES 2 B 38 ARG LYS GLN MET ALA VAL LYS LYS TYR LEU ALA ALA VAL SEQRES 3 B 38 LEU GLY LYS ARG TYR LYS GLN ARG VAL LYS ASN LYS SEQRES 1 C 134 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 134 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 C 134 PHE THR PHE SER ASN TYR LYS MET ASN TRP VAL ARG GLN SEQRES 4 C 134 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER ASP ILE SER SEQRES 5 C 134 GLN SER GLY ALA SER ILE SER TYR THR GLY SER VAL LYS SEQRES 6 C 134 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 C 134 LEU TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 C 134 ALA VAL TYR TYR CYS ALA ARG CYS PRO ALA PRO PHE THR SEQRES 9 C 134 ARG ASP CYS PHE ASP VAL THR SER THR THR TYR ALA TYR SEQRES 10 C 134 ARG GLY GLN GLY THR GLN VAL THR VAL SER SER HIS HIS SEQRES 11 C 134 HIS HIS HIS HIS SEQRES 1 D 71 MET ALA SER ASN ASN THR ALA SER ILE ALA GLN ALA ARG SEQRES 2 D 71 LYS LEU VAL GLU GLN LEU LYS MET GLU ALA ASN ILE ASP SEQRES 3 D 71 ARG ILE LYS VAL SER LYS ALA ALA ALA ASP LEU MET ALA SEQRES 4 D 71 TYR CYS GLU ALA HIS ALA LYS GLU ASP PRO LEU LEU THR SEQRES 5 D 71 PRO VAL PRO ALA SER GLU ASN PRO PHE ARG GLU LYS LYS SEQRES 6 D 71 PHE PHE CYS ALA ILE LEU SEQRES 1 E 341 GLY MET SER GLU LEU ASP GLN LEU ARG GLN GLU ALA GLU SEQRES 2 E 341 GLN LEU LYS ASN GLN ILE ARG ASP ALA ARG LYS ALA CYS SEQRES 3 E 341 ALA ASP ALA THR LEU SER GLN ILE THR ASN ASN ILE ASP SEQRES 4 E 341 PRO VAL GLY ARG ILE GLN MET ARG THR ARG ARG THR LEU SEQRES 5 E 341 ARG GLY HIS LEU ALA LYS ILE TYR ALA MET HIS TRP GLY SEQRES 6 E 341 THR ASP SER ARG LEU LEU VAL SER ALA SER GLN ASP GLY SEQRES 7 E 341 LYS LEU ILE ILE TRP ASP SER TYR THR THR ASN LYS VAL SEQRES 8 E 341 HIS ALA ILE PRO LEU ARG SER SER TRP VAL MET THR CYS SEQRES 9 E 341 ALA TYR ALA PRO SER GLY ASN TYR VAL ALA CYS GLY GLY SEQRES 10 E 341 LEU ASP ASN ILE CYS SER ILE TYR ASN LEU LYS THR ARG SEQRES 11 E 341 GLU GLY ASN VAL ARG VAL SER ARG GLU LEU ALA GLY HIS SEQRES 12 E 341 THR GLY TYR LEU SER CYS CYS ARG PHE LEU ASP ASP ASN SEQRES 13 E 341 GLN ILE VAL THR SER SER GLY ASP THR THR CYS ALA LEU SEQRES 14 E 341 TRP ASP ILE GLU THR GLY GLN GLN THR THR THR PHE THR SEQRES 15 E 341 GLY HIS THR GLY ASP VAL MET SER LEU SER LEU ALA PRO SEQRES 16 E 341 ASP THR ARG LEU PHE VAL SER GLY ALA CYS ASP ALA SER SEQRES 17 E 341 ALA LYS LEU TRP ASP VAL ARG GLU GLY MET CYS ARG GLN SEQRES 18 E 341 THR PHE THR GLY HIS GLU SER ASP ILE ASN ALA ILE CYS SEQRES 19 E 341 PHE PHE PRO ASN GLY ASN ALA PHE ALA THR GLY SER ASP SEQRES 20 E 341 ASP ALA THR CYS ARG LEU PHE ASP LEU ARG ALA ASP GLN SEQRES 21 E 341 GLU LEU MET THR TYR SER HIS ASP ASN ILE ILE CYS GLY SEQRES 22 E 341 ILE THR SER VAL SER PHE SER LYS SER GLY ARG LEU LEU SEQRES 23 E 341 LEU ALA GLY TYR ASP ASP PHE ASN CYS ASN VAL TRP ASP SEQRES 24 E 341 ALA LEU LYS ALA ASP ARG ALA GLY VAL LEU ALA GLY HIS SEQRES 25 E 341 ASP ASN ARG VAL SER CYS LEU GLY VAL THR ASP ASP GLY SEQRES 26 E 341 MET ALA VAL ALA THR GLY SER TRP ASP SER PHE LEU LYS SEQRES 27 E 341 ILE TRP ASN SEQRES 1 F 394 MET GLY CYS LEU GLY ASN SER LYS THR GLU ASP GLN ARG SEQRES 2 F 394 ASN GLU GLU LYS ALA GLN ARG GLU ALA ASN LYS LYS ILE SEQRES 3 F 394 GLU LYS GLN LEU GLN LYS ASP LYS GLN VAL TYR ARG ALA SEQRES 4 F 394 THR HIS ARG LEU LEU LEU LEU GLY ALA GLY GLU SER GLY SEQRES 5 F 394 LYS ASN THR ILE VAL LYS GLN MET ARG ILE LEU HIS VAL SEQRES 6 F 394 ASN GLY PHE ASN GLY GLU GLY GLY GLU GLU ASP PRO GLN SEQRES 7 F 394 ALA ALA ARG SER ASN SER ASP GLY GLU LYS ALA THR LYS SEQRES 8 F 394 VAL GLN ASP ILE LYS ASN ASN LEU LYS GLU ALA ILE GLU SEQRES 9 F 394 THR ILE VAL ALA ALA MET SER ASN LEU VAL PRO PRO VAL SEQRES 10 F 394 GLU LEU ALA ASN PRO GLU ASN GLN PHE ARG VAL ASP TYR SEQRES 11 F 394 ILE LEU SER VAL MET ASN VAL PRO ASP PHE ASP PHE PRO SEQRES 12 F 394 PRO GLU PHE TYR GLU HIS ALA LYS ALA LEU TRP GLU ASP SEQRES 13 F 394 GLU GLY VAL ARG ALA CYS TYR GLU ARG SER ASN GLU TYR SEQRES 14 F 394 GLN LEU ILE ASP CYS ALA GLN TYR PHE LEU ASP LYS ILE SEQRES 15 F 394 ASP VAL ILE LYS GLN ALA ASP TYR VAL PRO SER ASP GLN SEQRES 16 F 394 ASP LEU LEU ARG CYS ARG VAL LEU THR SER GLY ILE PHE SEQRES 17 F 394 GLU THR LYS PHE GLN VAL ASP LYS VAL ASN PHE HIS MET SEQRES 18 F 394 PHE ASP VAL GLY ALA GLN ARG ASP GLU ARG ARG LYS TRP SEQRES 19 F 394 ILE GLN CYS PHE ASN ASP VAL THR ALA ILE ILE PHE VAL SEQRES 20 F 394 VAL ALA SER SER SER TYR ASN MET VAL ILE ARG GLU ASP SEQRES 21 F 394 ASN GLN THR ASN ARG LEU GLN ALA ALA LEU LYS LEU PHE SEQRES 22 F 394 ASP SER ILE TRP ASN ASN LYS TRP LEU ARG ASP THR SER SEQRES 23 F 394 VAL ILE LEU PHE LEU ASN LYS GLN ASP LEU LEU ALA GLU SEQRES 24 F 394 LYS VAL LEU ALA GLY LYS SER LYS ILE GLU ASP TYR PHE SEQRES 25 F 394 PRO GLU PHE ALA ARG TYR THR THR PRO GLU ASP ALA THR SEQRES 26 F 394 PRO GLU PRO GLY GLU ASP PRO ARG VAL THR ARG ALA LYS SEQRES 27 F 394 TYR PHE ILE ARG ASP GLU PHE LEU ARG ILE SER THR ALA SEQRES 28 F 394 SER GLY ASP GLY ARG HIS TYR CYS TYR PRO HIS PHE THR SEQRES 29 F 394 CYS ALA VAL ASP THR GLU ASN ILE ARG ARG VAL PHE ASN SEQRES 30 F 394 ASP CYS ARG ASP ILE ILE GLN ARG MET HIS LEU ARG GLN SEQRES 31 F 394 TYR GLU LEU LEU HELIX 1 AA1 LYS A 25 ALA A 41 1 17 HELIX 2 AA2 PRO A 78 ARG A 82 5 5 HELIX 3 AA3 ASP A 87 MET A 111 5 4 HELIX 4 AA4 HIS A 129 GLY A 135 1 7 HELIX 5 AA5 GLN A 146 LEU A 170 1 25 HELIX 6 AA6 LEU A 170 CYS A 176 1 7 HELIX 7 AA7 ARG A 185 ILE A 209 1 25 HELIX 8 AA8 GLN A 214 CYS A 219 1 6 HELIX 9 AA9 VAL A 224 SER A 239 1 16 HELIX 10 AB1 LEU A 244 LEU A 254 1 11 HELIX 11 AB2 PRO A 261 THR A 286 1 26 HELIX 12 AB3 LEU A 305 ILE A 309 5 5 HELIX 13 AB4 LYS A 310 VAL A 329 1 20 HELIX 14 AB5 VAL A 329 GLN A 336 1 8 HELIX 15 AB6 ILE A 347 LEU A 351 1 5 HELIX 16 AB7 LEU A 351 LEU A 356 1 6 HELIX 17 AB8 LEU A 358 GLY A 363 1 6 HELIX 18 AB9 ILE A 364 ALA A 370 5 7 HELIX 19 AC1 PRO A 373 LYS A 378 1 6 HELIX 20 AC2 GLU A 380 LEU A 388 1 9 HELIX 21 AC3 PHE A 391 TYR A 400 1 10 HELIX 22 AC4 VAL A 407 LYS A 419 1 13 HELIX 23 AC5 SER B 2 ALA B 24 1 23 HELIX 24 AC6 THR C 28 TYR C 32 5 5 HELIX 25 AC7 GLY C 62 LYS C 65 5 4 HELIX 26 AC8 LYS C 87 THR C 91 5 5 HELIX 27 AC9 ALA D 7 GLU D 22 1 16 HELIX 28 AD1 LYS D 29 HIS D 44 1 16 HELIX 29 AD2 LEU E 4 ALA E 26 1 23 HELIX 30 AD3 THR E 29 THR E 34 1 6 HELIX 31 AD4 ARG F 13 ARG F 38 1 26 HELIX 32 AD5 GLY F 49 GLN F 59 1 11 HELIX 33 AD6 ARG F 265 ASN F 278 1 14 HELIX 34 AD7 GLN F 294 GLU F 299 1 6 HELIX 35 AD8 ASP F 331 THR F 350 1 20 HELIX 36 AD9 GLU F 370 GLN F 390 1 21 SHEET 1 AA1 2 MET A 72 SER A 76 0 SHEET 2 AA1 2 VAL A 113 ASN A 117 -1 O ARG A 116 N VAL A 73 SHEET 1 AA2 4 GLN C 5 GLY C 8 0 SHEET 2 AA2 4 SER C 17 ALA C 23 -1 O ALA C 23 N GLN C 5 SHEET 3 AA2 4 THR C 78 ASN C 84 -1 O MET C 83 N LEU C 18 SHEET 4 AA2 4 PHE C 68 ASP C 73 -1 N SER C 71 O TYR C 80 SHEET 1 AA3 5 ILE C 58 TYR C 60 0 SHEET 2 AA3 5 LEU C 45 ILE C 51 -1 N ASP C 50 O SER C 59 SHEET 3 AA3 5 MET C 34 GLN C 39 -1 N MET C 34 O ILE C 51 SHEET 4 AA3 5 ALA C 92 ARG C 98 -1 O TYR C 95 N VAL C 37 SHEET 5 AA3 5 THR C 122 VAL C 124 -1 O THR C 122 N TYR C 94 SHEET 1 AA4 4 ARG E 46 LEU E 51 0 SHEET 2 AA4 4 LEU E 336 ASN E 340 -1 O ILE E 338 N ARG E 48 SHEET 3 AA4 4 VAL E 327 SER E 331 -1 N VAL E 327 O TRP E 339 SHEET 4 AA4 4 VAL E 315 VAL E 320 -1 N SER E 316 O GLY E 330 SHEET 1 AA5 4 ILE E 58 HIS E 62 0 SHEET 2 AA5 4 LEU E 69 SER E 74 -1 O ALA E 73 N ALA E 60 SHEET 3 AA5 4 LYS E 78 ASP E 83 -1 O TRP E 82 N LEU E 70 SHEET 4 AA5 4 ASN E 88 PRO E 94 -1 O ILE E 93 N LEU E 79 SHEET 1 AA6 4 VAL E 100 TYR E 105 0 SHEET 2 AA6 4 TYR E 111 GLY E 116 -1 O ALA E 113 N ALA E 104 SHEET 3 AA6 4 CYS E 121 ASN E 125 -1 O TYR E 124 N VAL E 112 SHEET 4 AA6 4 VAL E 135 LEU E 139 -1 O LEU E 139 N CYS E 121 SHEET 1 AA7 4 LEU E 146 PHE E 151 0 SHEET 2 AA7 4 ILE E 157 SER E 161 -1 O SER E 160 N CYS E 148 SHEET 3 AA7 4 CYS E 166 ASP E 170 -1 O ALA E 167 N THR E 159 SHEET 4 AA7 4 GLN E 175 PHE E 180 -1 O THR E 177 N LEU E 168 SHEET 1 AA8 4 VAL E 187 LEU E 192 0 SHEET 2 AA8 4 PHE E 199 ALA E 203 -1 O GLY E 202 N MET E 188 SHEET 3 AA8 4 SER E 207 TRP E 211 -1 O TRP E 211 N PHE E 199 SHEET 4 AA8 4 CYS E 218 THR E 223 -1 O ARG E 219 N LEU E 210 SHEET 1 AA9 4 ILE E 229 PHE E 234 0 SHEET 2 AA9 4 ALA E 240 SER E 245 -1 O GLY E 244 N ALA E 231 SHEET 3 AA9 4 CYS E 250 ASP E 254 -1 O PHE E 253 N PHE E 241 SHEET 4 AA9 4 GLN E 259 TYR E 264 -1 O TYR E 264 N CYS E 250 SHEET 1 AB1 4 SER E 275 PHE E 278 0 SHEET 2 AB1 4 LEU E 284 GLY E 288 -1 O LEU E 286 N SER E 277 SHEET 3 AB1 4 CYS E 294 ASP E 298 -1 O TRP E 297 N LEU E 285 SHEET 4 AB1 4 ARG E 304 LEU E 308 -1 O LEU E 308 N CYS E 294 SHEET 1 AB2 6 ILE F 207 VAL F 214 0 SHEET 2 AB2 6 VAL F 217 VAL F 224 -1 O MET F 221 N THR F 210 SHEET 3 AB2 6 THR F 40 LEU F 45 1 N HIS F 41 O ASN F 218 SHEET 4 AB2 6 ALA F 243 PHE F 246 1 O ILE F 245 N LEU F 44 SHEET 5 AB2 6 SER F 286 PHE F 290 1 O ILE F 288 N ILE F 244 SHEET 6 AB2 6 CYS F 359 HIS F 362 1 O TYR F 360 N LEU F 289 SSBOND 1 CYS A 34 CYS A 63 1555 1555 2.03 SSBOND 2 CYS A 54 CYS A 118 1555 1555 2.03 SSBOND 3 CYS A 226 CYS A 296 1555 1555 2.04 SSBOND 4 CYS C 22 CYS C 96 1555 1555 2.03 SSBOND 5 CYS C 99 CYS C 107 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000