PDB Short entry for 6M2Q HEADER VIRAL PROTEIN 28-FEB-20 6M2Q TITLE SARS-COV-2 3CL PROTEASE (3CL PRO) APO STRUCTURE (SPACE GROUP C21) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3CL-PRO, 3CLP, MAIN PROTEASE, MPRO, NON-STRUCTURAL PROTEIN COMPND 5 5, NSP5, SARS CORONAVIRUS MAIN PROTEINASE; COMPND 6 EC: 3.4.22.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS SARS-COV-2, 3CL PRO, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.X.SU,W.F.ZHAO,M.J.LI,H.XIE,Y.C.XU REVDAT 4 29-NOV-23 6M2Q 1 REMARK REVDAT 3 03-FEB-21 6M2Q 1 COMPND SOURCE DBREF REVDAT 2 28-OCT-20 6M2Q 1 JRNL REVDAT 1 15-APR-20 6M2Q 0 JRNL AUTH H.X.SU,S.YAO,W.F.ZHAO,M.J.LI,J.LIU,W.J.SHANG,H.XIE,C.Q.KE, JRNL AUTH 2 H.C.HU,M.N.GAO,K.Q.YU,H.LIU,J.S.SHEN,W.TANG,L.K.ZHANG, JRNL AUTH 3 G.F.XIAO,L.NI,D.W.WANG,J.P.ZUO,H.L.JIANG,F.BAI,Y.WU,Y.YE, JRNL AUTH 4 Y.C.XU JRNL TITL ANTI-SARS-COV-2 ACTIVITIES IN VITRO OF SHUANGHUANGLIAN JRNL TITL 2 PREPARATIONS AND BIOACTIVE INGREDIENTS. JRNL REF ACTA PHARMACOL.SIN. V. 41 1167 2020 JRNL REFN ESSN 1745-7254 JRNL PMID 32737471 JRNL DOI 10.1038/S41401-020-0483-6 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 29169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4230 - 3.6610 1.00 2877 154 0.1462 0.1651 REMARK 3 2 3.6610 - 2.9061 1.00 2788 174 0.1639 0.1879 REMARK 3 3 2.9061 - 2.5389 1.00 2788 142 0.1864 0.2158 REMARK 3 4 2.5389 - 2.3068 0.99 2799 141 0.1885 0.2490 REMARK 3 5 2.3068 - 2.1415 0.99 2774 126 0.1858 0.2044 REMARK 3 6 2.1415 - 2.0152 0.99 2750 150 0.1881 0.2322 REMARK 3 7 2.0152 - 1.9143 0.99 2727 146 0.2028 0.2488 REMARK 3 8 1.9143 - 1.8310 0.98 2780 138 0.2258 0.2737 REMARK 3 9 1.8310 - 1.7605 0.98 2738 119 0.2363 0.2591 REMARK 3 10 1.7605 - 1.7000 0.98 2702 156 0.2548 0.3158 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2411 REMARK 3 ANGLE : 0.680 3283 REMARK 3 CHIRALITY : 0.045 374 REMARK 3 PLANARITY : 0.005 427 REMARK 3 DIHEDRAL : 12.639 1422 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 114.1290 -24.9040 53.5999 REMARK 3 T TENSOR REMARK 3 T11: 0.2087 T22: 0.1359 REMARK 3 T33: 0.1880 T12: 0.0296 REMARK 3 T13: 0.0048 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.3976 L22: 1.9604 REMARK 3 L33: 2.9191 L12: -0.4941 REMARK 3 L13: 1.8091 L23: -1.0631 REMARK 3 S TENSOR REMARK 3 S11: 0.2683 S12: -0.0843 S13: -0.3093 REMARK 3 S21: -0.1705 S22: -0.0031 S23: 0.1505 REMARK 3 S31: 0.6407 S32: 0.0299 S33: -0.2356 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 122.0433 -26.4620 70.9084 REMARK 3 T TENSOR REMARK 3 T11: 0.3742 T22: 0.3207 REMARK 3 T33: 0.2957 T12: 0.0324 REMARK 3 T13: -0.0210 T23: 0.0494 REMARK 3 L TENSOR REMARK 3 L11: 4.2901 L22: 2.2043 REMARK 3 L33: 3.1100 L12: 3.4697 REMARK 3 L13: 0.9256 L23: 1.5548 REMARK 3 S TENSOR REMARK 3 S11: 0.1941 S12: -0.5502 S13: -0.1917 REMARK 3 S21: 0.2369 S22: -0.1452 S23: 0.1202 REMARK 3 S31: 0.4935 S32: -0.1619 S33: -0.0272 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 119.9788 -34.4575 58.0941 REMARK 3 T TENSOR REMARK 3 T11: 0.4143 T22: 0.2246 REMARK 3 T33: 0.2975 T12: 0.0658 REMARK 3 T13: -0.0244 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 1.8410 L22: 4.0071 REMARK 3 L33: 3.6446 L12: -0.1517 REMARK 3 L13: 1.5860 L23: 0.1842 REMARK 3 S TENSOR REMARK 3 S11: 0.3381 S12: -0.1194 S13: -0.5004 REMARK 3 S21: 0.0841 S22: -0.1444 S23: 0.0844 REMARK 3 S31: 0.8724 S32: -0.0128 S33: -0.1723 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 117.6652 -16.8780 51.3439 REMARK 3 T TENSOR REMARK 3 T11: 0.1240 T22: 0.1397 REMARK 3 T33: 0.1354 T12: 0.0215 REMARK 3 T13: -0.0005 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.9550 L22: 4.3854 REMARK 3 L33: 3.8573 L12: 0.7861 REMARK 3 L13: 1.4688 L23: 0.0575 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: -0.0059 S13: 0.0009 REMARK 3 S21: -0.2002 S22: 0.0356 S23: 0.0461 REMARK 3 S31: 0.1355 S32: 0.2988 S33: -0.0237 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 121.2359 -5.1385 48.5617 REMARK 3 T TENSOR REMARK 3 T11: 0.1978 T22: 0.1818 REMARK 3 T33: 0.1727 T12: -0.0742 REMARK 3 T13: 0.0040 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.5398 L22: 1.5331 REMARK 3 L33: 3.9928 L12: -0.5965 REMARK 3 L13: 1.3777 L23: -1.9544 REMARK 3 S TENSOR REMARK 3 S11: -0.1944 S12: 0.1313 S13: 0.1668 REMARK 3 S21: 0.2638 S22: -0.1045 S23: -0.2014 REMARK 3 S31: -0.6246 S32: 0.4699 S33: 0.2970 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 120.6189 8.2712 32.5347 REMARK 3 T TENSOR REMARK 3 T11: 0.4467 T22: 0.4006 REMARK 3 T33: 0.3225 T12: -0.1693 REMARK 3 T13: -0.0491 T23: 0.1345 REMARK 3 L TENSOR REMARK 3 L11: 4.3648 L22: 2.5366 REMARK 3 L33: 2.2462 L12: 0.4300 REMARK 3 L13: -0.5922 L23: 0.2127 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: 0.3593 S13: 0.3607 REMARK 3 S21: -0.1260 S22: -0.0591 S23: -0.3966 REMARK 3 S31: -0.5680 S32: 0.2574 S33: 0.0233 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 237 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 122.7014 2.7076 32.5981 REMARK 3 T TENSOR REMARK 3 T11: 0.2831 T22: 0.4181 REMARK 3 T33: 0.2453 T12: -0.1659 REMARK 3 T13: -0.0276 T23: 0.0800 REMARK 3 L TENSOR REMARK 3 L11: 3.2495 L22: 1.9882 REMARK 3 L33: 3.7150 L12: -0.7030 REMARK 3 L13: -0.4602 L23: 0.6643 REMARK 3 S TENSOR REMARK 3 S11: -0.1150 S12: 0.6655 S13: 0.3892 REMARK 3 S21: -0.0856 S22: 0.0747 S23: -0.1663 REMARK 3 S31: -0.4506 S32: 0.3871 S33: 0.0602 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 112.0051 -4.7814 36.0649 REMARK 3 T TENSOR REMARK 3 T11: 0.1538 T22: 0.2652 REMARK 3 T33: 0.1449 T12: -0.0938 REMARK 3 T13: 0.0205 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 5.8877 L22: 6.6896 REMARK 3 L33: 6.4397 L12: -2.8076 REMARK 3 L13: -0.7752 L23: 1.9895 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: 0.3812 S13: -0.1270 REMARK 3 S21: 0.0337 S22: -0.2886 S23: 0.3180 REMARK 3 S31: 0.2439 S32: -0.2800 S33: 0.2236 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M2Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300015957. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29174 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.90100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 6LU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES, PH5.8, 10% PEG6000, 3% REMARK 280 DMSO, 1MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.43400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.43400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 212.29297 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.69201 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 460 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 565 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 575 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 ASN A 72 CG OD1 ND2 REMARK 470 TYR A 154 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 221 CG OD1 ND2 REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -130.06 52.32 REMARK 500 ASN A 51 68.67 -161.95 REMARK 500 ASN A 84 -117.22 53.56 REMARK 500 TYR A 154 -104.85 55.46 REMARK 500 REMARK 500 REMARK: NULL DBREF 6M2Q A 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN FORMUL 2 HOH *223(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 GLU A 47 ASN A 51 5 5 HELIX 4 AA4 ASN A 53 ARG A 60 1 8 HELIX 5 AA5 SER A 62 HIS A 64 5 3 HELIX 6 AA6 ILE A 200 ASN A 214 1 15 HELIX 7 AA7 THR A 226 TYR A 237 1 12 HELIX 8 AA8 THR A 243 LEU A 250 1 8 HELIX 9 AA9 LEU A 250 GLY A 258 1 9 HELIX 10 AB1 ALA A 260 GLY A 275 1 16 HELIX 11 AB2 THR A 292 GLY A 302 1 11 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N VAL A 68 O LEU A 75 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 89 N VAL A 36 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N SER A 81 O LYS A 88 SHEET 1 AA2 5 LYS A 100 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N ASN A 151 O SER A 158 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116 SHEET 1 AA3 3 LYS A 100 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 CRYST1 114.868 53.600 44.705 90.00 101.25 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008706 0.000000 0.001731 0.00000 SCALE2 0.000000 0.018657 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022807 0.00000