PDB Full entry for 6M7M HEADER PROTEIN FIBRIL 20-AUG-18 6M7M TITLE RAC-GSTSTA FROM DEGENERATE OCTAMERIC REPEATS IN INAZ, RESIDUES 707-712 COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-GSTSTA FROM ICE NUCLEATION PROTEIN, INAZ, AND ITS COMPND 3 ENANTIOMER, D-GSTSTA; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 707-712; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: PSEUDOMONAS SYRINGAE; SOURCE 4 ORGANISM_TAXID: 317; SOURCE 5 OTHER_DETAILS: SYNTHETIC PEPTIDE L-GSTSTA CORRESPONDING TO SEGMENT SOURCE 6 707-712 OF INAZ, AND ITS ENANTIOMER, D-GSTSTA KEYWDS AMYLOID, RACEMIC, ICE NUCLEATION, MICROED, INAZ, PSEUDOMONAS KEYWDS 2 SYRINGAE, PROTEIN FIBRIL EXPDTA X-RAY DIFFRACTION AUTHOR C.ZEE,C.GLYNN,M.GALLAGHER-JONES,J.MIAO,C.G.SANTIAGO,D.CASCIO,T.GONEN, AUTHOR 2 M.R.SAWAYA,J.A.RODRIGUEZ REVDAT 3 15-JAN-20 6M7M 1 REMARK REVDAT 2 04-DEC-19 6M7M 1 REMARK REVDAT 1 03-APR-19 6M7M 0 JRNL AUTH C.T.ZEE,C.GLYNN,M.GALLAGHER-JONES,J.MIAO,C.G.SANTIAGO, JRNL AUTH 2 D.CASCIO,T.GONEN,M.R.SAWAYA,J.A.RODRIGUEZ JRNL TITL HOMOCHIRAL AND RACEMIC MICROED STRUCTURES OF A PEPTIDE JRNL TITL 2 REPEAT FROM THE ICE-NUCLEATION PROTEIN INAZ. JRNL REF IUCRJ V. 6 197 2019 JRNL REFN ESSN 2052-2525 JRNL PMID 30867917 JRNL DOI 10.1107/S2052252518017621 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 2078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.870 REMARK 3 FREE R VALUE TEST SET COUNT : 205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 1.1515 - 1.1014 0.83 206 23 0.3313 0.3349 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 35 REMARK 3 ANGLE : 0.769 47 REMARK 3 CHIRALITY : 0.062 7 REMARK 3 PLANARITY : 0.003 6 REMARK 3 DIHEDRAL : 5.182 10 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M7M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2097 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 14.466 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 2.852 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.39 REMARK 200 R MERGE FOR SHELL (I) : 0.19300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE PH 8.0, 10% (W/V) OF REMARK 280 PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21/c 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z+1/2 REMARK 290 3555 -X,-Y,-Z REMARK 290 4555 X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 -3.29412 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 4.64500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 10.00148 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 -3.29412 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 4.64500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 10.00148 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6EEX RELATED DB: PDB DBREF 6M7M A 707 712 PDB 6M7M 6M7M 707 712 SEQRES 1 A 6 GLY SER THR SER THR ALA FORMUL 2 HOH *4(H2 O) CRYST1 15.230 9.290 21.060 90.00 108.23 90.00 P 1 21/c 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.065660 0.000000 0.021621 0.00000 SCALE2 0.000000 0.107643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.049991 0.00000 ATOM 1 N GLY A 707 1.534 7.554 -3.387 1.00 11.13 N ANISOU 1 N GLY A 707 1412 1404 1411 -1 -8 0 N ATOM 2 CA GLY A 707 1.834 8.277 -2.163 1.00 11.22 C ANISOU 2 CA GLY A 707 1423 1461 1380 0 43 0 C ATOM 3 C GLY A 707 2.732 7.484 -1.249 1.00 9.20 C ANISOU 3 C GLY A 707 1168 1144 1184 1 -24 2 C ATOM 4 O GLY A 707 2.923 6.290 -1.436 1.00 8.84 O ANISOU 4 O GLY A 707 1121 1114 1125 -2 -7 -2 O ATOM 5 HA2 GLY A 707 2.274 9.114 -2.379 1.00 13.47 H ATOM 6 HA3 GLY A 707 1.009 8.474 -1.692 1.00 13.47 H ATOM 7 N SER A 708 3.278 8.154 -0.238 1.00 8.47 N ANISOU 7 N SER A 708 1073 1067 1081 -1 -10 1 N ATOM 8 CA SER A 708 4.152 7.494 0.712 1.00 8.30 C ANISOU 8 CA SER A 708 1051 1015 1087 -1 -41 1 C ATOM 9 C SER A 708 4.026 8.175 2.058 1.00 7.64 C ANISOU 9 C SER A 708 965 964 973 0 -4 -1 C ATOM 10 O SER A 708 3.701 9.359 2.144 1.00 8.10 O ANISOU 10 O SER A 708 1031 1033 1016 -1 8 -2 O ATOM 11 CB SER A 708 5.621 7.534 0.263 1.00 10.62 C ANISOU 11 CB SER A 708 1346 1350 1338 0 8 0 C ATOM 12 OG SER A 708 6.140 8.849 0.343 1.00 12.61 O ANISOU 12 OG SER A 708 1600 1629 1561 -5 40 -2 O ATOM 13 H SER A 708 3.155 8.991 -0.084 1.00 10.17 H ATOM 14 HA SER A 708 3.885 6.566 0.809 1.00 9.96 H ATOM 15 HB2 SER A 708 6.143 6.954 0.839 1.00 12.74 H ATOM 16 HB3 SER A 708 5.679 7.228 -0.655 1.00 12.74 H ATOM 17 HG SER A 708 6.096 9.127 1.135 1.00 15.13 H ATOM 18 N THR A 709 4.301 7.412 3.105 1.00 6.87 N ANISOU 18 N THR A 709 867 852 891 0 -20 1 N ATOM 19 CA THR A 709 4.349 7.926 4.468 1.00 7.23 C ANISOU 19 CA THR A 709 913 891 941 -2 -28 0 C ATOM 20 C THR A 709 5.503 7.250 5.174 1.00 7.64 C ANISOU 20 C THR A 709 967 971 965 0 4 0 C ATOM 21 O THR A 709 5.544 6.018 5.239 1.00 8.44 O ANISOU 21 O THR A 709 1071 1080 1056 -1 12 -1 O ATOM 22 CB THR A 709 3.051 7.609 5.221 1.00 8.51 C ANISOU 22 CB THR A 709 1078 1058 1097 0 -23 2 C ATOM 23 OG1 THR A 709 1.933 8.091 4.460 1.00 9.87 O ANISOU 23 OG1 THR A 709 1250 1276 1225 1 30 1 O ATOM 24 CG2 THR A 709 3.061 8.225 6.602 1.00 9.39 C ANISOU 24 CG2 THR A 709 1190 1204 1173 0 22 0 C ATOM 25 H THR A 709 4.468 6.571 3.052 1.00 8.25 H ATOM 26 HA THR A 709 4.493 8.885 4.463 1.00 8.67 H ATOM 27 HB THR A 709 2.972 6.648 5.322 1.00 10.21 H ATOM 28 HG1 THR A 709 1.216 7.922 4.864 1.00 11.85 H ATOM 29 HG21 THR A 709 2.234 8.015 7.064 1.00 11.27 H ATOM 30 HG22 THR A 709 3.806 7.875 7.116 1.00 11.27 H ATOM 31 HG23 THR A 709 3.149 9.189 6.535 1.00 11.27 H ATOM 32 N SER A 710 6.420 8.041 5.715 1.00 7.17 N ANISOU 32 N SER A 710 908 892 924 -1 -20 -1 N ATOM 33 CA SER A 710 7.587 7.515 6.408 1.00 7.61 C ANISOU 33 CA SER A 710 962 938 993 -1 -32 0 C ATOM 34 C SER A 710 7.717 8.197 7.756 1.00 7.45 C ANISOU 34 C SER A 710 941 947 944 -1 0 0 C ATOM 35 O SER A 710 7.477 9.399 7.875 1.00 7.38 O ANISOU 35 O SER A 710 935 934 935 -1 -4 -2 O ATOM 36 CB SER A 710 8.859 7.772 5.604 1.00 9.73 C ANISOU 36 CB SER A 710 1232 1210 1256 2 -29 0 C ATOM 37 OG SER A 710 8.741 7.185 4.342 1.00 13.03 O ANISOU 37 OG SER A 710 1654 1708 1590 3 70 0 O ATOM 38 H SER A 710 6.388 8.900 5.693 1.00 8.61 H ATOM 39 HA SER A 710 7.488 6.560 6.546 1.00 9.14 H ATOM 40 HB2 SER A 710 8.985 8.729 5.501 1.00 11.68 H ATOM 41 HB3 SER A 710 9.616 7.383 6.069 1.00 11.68 H ATOM 42 HG SER A 710 9.438 7.323 3.894 1.00 15.64 H ATOM 43 N THR A 711 8.121 7.425 8.758 1.00 7.44 N ANISOU 43 N THR A 711 942 935 949 1 -8 -1 N ATOM 44 CA THR A 711 8.367 7.948 10.090 1.00 7.82 C ANISOU 44 CA THR A 711 988 978 1006 -1 -18 -1 C ATOM 45 C THR A 711 9.692 7.418 10.602 1.00 8.10 C ANISOU 45 C THR A 711 1025 1014 1037 2 -13 -1 C ATOM 46 O THR A 711 10.129 6.333 10.229 1.00 8.94 O ANISOU 46 O THR A 711 1133 1147 1117 3 15 -3 O ATOM 47 CB THR A 711 7.255 7.538 11.081 1.00 8.78 C ANISOU 47 CB THR A 711 1114 1089 1134 0 -25 0 C ATOM 48 OG1 THR A 711 7.251 6.115 11.225 1.00 10.42 O ANISOU 48 OG1 THR A 711 1322 1347 1290 1 38 4 O ATOM 49 CG2 THR A 711 5.880 8.003 10.608 1.00 9.17 C ANISOU 49 CG2 THR A 711 1161 1169 1154 0 10 -1 C ATOM 50 H THR A 711 8.261 6.579 8.688 1.00 8.93 H ATOM 51 HA THR A 711 8.412 8.916 10.057 1.00 9.39 H ATOM 52 HB THR A 711 7.432 7.945 11.944 1.00 10.54 H ATOM 53 HG1 THR A 711 6.649 5.882 11.763 1.00 12.51 H ATOM 54 HG21 THR A 711 5.201 7.733 11.247 1.00 11.01 H ATOM 55 HG22 THR A 711 5.867 8.969 10.524 1.00 11.01 H ATOM 56 HG23 THR A 711 5.675 7.608 9.746 1.00 11.01 H ATOM 57 N ALA A 712 10.304 8.188 11.486 1.00 8.18 N ANISOU 57 N ALA A 712 1031 1017 1059 1 -25 2 N ATOM 58 CA ALA A 712 11.507 7.777 12.203 1.00 9.52 C ANISOU 58 CA ALA A 712 1205 1164 1247 0 -50 2 C ATOM 59 C ALA A 712 11.525 8.433 13.564 1.00 10.52 C ANISOU 59 C ALA A 712 1331 1320 1346 1 -17 1 C ATOM 60 O ALA A 712 12.183 7.919 14.485 1.00 11.47 O ANISOU 60 O ALA A 712 1453 1472 1433 6 17 2 O ATOM 61 CB ALA A 712 12.736 8.194 11.445 1.00 11.98 C ANISOU 61 CB ALA A 712 1518 1562 1471 1 52 2 C ATOM 62 OXT ALA A 712 10.902 9.490 13.764 1.00 11.28 O ANISOU 62 OXT ALA A 712 1431 1441 1413 1 14 -1 O ATOM 63 H ALA A 712 10.035 8.978 11.696 1.00 9.82 H ATOM 64 HA ALA A 712 11.515 6.814 12.316 1.00 11.42 H ATOM 65 HB1 ALA A 712 13.522 7.912 11.938 1.00 14.38 H ATOM 66 HB2 ALA A 712 12.725 7.773 10.571 1.00 14.38 H ATOM 67 HB3 ALA A 712 12.734 9.159 11.348 1.00 14.38 H TER 68 ALA A 712 HETATM 69 O HOH A 801 7.748 9.193 2.619 1.00 14.14 O ANISOU 69 O HOH A 801 1791 1790 1789 -4 0 -1 O HETATM 70 O HOH A 802 10.871 5.547 7.542 1.00 15.52 O ANISOU 70 O HOH A 802 1964 1965 1966 1 2 0 O HETATM 71 O HOH A 803 11.909 7.903 3.832 1.00 16.59 O ANISOU 71 O HOH A 803 2102 2101 2100 -3 1 -4 O HETATM 72 O HOH A 804 11.677 5.374 4.717 1.00 14.16 O ANISOU 72 O HOH A 804 1792 1795 1794 -6 -1 -3 O MASTER 190 0 0 0 0 0 0 6 40 1 0 1 END