PDB Short entry for 6M92 HEADER LIGASE 22-AUG-18 6M92 TITLE MONOPHOSPHORYLATED PSER33 B-CATENIN PEPTIDE, B-TRCP/SKP1, NRX-2663 TITLE 2 TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: F-BOX/WD REPEAT-CONTAINING PROTEIN 1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: E3RSIKAPPAB,EPIDIDYMIS TISSUE PROTEIN LI 2A,F-BOX AND WD COMPND 5 REPEATS PROTEIN BETA-TRCP,PIKAPPABALPHA-E3 RECEPTOR SUBUNIT; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: S-PHASE KINASE-ASSOCIATED PROTEIN 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: CYCLIN-A/CDK2-ASSOCIATED PROTEIN P19,P19A,ORGAN OF CORTI COMPND 11 PROTEIN 2,OCP-2,ORGAN OF CORTI PROTEIN II,OCP-II,RNA POLYMERASE II COMPND 12 ELONGATION FACTOR-LIKE PROTEIN,SIII,TRANSCRIPTION ELONGATION FACTOR B COMPND 13 POLYPEPTIDE 1-LIKE,P19SKP1; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: CATENIN BETA-1; COMPND 17 CHAIN: C; COMPND 18 SYNONYM: BETA-CATENIN; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BTRC, BTRCP, FBW1A, FBXW1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SKP1, EMC19, OCP2, SKP1A, TCEB1L; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS UBIQUITIN MOLECULAR GLUE ENHANCER, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR K.R.SIMONETTA,M.C.CLIFTON,R.L.WALTER,G.M.RANIERI,J.J.CARTER,S.J.LEE REVDAT 3 15-JAN-20 6M92 1 REMARK REVDAT 2 10-APR-19 6M92 1 JRNL REVDAT 1 03-APR-19 6M92 0 JRNL AUTH K.R.SIMONETTA,J.TAYGERLY,K.BOYLE,S.E.BASHAM,C.PADOVANI, JRNL AUTH 2 Y.LOU,T.J.CUMMINS,S.L.YUNG,S.K.VON SOLY,F.KAYSER,J.KURIYAN, JRNL AUTH 3 M.RAPE,M.CARDOZO,M.A.GALLOP,N.F.BENCE,P.A.BARSANTI,A.SAHA JRNL TITL PROSPECTIVE DISCOVERY OF SMALL MOLECULE ENHANCERS OF AN E3 JRNL TITL 2 LIGASE-SUBSTRATE INTERACTION. JRNL REF NAT COMMUN V. 10 1402 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30926793 JRNL DOI 10.1038/S41467-019-09358-9 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3014 - 4.8858 0.99 3730 149 0.1703 0.1865 REMARK 3 2 4.8858 - 3.8789 1.00 3780 144 0.1563 0.1804 REMARK 3 3 3.8789 - 3.3889 1.00 3787 134 0.1923 0.2384 REMARK 3 4 3.3889 - 3.0791 1.00 3774 142 0.2111 0.2605 REMARK 3 5 3.0791 - 2.8585 1.00 3769 154 0.2174 0.2861 REMARK 3 6 2.8585 - 2.6900 1.00 3759 149 0.2204 0.2556 REMARK 3 7 2.6900 - 2.5553 1.00 3778 146 0.2570 0.3079 REMARK 3 8 2.5553 - 2.4441 1.00 3779 156 0.2859 0.3471 REMARK 3 9 2.4441 - 2.3500 1.00 3748 156 0.3158 0.3381 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7738 -3.1735 10.4869 REMARK 3 T TENSOR REMARK 3 T11: 1.0459 T22: 0.6035 REMARK 3 T33: 0.8397 T12: 0.2995 REMARK 3 T13: -0.0291 T23: 0.0562 REMARK 3 L TENSOR REMARK 3 L11: 2.1940 L22: 2.8224 REMARK 3 L33: 0.6270 L12: -1.1679 REMARK 3 L13: 0.9446 L23: -0.2373 REMARK 3 S TENSOR REMARK 3 S11: 0.1439 S12: 0.0252 S13: 0.1613 REMARK 3 S21: 0.0089 S22: -0.1863 S23: 0.5022 REMARK 3 S31: 0.2205 S32: 0.0274 S33: 0.0535 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 547 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8315 31.1268 0.7762 REMARK 3 T TENSOR REMARK 3 T11: 0.5529 T22: 0.5466 REMARK 3 T33: 0.6103 T12: 0.1935 REMARK 3 T13: -0.0684 T23: -0.0481 REMARK 3 L TENSOR REMARK 3 L11: 1.9780 L22: 3.2219 REMARK 3 L33: 2.5691 L12: 0.1615 REMARK 3 L13: -0.4690 L23: -0.0378 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: 0.0741 S13: -0.3732 REMARK 3 S21: 0.2498 S22: 0.1012 S23: -0.0243 REMARK 3 S31: 0.0984 S32: 0.1811 S33: -0.1524 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.2551 7.9252 8.1689 REMARK 3 T TENSOR REMARK 3 T11: 1.4949 T22: 1.0020 REMARK 3 T33: 1.2298 T12: -0.0926 REMARK 3 T13: 0.2006 T23: 0.2974 REMARK 3 L TENSOR REMARK 3 L11: 0.0332 L22: 2.8501 REMARK 3 L33: 0.6144 L12: 0.3003 REMARK 3 L13: -0.1442 L23: -1.3221 REMARK 3 S TENSOR REMARK 3 S11: 0.2900 S12: -0.0991 S13: 0.6559 REMARK 3 S21: 0.8727 S22: -0.0907 S23: -0.5672 REMARK 3 S31: -1.3744 S32: 0.7407 S33: -0.0338 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.6019 5.4366 5.8598 REMARK 3 T TENSOR REMARK 3 T11: 1.4157 T22: 1.1834 REMARK 3 T33: 0.8901 T12: -0.0512 REMARK 3 T13: 0.2683 T23: 0.4038 REMARK 3 L TENSOR REMARK 3 L11: 4.2510 L22: 4.3465 REMARK 3 L33: 3.1800 L12: 0.6011 REMARK 3 L13: 0.2886 L23: -0.5502 REMARK 3 S TENSOR REMARK 3 S11: -0.0555 S12: 0.6532 S13: 0.7966 REMARK 3 S21: -0.4884 S22: -0.6223 S23: 0.0046 REMARK 3 S31: -1.5532 S32: 0.7488 S33: 0.6696 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.2067 5.3611 7.8141 REMARK 3 T TENSOR REMARK 3 T11: 1.6180 T22: 0.8863 REMARK 3 T33: 0.9897 T12: 0.0140 REMARK 3 T13: 0.2946 T23: 0.3254 REMARK 3 L TENSOR REMARK 3 L11: 2.4774 L22: 2.9747 REMARK 3 L33: 2.5038 L12: 0.4062 REMARK 3 L13: 0.5626 L23: -0.5208 REMARK 3 S TENSOR REMARK 3 S11: 0.0490 S12: 0.7710 S13: 0.9509 REMARK 3 S21: -0.6555 S22: -0.1910 S23: -0.7773 REMARK 3 S31: -1.3198 S32: 0.2675 S33: 0.3398 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7010 -0.2331 -6.2777 REMARK 3 T TENSOR REMARK 3 T11: 1.5296 T22: 1.1352 REMARK 3 T33: 0.7931 T12: 0.0021 REMARK 3 T13: 0.1134 T23: 0.2807 REMARK 3 L TENSOR REMARK 3 L11: 3.6728 L22: 2.1346 REMARK 3 L33: 7.6729 L12: -0.8547 REMARK 3 L13: 2.5554 L23: -3.9493 REMARK 3 S TENSOR REMARK 3 S11: -0.6113 S12: 1.5238 S13: 0.4515 REMARK 3 S21: -0.0962 S22: 0.2602 S23: 0.2450 REMARK 3 S31: -0.7604 S32: 0.0867 S33: 0.3826 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8826 -2.3498 4.9549 REMARK 3 T TENSOR REMARK 3 T11: 1.3945 T22: 0.7052 REMARK 3 T33: 0.6419 T12: 0.2473 REMARK 3 T13: 0.1760 T23: 0.2175 REMARK 3 L TENSOR REMARK 3 L11: 3.7697 L22: 0.8624 REMARK 3 L33: 1.8864 L12: 0.1070 REMARK 3 L13: 1.6946 L23: 0.0203 REMARK 3 S TENSOR REMARK 3 S11: 0.5563 S12: 0.8220 S13: 0.4399 REMARK 3 S21: -0.3985 S22: -0.3176 S23: -0.3453 REMARK 3 S31: -0.2525 S32: 0.5295 S33: -0.0881 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8648 -15.0843 -1.2524 REMARK 3 T TENSOR REMARK 3 T11: 1.4793 T22: 0.8638 REMARK 3 T33: 0.5097 T12: 0.4213 REMARK 3 T13: -0.2045 T23: 0.0933 REMARK 3 L TENSOR REMARK 3 L11: 7.9376 L22: 6.1242 REMARK 3 L33: 1.0704 L12: -0.4679 REMARK 3 L13: -2.3668 L23: -1.3385 REMARK 3 S TENSOR REMARK 3 S11: -0.6523 S12: 0.6767 S13: -0.3839 REMARK 3 S21: -1.4823 S22: 0.2555 S23: 0.6688 REMARK 3 S31: 1.0049 S32: -0.1410 S33: 0.0631 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7403 -21.4885 8.9313 REMARK 3 T TENSOR REMARK 3 T11: 1.2174 T22: 0.6613 REMARK 3 T33: 0.9336 T12: 0.3474 REMARK 3 T13: 0.0005 T23: -0.1164 REMARK 3 L TENSOR REMARK 3 L11: 5.0834 L22: 1.0338 REMARK 3 L33: 2.7231 L12: 2.2439 REMARK 3 L13: -1.9910 L23: -1.0881 REMARK 3 S TENSOR REMARK 3 S11: 0.4438 S12: 0.3406 S13: -0.3367 REMARK 3 S21: -0.4010 S22: -0.4739 S23: 0.2820 REMARK 3 S31: -0.0472 S32: -0.1296 S33: 0.1117 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 30 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7907 41.8508 -5.4343 REMARK 3 T TENSOR REMARK 3 T11: 0.7274 T22: 0.8723 REMARK 3 T33: 0.6809 T12: 0.2385 REMARK 3 T13: -0.0200 T23: 0.0686 REMARK 3 L TENSOR REMARK 3 L11: 4.4742 L22: 4.7177 REMARK 3 L33: 2.1492 L12: -0.3960 REMARK 3 L13: 1.2131 L23: 2.2493 REMARK 3 S TENSOR REMARK 3 S11: -0.1585 S12: 1.4087 S13: 0.3942 REMARK 3 S21: -0.2886 S22: 0.1103 S23: 0.7207 REMARK 3 S31: -0.7993 S32: -0.5584 S33: -0.0448 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M92 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35242 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 41.295 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.838 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.54 REMARK 200 R MERGE FOR SHELL (I) : 1.52600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 4000 0.1M BTP PH 5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.03667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.07333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 218 REMARK 465 ASN A 219 REMARK 465 LYS A 220 REMARK 465 PRO A 221 REMARK 465 PRO A 222 REMARK 465 ASP A 223 REMARK 465 GLY A 224 REMARK 465 ASN A 225 REMARK 465 ALA A 226 REMARK 465 ASN A 548 REMARK 465 ASP A 549 REMARK 465 PRO A 550 REMARK 465 ALA A 551 REMARK 465 ALA A 552 REMARK 465 GLN A 553 REMARK 465 ALA A 554 REMARK 465 GLU A 555 REMARK 465 PRO A 556 REMARK 465 PRO A 557 REMARK 465 ARG A 558 REMARK 465 SER A 559 REMARK 465 PRO A 560 REMARK 465 SER A 561 REMARK 465 ARG A 562 REMARK 465 THR A 563 REMARK 465 TYR A 564 REMARK 465 THR A 565 REMARK 465 TYR A 566 REMARK 465 ILE A 567 REMARK 465 SER A 568 REMARK 465 ARG A 569 REMARK 465 ASP B 61 REMARK 465 ASP B 62 REMARK 465 PRO B 63 REMARK 465 PRO B 64 REMARK 465 ASP B 65 REMARK 465 GLN B 140 REMARK 465 TRP B 141 REMARK 465 CYS B 142 REMARK 465 GLU B 143 REMARK 465 GLU B 144 REMARK 465 LYS B 145 REMARK 465 CYS C 16 REMARK 465 ASP C 17 REMARK 465 ARG C 18 REMARK 465 LYS C 19 REMARK 465 ALA C 20 REMARK 465 ALA C 21 REMARK 465 VAL C 22 REMARK 465 SER C 23 REMARK 465 HIS C 24 REMARK 465 TRP C 25 REMARK 465 GLN C 26 REMARK 465 GLN C 27 REMARK 465 GLN C 28 REMARK 465 SER C 29 REMARK 465 THR C 40 REMARK 465 THR C 41 REMARK 465 THR C 42 REMARK 465 ALA C 43 REMARK 465 PRO C 44 REMARK 465 SER C 45 REMARK 465 LEU C 46 REMARK 465 SER C 47 REMARK 465 GLY C 48 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 138 OG REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 ARG A 251 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 254 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 LYS A 430 CG CD CE NZ REMARK 470 ARG A 504 CG CD NE CZ NH1 NH2 REMARK 470 PRO B 2 CG CD REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 ASP B 17 CG OD1 OD2 REMARK 470 GLU B 19 CG CD OE1 OE2 REMARK 470 LYS B 28 CG CD CE NZ REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 ASP B 66 CG OD1 OD2 REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 LYS B 110 CG CD CE NZ REMARK 470 GLU B 115 CG CD OE1 OE2 REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 GLU B 130 CG CD OE1 OE2 REMARK 470 ARG B 136 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 137 CG CD CE NZ REMARK 470 TYR C 30 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 470 NZ LYS A 491 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 266 -79.96 -118.68 REMARK 500 ASN A 287 4.08 88.08 REMARK 500 ASP A 316 -159.20 -130.05 REMARK 500 SER A 327 6.55 80.21 REMARK 500 HIS A 345 -54.87 -163.48 REMARK 500 ASN A 356 137.59 -175.87 REMARK 500 ARG A 367 7.13 83.04 REMARK 500 ASP A 440 -113.16 60.24 REMARK 500 ARG A 464 137.00 -171.96 REMARK 500 ASP A 479 -157.06 -123.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J8V A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 602 DBREF 6M92 A 139 569 UNP Q9Y297 FBW1A_HUMAN 175 605 DBREF 6M92 B 2 145 UNP P63208 SKP1_HUMAN 2 163 DBREF 6M92 C 17 48 UNP P35222 CTNB1_HUMAN 17 48 SEQADV 6M92 SER A 138 UNP Q9Y297 EXPRESSION TAG SEQADV 6M92 B UNP P63208 ASP 37 DELETION SEQADV 6M92 B UNP P63208 ASP 38 DELETION SEQADV 6M92 B UNP P63208 GLU 39 DELETION SEQADV 6M92 B UNP P63208 GLY 40 DELETION SEQADV 6M92 B UNP P63208 ASP 41 DELETION SEQADV 6M92 B UNP P63208 ASP 42 DELETION SEQADV 6M92 B UNP P63208 PRO 71 DELETION SEQADV 6M92 B UNP P63208 PRO 72 DELETION SEQADV 6M92 B UNP P63208 GLU 73 DELETION SEQADV 6M92 B UNP P63208 ASP 74 DELETION SEQADV 6M92 B UNP P63208 ASP 75 DELETION SEQADV 6M92 B UNP P63208 GLU 76 DELETION SEQADV 6M92 B UNP P63208 ASN 77 DELETION SEQADV 6M92 B UNP P63208 LYS 78 DELETION SEQADV 6M92 B UNP P63208 GLU 79 DELETION SEQADV 6M92 B UNP P63208 LYS 80 DELETION SEQADV 6M92 B UNP P63208 ARG 81 DELETION SEQADV 6M92 B UNP P63208 THR 82 DELETION SEQADV 6M92 CYS C 16 UNP P35222 EXPRESSION TAG SEQRES 1 A 432 SER MET LEU GLN ARG ASP PHE ILE THR ALA LEU PRO ALA SEQRES 2 A 432 ARG GLY LEU ASP HIS ILE ALA GLU ASN ILE LEU SER TYR SEQRES 3 A 432 LEU ASP ALA LYS SER LEU CYS ALA ALA GLU LEU VAL CYS SEQRES 4 A 432 LYS GLU TRP TYR ARG VAL THR SER ASP GLY MET LEU TRP SEQRES 5 A 432 LYS LYS LEU ILE GLU ARG MET VAL ARG THR ASP SER LEU SEQRES 6 A 432 TRP ARG GLY LEU ALA GLU ARG ARG GLY TRP GLY GLN TYR SEQRES 7 A 432 LEU PHE LYS ASN LYS PRO PRO ASP GLY ASN ALA PRO PRO SEQRES 8 A 432 ASN SER PHE TYR ARG ALA LEU TYR PRO LYS ILE ILE GLN SEQRES 9 A 432 ASP ILE GLU THR ILE GLU SER ASN TRP ARG CYS GLY ARG SEQRES 10 A 432 HIS SER LEU GLN ARG ILE HIS CYS ARG SER GLU THR SER SEQRES 11 A 432 LYS GLY VAL TYR CYS LEU GLN TYR ASP ASP GLN LYS ILE SEQRES 12 A 432 VAL SER GLY LEU ARG ASP ASN THR ILE LYS ILE TRP ASP SEQRES 13 A 432 LYS ASN THR LEU GLU CYS LYS ARG ILE LEU THR GLY HIS SEQRES 14 A 432 THR GLY SER VAL LEU CYS LEU GLN TYR ASP GLU ARG VAL SEQRES 15 A 432 ILE ILE THR GLY SER SER ASP SER THR VAL ARG VAL TRP SEQRES 16 A 432 ASP VAL ASN THR GLY GLU MET LEU ASN THR LEU ILE HIS SEQRES 17 A 432 HIS CYS GLU ALA VAL LEU HIS LEU ARG PHE ASN ASN GLY SEQRES 18 A 432 MET MET VAL THR CYS SER LYS ASP ARG SER ILE ALA VAL SEQRES 19 A 432 TRP ASP MET ALA SER PRO THR ASP ILE THR LEU ARG ARG SEQRES 20 A 432 VAL LEU VAL GLY HIS ARG ALA ALA VAL ASN VAL VAL ASP SEQRES 21 A 432 PHE ASP ASP LYS TYR ILE VAL SER ALA SER GLY ASP ARG SEQRES 22 A 432 THR ILE LYS VAL TRP ASN THR SER THR CYS GLU PHE VAL SEQRES 23 A 432 ARG THR LEU ASN GLY HIS LYS ARG GLY ILE ALA CYS LEU SEQRES 24 A 432 GLN TYR ARG ASP ARG LEU VAL VAL SER GLY SER SER ASP SEQRES 25 A 432 ASN THR ILE ARG LEU TRP ASP ILE GLU CYS GLY ALA CYS SEQRES 26 A 432 LEU ARG VAL LEU GLU GLY HIS GLU GLU LEU VAL ARG CYS SEQRES 27 A 432 ILE ARG PHE ASP ASN LYS ARG ILE VAL SER GLY ALA TYR SEQRES 28 A 432 ASP GLY LYS ILE LYS VAL TRP ASP LEU VAL ALA ALA LEU SEQRES 29 A 432 ASP PRO ARG ALA PRO ALA GLY THR LEU CYS LEU ARG THR SEQRES 30 A 432 LEU VAL GLU HIS SER GLY ARG VAL PHE ARG LEU GLN PHE SEQRES 31 A 432 ASP GLU PHE GLN ILE VAL SER SER SER HIS ASP ASP THR SEQRES 32 A 432 ILE LEU ILE TRP ASP PHE LEU ASN ASP PRO ALA ALA GLN SEQRES 33 A 432 ALA GLU PRO PRO ARG SER PRO SER ARG THR TYR THR TYR SEQRES 34 A 432 ILE SER ARG SEQRES 1 B 144 PRO SER ILE LYS LEU GLN SER SER ASP GLY GLU ILE PHE SEQRES 2 B 144 GLU VAL ASP VAL GLU ILE ALA LYS GLN SER VAL THR ILE SEQRES 3 B 144 LYS THR MET LEU GLU ASP LEU GLY MET ASP PRO VAL PRO SEQRES 4 B 144 LEU PRO ASN VAL ASN ALA ALA ILE LEU LYS LYS VAL ILE SEQRES 5 B 144 GLN TRP CYS THR HIS HIS LYS ASP ASP PRO PRO ASP ASP SEQRES 6 B 144 ILE PRO VAL TRP ASP GLN GLU PHE LEU LYS VAL ASP GLN SEQRES 7 B 144 GLY THR LEU PHE GLU LEU ILE LEU ALA ALA ASN TYR LEU SEQRES 8 B 144 ASP ILE LYS GLY LEU LEU ASP VAL THR CYS LYS THR VAL SEQRES 9 B 144 ALA ASN MET ILE LYS GLY LYS THR PRO GLU GLU ILE ARG SEQRES 10 B 144 LYS THR PHE ASN ILE LYS ASN ASP PHE THR GLU GLU GLU SEQRES 11 B 144 GLU ALA GLN VAL ARG LYS GLU ASN GLN TRP CYS GLU GLU SEQRES 12 B 144 LYS SEQRES 1 C 33 CYS ASP ARG LYS ALA ALA VAL SER HIS TRP GLN GLN GLN SEQRES 2 C 33 SER TYR LEU ASP SEP GLY ILE HIS SER GLY ALA THR THR SEQRES 3 C 33 THR ALA PRO SER LEU SER GLY MODRES 6M92 SEP C 33 SER MODIFIED RESIDUE HET SEP C 33 10 HET J8V A 601 30 HET PO4 A 602 5 HETNAM SEP PHOSPHOSERINE HETNAM J8V 3-{[2-OXO-4-PHENOXY-6-(TRIFLUOROMETHYL)-1,2- HETNAM 2 J8V DIHYDROPYRIDINE-3-CARBONYL]AMINO}BENZOIC ACID HETNAM PO4 PHOSPHATE ION HETSYN SEP PHOSPHONOSERINE FORMUL 3 SEP C3 H8 N O6 P FORMUL 4 J8V C20 H13 F3 N2 O5 FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *37(H2 O) HELIX 1 AA1 ASP A 143 ARG A 151 1 9 HELIX 2 AA2 LEU A 153 TYR A 163 1 11 HELIX 3 AA3 ASP A 165 LEU A 174 1 10 HELIX 4 AA4 CYS A 176 GLY A 186 1 11 HELIX 5 AA5 MET A 187 ASP A 200 1 14 HELIX 6 AA6 ASP A 200 GLY A 211 1 12 HELIX 7 AA7 TRP A 212 LEU A 216 5 5 HELIX 8 AA8 PRO A 228 GLY A 253 1 26 HELIX 9 AA9 LEU A 497 ASP A 502 1 6 HELIX 10 AB1 PRO A 506 THR A 509 5 4 HELIX 11 AB2 VAL B 18 LYS B 22 1 5 HELIX 12 AB3 SER B 24 ASP B 33 1 10 HELIX 13 AB4 ASN B 45 HIS B 59 1 15 HELIX 14 AB5 PRO B 68 LEU B 75 1 8 HELIX 15 AB6 ASP B 78 ASP B 93 1 16 HELIX 16 AB7 ILE B 94 LYS B 110 1 17 HELIX 17 AB8 THR B 113 ASN B 122 1 10 HELIX 18 AB9 THR B 128 GLU B 138 1 11 SHEET 1 AA1 4 SER A 256 HIS A 261 0 SHEET 2 AA1 4 THR A 540 ASP A 545 -1 O ILE A 541 N ILE A 260 SHEET 3 AA1 4 GLN A 531 SER A 536 -1 N ILE A 532 O TRP A 544 SHEET 4 AA1 4 VAL A 522 PHE A 527 -1 N GLN A 526 O VAL A 533 SHEET 1 AA2 4 VAL A 270 TYR A 275 0 SHEET 2 AA2 4 LYS A 279 LEU A 284 -1 O VAL A 281 N GLN A 274 SHEET 3 AA2 4 ILE A 289 ASP A 293 -1 O TRP A 292 N ILE A 280 SHEET 4 AA2 4 CYS A 299 LEU A 303 -1 O LEU A 303 N ILE A 289 SHEET 1 AA3 4 VAL A 310 TYR A 315 0 SHEET 2 AA3 4 VAL A 319 SER A 324 -1 O ILE A 321 N GLN A 314 SHEET 3 AA3 4 THR A 328 ASP A 333 -1 O TRP A 332 N ILE A 320 SHEET 4 AA3 4 MET A 339 ILE A 344 -1 O LEU A 340 N VAL A 331 SHEET 1 AA4 4 VAL A 350 ASN A 356 0 SHEET 2 AA4 4 MET A 359 SER A 364 -1 O VAL A 361 N ARG A 354 SHEET 3 AA4 4 SER A 368 SER A 376 -1 O TRP A 372 N MET A 360 SHEET 4 AA4 4 ASP A 379 VAL A 387 -1 O ARG A 383 N VAL A 371 SHEET 1 AA5 4 VAL A 393 PHE A 398 0 SHEET 2 AA5 4 TYR A 402 SER A 407 -1 O VAL A 404 N ASP A 397 SHEET 3 AA5 4 ILE A 412 ASN A 416 -1 O LYS A 413 N SER A 405 SHEET 4 AA5 4 PHE A 422 LEU A 426 -1 O ARG A 424 N VAL A 414 SHEET 1 AA6 4 ILE A 433 ARG A 439 0 SHEET 2 AA6 4 LEU A 442 SER A 447 -1 O LEU A 442 N ARG A 439 SHEET 3 AA6 4 ILE A 452 ASP A 456 -1 O TRP A 455 N VAL A 443 SHEET 4 AA6 4 CYS A 462 LEU A 466 -1 O LEU A 466 N ILE A 452 SHEET 1 AA7 4 VAL A 473 PHE A 478 0 SHEET 2 AA7 4 ARG A 482 ALA A 487 -1 O VAL A 484 N ARG A 477 SHEET 3 AA7 4 LYS A 491 ASP A 496 -1 O TRP A 495 N ILE A 483 SHEET 4 AA7 4 CYS A 511 VAL A 516 -1 O LEU A 515 N ILE A 492 SHEET 1 AA8 3 ILE B 13 ASP B 17 0 SHEET 2 AA8 3 SER B 3 GLN B 7 -1 N ILE B 4 O VAL B 16 SHEET 3 AA8 3 VAL B 39 PRO B 40 1 O VAL B 39 N GLN B 7 LINK C ASP C 32 N SEP C 33 1555 1555 1.33 LINK C SEP C 33 N GLY C 34 1555 1555 1.33 CISPEP 1 ASP B 37 PRO B 38 0 -5.62 SITE 1 AC1 15 ARG A 330 MET A 339 THR A 342 ASN A 394 SITE 2 AC1 15 GLY A 408 ARG A 410 ARG A 431 GLY A 432 SITE 3 AC1 15 ILE A 433 ALA A 434 SER A 448 TYR A 488 SITE 4 AC1 15 ILE C 35 HIS C 36 SER C 37 SITE 1 AC2 6 GLN A 437 ARG A 477 PHE A 478 GLN A 526 SITE 2 AC2 6 PHE A 527 HOH A 701 CRYST1 82.590 82.590 111.110 90.00 90.00 120.00 P 31 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012108 0.006991 0.000000 0.00000 SCALE2 0.000000 0.013981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009000 0.00000