PDB Short entry for 6ML5 HEADER TRANSCRIPTION/DNA 26-SEP-18 6ML5 TITLE ZBTB24 ZINC FINGERS 4-8 WITH 19+1MER DNA OLIGONUCLEOTIDE (SEQUENCE 4) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 24; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGERS 4-8 (UNP RESIDUES 375-519); COMPND 5 SYNONYM: BONE MORPHOGENETIC PROTEIN-INDUCED FACTOR 1, BRAIN-SPECIFIC COMPND 6 PROTEIN 1, ZINC FINGER PROTEIN 450; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(*AP*CP*GP*CP*AP*GP*GP*TP*CP*CP*TP*GP*GP*AP*CP*GP*AP*AP*TP*T)-3'); COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*TP*AP*AP*TP*TP*CP*GP*TP*CP*CP*AP*GP*GP*AP*CP*CP*TP*GP*CP*G)-3'); COMPND 16 CHAIN: F; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ZBTB24, BIF1, BSG1, ZNF450; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 16 ORGANISM_COMMON: MOUSE; SOURCE 17 ORGANISM_TAXID: 10090 KEYWDS PROTEIN-DNA COMPLEX, TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG,R.REN REVDAT 4 11-OCT-23 6ML5 1 REMARK REVDAT 3 01-JAN-20 6ML5 1 REMARK REVDAT 2 30-OCT-19 6ML5 1 JRNL REVDAT 1 03-JUL-19 6ML5 0 JRNL AUTH R.REN,S.HARDIKAR,J.R.HORTON,Y.LU,Y.ZENG,A.K.SINGH,K.LIN, JRNL AUTH 2 L.D.COLETTA,J.SHEN,C.S.LIN KONG,H.HASHIMOTO,X.ZHANG,T.CHEN, JRNL AUTH 3 X.CHENG JRNL TITL STRUCTURAL BASIS OF SPECIFIC DNA BINDING BY THE JRNL TITL 2 TRANSCRIPTION FACTOR ZBTB24. JRNL REF NUCLEIC ACIDS RES. V. 47 8388 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31226215 JRNL DOI 10.1093/NAR/GKZ557 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 35393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9145 - 3.7747 1.00 2913 152 0.1631 0.1875 REMARK 3 2 3.7747 - 2.9972 0.99 2862 144 0.1883 0.1973 REMARK 3 3 2.9972 - 2.6187 1.00 2860 147 0.2314 0.2583 REMARK 3 4 2.6187 - 2.3794 1.00 2888 154 0.2265 0.2487 REMARK 3 5 2.3794 - 2.2089 1.00 2834 145 0.2374 0.2571 REMARK 3 6 2.2089 - 2.0787 1.00 2879 139 0.2561 0.2748 REMARK 3 7 2.0787 - 1.9747 1.00 2850 157 0.2636 0.2853 REMARK 3 8 1.9747 - 1.8887 1.00 2841 149 0.2756 0.3277 REMARK 3 9 1.8887 - 1.8160 0.99 2813 146 0.2908 0.2855 REMARK 3 10 1.8160 - 1.7534 0.97 2774 137 0.3048 0.3222 REMARK 3 11 1.7534 - 1.6985 0.95 2720 138 0.3290 0.3220 REMARK 3 12 1.6985 - 1.6500 0.85 2419 132 0.3403 0.3262 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2089 REMARK 3 ANGLE : 0.465 2968 REMARK 3 CHIRALITY : 0.029 320 REMARK 3 PLANARITY : 0.002 237 REMARK 3 DIHEDRAL : 17.473 1385 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 373 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6450 34.5469 25.6217 REMARK 3 T TENSOR REMARK 3 T11: 0.2322 T22: 0.1962 REMARK 3 T33: 0.1995 T12: 0.0953 REMARK 3 T13: 0.0019 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 8.7991 L22: 7.8285 REMARK 3 L33: 6.8752 L12: 0.3051 REMARK 3 L13: -0.9106 L23: 4.0691 REMARK 3 S TENSOR REMARK 3 S11: 0.0586 S12: -0.1280 S13: 0.1364 REMARK 3 S21: -0.3011 S22: -0.2073 S23: -0.1248 REMARK 3 S31: 0.2564 S32: -0.0624 S33: 0.1474 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 401 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9114 20.6531 7.8491 REMARK 3 T TENSOR REMARK 3 T11: 0.0966 T22: 0.1870 REMARK 3 T33: 0.1626 T12: 0.0165 REMARK 3 T13: 0.0170 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 5.9882 L22: 7.8826 REMARK 3 L33: 8.9751 L12: 1.9222 REMARK 3 L13: -0.2799 L23: 1.2286 REMARK 3 S TENSOR REMARK 3 S11: -0.1664 S12: 0.2115 S13: 0.2798 REMARK 3 S21: -0.3019 S22: 0.0445 S23: -0.2438 REMARK 3 S31: -0.3248 S32: -0.1111 S33: 0.0582 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 429 THROUGH 484 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7232 8.4447 8.2096 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.0983 REMARK 3 T33: 0.0646 T12: -0.0051 REMARK 3 T13: 0.0057 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 7.0774 L22: 3.5429 REMARK 3 L33: 0.8840 L12: -3.7968 REMARK 3 L13: -0.2612 L23: 0.3412 REMARK 3 S TENSOR REMARK 3 S11: -0.0628 S12: -0.2181 S13: -0.1214 REMARK 3 S21: 0.1794 S22: 0.0878 S23: 0.1000 REMARK 3 S31: 0.0694 S32: -0.0418 S33: -0.0284 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 485 THROUGH 515 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2902 27.4940 -9.1878 REMARK 3 T TENSOR REMARK 3 T11: 0.1434 T22: 0.1111 REMARK 3 T33: 0.1860 T12: -0.0594 REMARK 3 T13: -0.0378 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 6.5679 L22: 6.7881 REMARK 3 L33: 7.8050 L12: -1.0236 REMARK 3 L13: 1.2304 L23: -0.8989 REMARK 3 S TENSOR REMARK 3 S11: -0.2143 S12: 0.3356 S13: -0.1196 REMARK 3 S21: -0.5179 S22: 0.1395 S23: 0.4364 REMARK 3 S31: 0.1360 S32: -0.0184 S33: 0.0731 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1671 18.5177 -10.5778 REMARK 3 T TENSOR REMARK 3 T11: 0.3095 T22: 0.1915 REMARK 3 T33: 0.2393 T12: -0.0753 REMARK 3 T13: -0.1107 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 2.1665 L22: 0.6303 REMARK 3 L33: 8.6085 L12: -0.5928 REMARK 3 L13: 2.5732 L23: 0.9061 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: 0.1920 S13: -0.0011 REMARK 3 S21: -0.6117 S22: 0.3584 S23: 0.3529 REMARK 3 S31: -0.2174 S32: 0.0797 S33: -0.3703 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3119 10.5845 1.1170 REMARK 3 T TENSOR REMARK 3 T11: 0.1541 T22: 0.1278 REMARK 3 T33: 0.1001 T12: 0.0160 REMARK 3 T13: 0.0091 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 8.6638 L22: 6.6861 REMARK 3 L33: 3.4064 L12: -4.3586 REMARK 3 L13: 5.1229 L23: -1.3015 REMARK 3 S TENSOR REMARK 3 S11: -0.0805 S12: -0.1989 S13: -0.5328 REMARK 3 S21: -0.1538 S22: 0.1691 S23: 0.4557 REMARK 3 S31: -0.2048 S32: -0.0957 S33: -0.0957 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7700 16.9258 19.6928 REMARK 3 T TENSOR REMARK 3 T11: 0.1353 T22: 0.2023 REMARK 3 T33: 0.1162 T12: -0.0167 REMARK 3 T13: 0.0089 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 3.0184 L22: 2.3218 REMARK 3 L33: 7.5403 L12: 0.4237 REMARK 3 L13: 2.6862 L23: 0.0304 REMARK 3 S TENSOR REMARK 3 S11: 0.1303 S12: -0.5092 S13: -0.0588 REMARK 3 S21: 0.1931 S22: 0.1221 S23: -0.1128 REMARK 3 S31: -0.0256 S32: -0.3060 S33: -0.2555 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7578 16.4700 22.8768 REMARK 3 T TENSOR REMARK 3 T11: 0.1535 T22: 0.1899 REMARK 3 T33: 0.1429 T12: 0.0305 REMARK 3 T13: -0.0264 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 5.7930 L22: 3.8574 REMARK 3 L33: 7.2545 L12: 2.0113 REMARK 3 L13: 2.8586 L23: 1.2522 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: -0.2682 S13: 0.0273 REMARK 3 S21: 0.3330 S22: 0.1836 S23: -0.2988 REMARK 3 S31: -0.1911 S32: 0.1351 S33: -0.1288 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6742 19.5279 2.9732 REMARK 3 T TENSOR REMARK 3 T11: 0.2391 T22: 0.1810 REMARK 3 T33: 0.1353 T12: 0.0217 REMARK 3 T13: 0.0170 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 4.8527 L22: 7.8096 REMARK 3 L33: 3.6485 L12: 1.4361 REMARK 3 L13: 3.2930 L23: 4.2068 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: 0.1264 S13: 0.2203 REMARK 3 S21: -0.6804 S22: 0.3820 S23: -0.1745 REMARK 3 S31: -1.3192 S32: -0.7042 S33: -0.4335 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0798 10.4249 -8.8948 REMARK 3 T TENSOR REMARK 3 T11: 0.3087 T22: 0.2229 REMARK 3 T33: 0.2477 T12: -0.0381 REMARK 3 T13: -0.0664 T23: -0.0512 REMARK 3 L TENSOR REMARK 3 L11: 6.9146 L22: 8.9585 REMARK 3 L33: 7.5487 L12: -1.1999 REMARK 3 L13: 4.5842 L23: -1.1549 REMARK 3 S TENSOR REMARK 3 S11: -0.1861 S12: 0.6153 S13: -1.6423 REMARK 3 S21: -0.5625 S22: 0.7284 S23: 0.3567 REMARK 3 S31: 0.4027 S32: -0.0591 S33: -0.5504 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ML5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000237120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35444 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 27.911 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 6ML4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1 M HEPES, PH 7.5, 0.2 REMARK 280 M AMMONIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.11850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 370 REMARK 465 PRO A 371 REMARK 465 LEU A 372 REMARK 465 LYS A 515 REMARK 465 HIS A 516 REMARK 465 THR A 517 REMARK 465 ALA A 518 REMARK 465 ASP A 519 REMARK 465 TYR A 520 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 390 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 509 CD CE NZ REMARK 470 GLU A 514 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 409 -60.99 -95.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 841 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH F 166 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH F 167 DISTANCE = 7.34 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 379 SG REMARK 620 2 CYS A 382 SG 116.2 REMARK 620 3 HIS A 395 NE2 112.4 96.7 REMARK 620 4 HIS A 399 NE2 103.2 119.6 108.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 407 SG REMARK 620 2 CYS A 410 SG 119.1 REMARK 620 3 HIS A 423 NE2 118.2 94.0 REMARK 620 4 HIS A 427 NE2 112.0 116.7 92.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 435 SG REMARK 620 2 CYS A 438 SG 118.6 REMARK 620 3 HIS A 451 NE2 112.9 105.9 REMARK 620 4 HIS A 455 NE2 113.0 112.2 90.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 463 SG REMARK 620 2 CYS A 466 SG 116.0 REMARK 620 3 HIS A 479 NE2 110.1 94.9 REMARK 620 4 HIS A 483 NE2 102.7 119.6 113.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 605 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 491 SG REMARK 620 2 CYS A 494 SG 117.0 REMARK 620 3 HIS A 507 NE2 109.8 108.0 REMARK 620 4 HIS A 511 NE2 110.7 116.2 91.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO E 402 DBREF 6ML5 A 375 519 UNP Q80X44 ZBT24_MOUSE 375 519 DBREF 6ML5 E 1 20 PDB 6ML5 6ML5 1 20 DBREF 6ML5 F 1 20 PDB 6ML5 6ML5 1 20 SEQADV 6ML5 GLY A 370 UNP Q80X44 EXPRESSION TAG SEQADV 6ML5 PRO A 371 UNP Q80X44 EXPRESSION TAG SEQADV 6ML5 LEU A 372 UNP Q80X44 EXPRESSION TAG SEQADV 6ML5 GLY A 373 UNP Q80X44 EXPRESSION TAG SEQADV 6ML5 SER A 374 UNP Q80X44 EXPRESSION TAG SEQADV 6ML5 TYR A 520 UNP Q80X44 EXPRESSION TAG SEQRES 1 A 151 GLY PRO LEU GLY SER LYS SER PHE THR CYS ASP GLN CYS SEQRES 2 A 151 GLY LYS TYR PHE SER GLN LYS ARG GLN LEU LYS SER HIS SEQRES 3 A 151 TYR ARG VAL HIS THR GLY HIS SER LEU PRO GLU CYS SER SEQRES 4 A 151 HIS CYS HIS ARG LYS PHE MET ASP VAL SER GLN LEU LYS SEQRES 5 A 151 LYS HIS LEU ARG THR HIS THR GLY GLU LYS PRO PHE THR SEQRES 6 A 151 CYS GLU ILE CYS GLY LYS SER PHE THR ALA LYS SER SER SEQRES 7 A 151 LEU GLN THR HIS ILE ARG ILE HIS ARG GLY GLU LYS PRO SEQRES 8 A 151 TYR SER CYS SER ILE CYS GLY LYS CYS PHE SER ASP SER SEQRES 9 A 151 SER ALA LYS ARG ARG HIS CYS ILE LEU HIS THR GLY LYS SEQRES 10 A 151 LYS PRO PHE SER CYS PRO GLU CYS GLY LEU GLN PHE ALA SEQRES 11 A 151 ARG LEU ASP ASN LEU LYS ALA HIS LEU LYS ILE HIS SER SEQRES 12 A 151 LYS GLU LYS HIS THR ALA ASP TYR SEQRES 1 E 20 DA DC DG DC DA DG DG DT DC DC DT DG DG SEQRES 2 E 20 DA DC DG DA DA DT DT SEQRES 1 F 20 DT DA DA DT DT DC DG DT DC DC DA DG DG SEQRES 2 F 20 DA DC DC DT DG DC DG HET ZN A 601 1 HET ZN A 602 1 HET ZN A 603 1 HET ZN A 604 1 HET ZN A 605 1 HET EDO A 606 4 HET EDO A 607 4 HET EDO A 608 4 HET EDO E 401 4 HET EDO E 402 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 ZN 5(ZN 2+) FORMUL 9 EDO 5(C2 H6 O2) FORMUL 14 HOH *278(H2 O) HELIX 1 AA1 GLN A 388 TYR A 396 1 9 HELIX 2 AA2 TYR A 396 GLY A 401 1 6 HELIX 3 AA3 ASP A 416 GLY A 429 1 14 HELIX 4 AA4 ALA A 444 GLY A 457 1 14 HELIX 5 AA5 ASP A 472 ILE A 481 1 10 HELIX 6 AA6 LEU A 482 GLY A 485 5 4 HELIX 7 AA7 ARG A 500 LYS A 513 1 14 SHEET 1 AA1 2 PHE A 377 THR A 378 0 SHEET 2 AA1 2 TYR A 385 PHE A 386 -1 O PHE A 386 N PHE A 377 SHEET 1 AA2 2 PHE A 433 THR A 434 0 SHEET 2 AA2 2 SER A 441 PHE A 442 -1 O PHE A 442 N PHE A 433 SHEET 1 AA3 2 TYR A 461 SER A 462 0 SHEET 2 AA3 2 CYS A 469 PHE A 470 -1 O PHE A 470 N TYR A 461 SHEET 1 AA4 2 PHE A 489 SER A 490 0 SHEET 2 AA4 2 GLN A 497 PHE A 498 -1 O PHE A 498 N PHE A 489 LINK SG CYS A 379 ZN ZN A 601 1555 1555 2.34 LINK SG CYS A 382 ZN ZN A 601 1555 1555 2.26 LINK NE2 HIS A 395 ZN ZN A 601 1555 1555 2.05 LINK NE2 HIS A 399 ZN ZN A 601 1555 1555 2.04 LINK SG CYS A 407 ZN ZN A 602 1555 1555 2.35 LINK SG CYS A 410 ZN ZN A 602 1555 1555 2.28 LINK NE2 HIS A 423 ZN ZN A 602 1555 1555 2.02 LINK NE2 HIS A 427 ZN ZN A 602 1555 1555 2.03 LINK SG CYS A 435 ZN ZN A 603 1555 1555 2.33 LINK SG CYS A 438 ZN ZN A 603 1555 1555 2.28 LINK NE2 HIS A 451 ZN ZN A 603 1555 1555 2.03 LINK NE2 HIS A 455 ZN ZN A 603 1555 1555 2.04 LINK SG CYS A 463 ZN ZN A 604 1555 1555 2.31 LINK SG CYS A 466 ZN ZN A 604 1555 1555 2.28 LINK NE2 HIS A 479 ZN ZN A 604 1555 1555 2.04 LINK NE2 HIS A 483 ZN ZN A 604 1555 1555 2.03 LINK SG CYS A 491 ZN ZN A 605 1555 1555 2.29 LINK SG CYS A 494 ZN ZN A 605 1555 1555 2.29 LINK NE2 HIS A 507 ZN ZN A 605 1555 1555 2.05 LINK NE2 HIS A 511 ZN ZN A 605 1555 1555 2.02 SITE 1 AC1 4 CYS A 379 CYS A 382 HIS A 395 HIS A 399 SITE 1 AC2 4 CYS A 407 CYS A 410 HIS A 423 HIS A 427 SITE 1 AC3 4 CYS A 435 CYS A 438 HIS A 451 HIS A 455 SITE 1 AC4 4 CYS A 463 CYS A 466 HIS A 479 HIS A 483 SITE 1 AC5 4 CYS A 491 CYS A 494 HIS A 507 HIS A 511 SITE 1 AC6 1 GLU A 493 SITE 1 AC7 3 PRO A 460 TYR A 461 SER A 462 SITE 1 AC8 6 SER A 374 LYS A 375 SER A 376 PHE A 377 SITE 2 AC8 6 SER A 387 HOH A 710 SITE 1 AC9 5 LYS A 440 HIS A 451 DT E 8 DC E 9 SITE 2 AC9 5 HOH E 543 SITE 1 AD1 4 DG E 7 DT E 8 DC E 9 HOH E 510 CRYST1 46.009 68.237 48.575 90.00 92.54 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021735 0.000000 0.000964 0.00000 SCALE2 0.000000 0.014655 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020607 0.00000