PDB Short entry for 6NEF HEADER PROTEIN FIBRIL 17-DEC-18 6NEF TITLE OUTER MEMBRANE CYTOCHROME S FILAMENT FROM GEOBACTER SULFURREDUCENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TYPE CYTOCHROME OMCS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OUTER MEMBRANE CYTOCHROME S; COMPND 5 OTHER_DETAILS: SIX-HEME MULTIHEME C-TYPE CYTOCHROME, PROTEIN FIBRIL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS (STRAIN ATCC 51573 / SOURCE 3 DSM 12127 / PCA); SOURCE 4 ORGANISM_TAXID: 243231; SOURCE 5 STRAIN: ATCC 51573 / DSM 12127 / PCA KEYWDS CONDUCTIVE, FILAMENT, NANOWIRE, SIX-HEME MULTIHEME C-TYPE CYTOCHROME, KEYWDS 2 PROTEIN FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR D.J.FILMAN,S.F.MARINO,J.E.WARD,L.YANG,Z.MESTER,E.BULLITT,D.R.LOVLEY, AUTHOR 2 M.STRAUSS REVDAT 3 11-SEP-19 6NEF 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 HET HETNAM HETSYN FORMUL REVDAT 3 3 1 LINK SITE ATOM REVDAT 2 10-JUL-19 6NEF 1 JRNL REVDAT 1 03-JUL-19 6NEF 0 JRNL AUTH D.J.FILMAN,S.F.MARINO,J.E.WARD,L.YANG,Z.MESTER,E.BULLITT, JRNL AUTH 2 D.R.LOVLEY,M.STRAUSS JRNL TITL CRYO-EM REVEALS THE STRUCTURAL BASIS OF LONG-RANGE ELECTRON JRNL TITL 2 TRANSPORT IN A CYTOCHROME-BASED BACTERIAL NANOWIRE. JRNL REF COMMUN BIOL V. 2 219 2019 JRNL REFN ESSN 2399-3642 JRNL PMID 31240257 JRNL DOI 10.1038/S42003-019-0448-9 REMARK 2 REMARK 2 RESOLUTION. 3.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SERIALEM, RELION, COOT, REFMAC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : RECIPROCAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : ATOMIC MODEL WAS BUILT DE NOVO VISUALLY AND REMARK 3 REPEATEDLY REBUILT VISUALLY USING COOT AND SPDBV. AFTER EACH REMARK 3 ROUND OF MANUAL REBUILDING, THE PARAMETERS OF THE ATOMIC MODEL REMARK 3 UNDERWENT STEREOCHEMICALLY RESTRAINED RECIPROCAL SPACE REMARK 3 REFINEMENT, USING EITHER REFMAC5 OR PHENIX.AUTOBUILD OR BOTH, REMARK 3 USING AS A REFERENCE THE AMPLITUDES AND PHASES OF THE FOURIER REMARK 3 TRANSFORM OF A PORTION OF THE CRYOEM RECONSTRUCTION. FOR REMARK 3 CONVENIENCE, A SINGLE-SUBUNIT MODEL WAS INITIALLY BUILT TO FIT REMARK 3 AN APPROXIMATION OF THE REFERENCE MAP IN SPACE GROUP P4(3), REMARK 3 WHICH WAS SUBSEQUENTLY REPLACED BY A THREE-SUBUNIT MODEL, USING REMARK 3 THE AUTHENTIC HELICAL PARAMETERS OF THE MAP. ONE OF THE TWO REMARK 3 AXIAL LIGANDS FOR HEM 505 IS NE2 OF HIS 41 FROM A NEIGHBORING REMARK 3 HELICAL-SYMMETRY-RELATED PROTEIN CHAIN. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.400 REMARK 3 NUMBER OF PARTICLES : 462964 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6NEF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-18. REMARK 100 THE DEPOSITION ID IS D_1000238653. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : OUTER MEMBRANE CYTOCHROME S REMARK 245 FILAMENT AS A BACTERIAL NANOWIRE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 45.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SOME OBSERVED FILAMENTS ARE HUNDREDS OF SUBUNITS LONG REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 HELICAL SYMMETRY WITH THE FOLLOWING PARAMETERS: REMARK 300 ROTATION PER SUBUNIT (TWIST) = 83.01 DEGREES REMARK 300 RISE PER SUBUNIT (HEIGHT) = 47.50 ANGSTROMS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.110978 0.993822 -0.001637 -0.27569 REMARK 350 BIOMT2 2 -0.993812 0.110984 0.004530 0.14616 REMARK 350 BIOMT3 2 0.004684 0.001124 0.999988 47.68607 REMARK 350 BIOMT1 3 0.114483 -0.993425 0.000923 -0.16191 REMARK 350 BIOMT2 3 0.993424 0.114484 0.001357 0.52867 REMARK 350 BIOMT3 3 -0.001454 0.000762 0.999999 -47.68451 REMARK 350 BIOMT1 4 -0.975364 0.220589 0.002683 -0.23909 REMARK 350 BIOMT2 4 -0.220567 -0.975350 0.006660 0.65238 REMARK 350 BIOMT3 4 0.004087 0.005904 0.999973 95.37044 REMARK 350 BIOMT1 5 -0.973787 -0.227461 -0.000319 -0.74965 REMARK 350 BIOMT2 5 0.227459 -0.973785 0.002429 0.36364 REMARK 350 BIOMT3 5 -0.000863 0.002294 0.999998 -95.36833 REMARK 350 BIOMT1 6 -0.327455 -0.944853 0.005279 0.19001 REMARK 350 BIOMT2 6 0.944867 -0.327445 0.002602 0.88820 REMARK 350 BIOMT3 6 -0.000730 0.005841 0.999982 143.05498 REMARK 350 BIOMT1 7 -0.337447 0.941344 -0.001527 -0.69701 REMARK 350 BIOMT2 7 -0.941344 -0.337445 0.001318 -0.30384 REMARK 350 BIOMT3 7 0.000726 0.001882 0.999999 -143.05138 REMARK 350 BIOMT1 8 0.902691 -0.430290 0.001535 0.39393 REMARK 350 BIOMT2 8 0.430291 0.902692 -0.000428 0.70394 REMARK 350 BIOMT3 8 -0.001202 0.001047 0.999997 190.74121 REMARK 350 BIOMT1 9 0.896524 0.442996 -0.000561 -0.07190 REMARK 350 BIOMT2 9 -0.442996 0.896524 -0.000009 -0.39266 REMARK 350 BIOMT3 9 0.000499 0.000257 1.000001 -190.73496 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 386 O ALA A 414 2.02 REMARK 500 OG1 THR A 217 OE1 GLN A 233 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 264 CB CYS A 264 SG -0.124 REMARK 500 CYS A 428 CB CYS A 428 SG -0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 212 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 CYS A 356 CA - CB - SG ANGL. DEV. = -15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 27 89.48 -69.76 REMARK 500 ALA A 32 -79.04 -65.96 REMARK 500 GLU A 33 48.99 -152.60 REMARK 500 CYS A 34 -52.28 -22.87 REMARK 500 HIS A 41 -169.43 -118.37 REMARK 500 LEU A 44 68.39 -100.52 REMARK 500 ALA A 47 -169.97 -124.28 REMARK 500 THR A 53 -179.59 -178.61 REMARK 500 GLN A 68 2.30 -63.02 REMARK 500 SER A 85 -164.30 -114.97 REMARK 500 SER A 86 -157.18 -52.06 REMARK 500 TYR A 87 -170.27 -48.80 REMARK 500 HIS A 88 64.82 90.63 REMARK 500 SER A 90 128.16 -178.15 REMARK 500 MET A 96 99.95 -68.84 REMARK 500 PRO A 97 -72.00 -58.45 REMARK 500 ALA A 98 -51.45 -135.77 REMARK 500 LEU A 103 41.89 -104.37 REMARK 500 VAL A 122 -55.30 -129.67 REMARK 500 ARG A 123 33.44 -143.02 REMARK 500 TYR A 142 -165.14 -104.50 REMARK 500 TYR A 158 122.99 -37.33 REMARK 500 GLN A 162 69.63 -106.46 REMARK 500 THR A 186 157.00 179.16 REMARK 500 PRO A 235 -95.52 -61.56 REMARK 500 ALA A 236 -2.37 -170.09 REMARK 500 SER A 241 0.84 94.08 REMARK 500 THR A 242 52.44 -140.46 REMARK 500 THR A 249 -158.55 -78.61 REMARK 500 THR A 250 139.57 -35.27 REMARK 500 ARG A 281 147.22 -171.43 REMARK 500 ALA A 288 86.79 -150.54 REMARK 500 LYS A 302 -71.40 -90.71 REMARK 500 THR A 310 77.11 76.33 REMARK 500 GLN A 311 -48.86 -29.06 REMARK 500 TYR A 315 -178.25 -67.20 REMARK 500 LEU A 316 80.94 -151.41 REMARK 500 SER A 317 -61.21 -135.62 REMARK 500 ALA A 319 76.36 -153.95 REMARK 500 ALA A 335 32.70 77.68 REMARK 500 THR A 340 -60.75 -95.44 REMARK 500 THR A 343 74.85 52.57 REMARK 500 ALA A 345 -167.90 -127.57 REMARK 500 ALA A 347 9.39 -69.61 REMARK 500 ALA A 361 -168.06 -162.96 REMARK 500 PHE A 370 -169.70 -109.10 REMARK 500 LEU A 372 50.39 35.90 REMARK 500 ASP A 381 -75.24 -56.94 REMARK 500 ASN A 385 130.26 -30.68 REMARK 500 THR A 390 14.13 -141.21 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 33 CYS A 34 -141.86 REMARK 500 LEU A 342 THR A 343 145.18 REMARK 500 PHE A 364 ASP A 365 -146.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 38 NE2 REMARK 620 2 HEC A 501 NA 119.6 REMARK 620 3 HEC A 501 NB 105.0 92.4 REMARK 620 4 HEC A 501 NC 74.9 165.0 87.0 REMARK 620 5 HEC A 501 ND 86.6 90.5 164.7 86.4 REMARK 620 6 HIS A 172 NE2 147.2 82.9 96.9 82.3 68.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 76 NE2 REMARK 620 2 HEC A 502 NA 100.6 REMARK 620 3 HEC A 502 NB 73.0 89.5 REMARK 620 4 HEC A 502 NC 70.5 170.4 84.4 REMARK 620 5 HEC A 502 ND 100.5 92.7 173.4 92.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 507 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 131 O REMARK 620 2 GLY A 134 O 102.4 REMARK 620 3 ASN A 136 OD1 95.2 73.9 REMARK 620 4 ASP A 147 OD2 78.3 158.4 84.5 REMARK 620 5 HEC A 504 O1A 94.0 70.0 143.9 131.5 REMARK 620 6 HEC A 504 O1D 137.7 119.2 102.7 65.9 93.4 REMARK 620 7 HEC A 504 O2D 147.5 87.4 57.5 81.6 118.3 49.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 504 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 135 NE2 REMARK 620 2 HEC A 504 NA 98.1 REMARK 620 3 HEC A 504 NB 83.5 88.9 REMARK 620 4 HEC A 504 NC 97.1 164.8 93.9 REMARK 620 5 HEC A 504 ND 107.1 91.1 169.3 83.4 REMARK 620 6 HIS A 268 NE2 167.8 89.3 87.0 75.9 82.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 506 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 282 NE2 REMARK 620 2 HEC A 506 NA 82.8 REMARK 620 3 HEC A 506 NB 81.4 91.1 REMARK 620 4 HEC A 506 NC 81.6 164.2 88.5 REMARK 620 5 HEC A 506 ND 83.0 92.8 163.3 83.3 REMARK 620 6 HIS A 429 NE2 166.3 84.8 104.4 110.6 92.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 505 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 357 NE2 REMARK 620 2 HEC A 505 NA 73.9 REMARK 620 3 HEC A 505 NB 93.8 85.8 REMARK 620 4 HEC A 505 NC 105.7 174.1 88.4 REMARK 620 5 HEC A 505 ND 78.1 87.1 170.4 98.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-9357 RELATED DB: EMDB REMARK 900 OUTER MEMBRANE CYTOCHROME S FILAMENT FROM GEOBACTER SULFURREDUCENS DBREF 6NEF A 26 432 UNP Q74A86 OMCS_GEOSL 26 432 SEQRES 1 A 407 PHE HIS SER GLY GLY VAL ALA GLU CYS GLU GLY CYS HIS SEQRES 2 A 407 THR MET HIS ASN SER LEU GLY GLY ALA VAL MET ASN SER SEQRES 3 A 407 ALA THR ALA GLN PHE THR THR GLY PRO MET LEU LEU GLN SEQRES 4 A 407 GLY ALA THR GLN SER SER SER CYS LEU ASN CYS HIS GLN SEQRES 5 A 407 HIS ALA GLY ASP THR GLY PRO SER SER TYR HIS ILE SER SEQRES 6 A 407 THR ALA GLU ALA ASP MET PRO ALA GLY THR ALA PRO LEU SEQRES 7 A 407 GLN MET THR PRO GLY GLY ASP PHE GLY TRP VAL LYS LYS SEQRES 8 A 407 THR TYR THR TRP ASN VAL ARG GLY LEU ASN THR SER GLU SEQRES 9 A 407 GLY GLU ARG LYS GLY HIS ASN ILE VAL ALA GLY ASP TYR SEQRES 10 A 407 ASN TYR VAL ALA ASP THR THR LEU THR THR ALA PRO GLY SEQRES 11 A 407 GLY THR TYR PRO ALA ASN GLN LEU HIS CYS SER SER CYS SEQRES 12 A 407 HIS ASP PRO HIS GLY LYS TYR ARG ARG PHE VAL ASP GLY SEQRES 13 A 407 SER ILE ALA THR THR GLY LEU PRO ILE LYS ASN SER GLY SEQRES 14 A 407 SER TYR GLN ASN SER ASN ASP PRO THR ALA TRP GLY ALA SEQRES 15 A 407 VAL GLY ALA TYR ARG ILE LEU GLY GLY THR GLY TYR GLN SEQRES 16 A 407 PRO LYS SER LEU SER GLY SER TYR ALA PHE ALA ASN GLN SEQRES 17 A 407 VAL PRO ALA ALA VAL ALA PRO SER THR TYR ASN ARG THR SEQRES 18 A 407 GLU ALA THR THR GLN THR ARG VAL ALA TYR GLY GLN GLY SEQRES 19 A 407 MET SER GLU TRP CYS ALA ASN CYS HIS THR ASP ILE HIS SEQRES 20 A 407 ASN SER ALA TYR PRO THR ASN LEU ARG HIS PRO ALA GLY SEQRES 21 A 407 ASN GLY ALA LYS PHE GLY ALA THR ILE ALA GLY LEU TYR SEQRES 22 A 407 ASN SER TYR LYS LYS SER GLY ASP LEU THR GLY THR GLN SEQRES 23 A 407 ALA SER ALA TYR LEU SER LEU ALA PRO PHE GLU GLU GLY SEQRES 24 A 407 THR ALA ASP TYR THR VAL LEU LYS GLY HIS ALA LYS ILE SEQRES 25 A 407 ASP ASP THR ALA LEU THR GLY ALA ASP ALA THR SER ASN SEQRES 26 A 407 VAL ASN CYS LEU SER CYS HIS ARG ALA HIS ALA SER GLY SEQRES 27 A 407 PHE ASP SER MET THR ARG PHE ASN LEU ALA TYR GLU PHE SEQRES 28 A 407 THR THR ILE ALA ASP ALA SER GLY ASN SER ILE TYR GLY SEQRES 29 A 407 THR ASP PRO ASN THR SER SER LEU GLN GLY ARG SER VAL SEQRES 30 A 407 ASN GLU MET THR ALA ALA TYR TYR GLY ARG THR ALA ASP SEQRES 31 A 407 LYS PHE ALA PRO TYR GLN ARG ALA LEU CYS ASN LYS CYS SEQRES 32 A 407 HIS ALA LYS ASP HET HEC A 501 43 HET HEC A 502 43 HET HEC A 503 43 HET HEC A 504 43 HET HEC A 505 43 HET HEC A 506 43 HET MG A 507 1 HETNAM HEC HEME C HETNAM MG MAGNESIUM ION FORMUL 2 HEC 6(C34 H34 FE N4 O4) FORMUL 8 MG MG 2+ HELIX 1 AA1 GLU A 33 CYS A 37 5 5 HELIX 2 AA2 CYS A 72 GLN A 77 1 6 HELIX 3 AA3 ASP A 110 VAL A 114 5 5 HELIX 4 AA4 HIS A 164 HIS A 169 1 6 HELIX 5 AA5 GLY A 259 ALA A 265 1 7 HELIX 6 AA6 GLY A 291 TYR A 301 1 11 HELIX 7 AA7 THR A 310 ALA A 314 5 5 HELIX 8 AA8 ASP A 327 GLY A 333 1 7 HELIX 9 AA9 ASN A 352 CYS A 356 5 5 HELIX 10 AB1 SER A 401 TYR A 409 1 9 HELIX 11 AB2 LEU A 424 CYS A 428 5 5 SHEET 1 AA1 3 ILE A 183 ALA A 184 0 SHEET 2 AA1 3 ARG A 176 ARG A 177 -1 N ARG A 176 O ALA A 184 SHEET 3 AA1 3 VAL A 208 GLY A 209 -1 O VAL A 208 N ARG A 177 SHEET 1 AA2 2 ILE A 379 ALA A 380 0 SHEET 2 AA2 2 SER A 386 ILE A 387 -1 O ILE A 387 N ILE A 379 LINK SG CYS A 34 CAB HEC A 501 1555 1555 1.83 LINK NE2 HIS A 38 FE HEC A 501 1555 1555 2.40 LINK SG CYS A 72 CAB HEC A 502 1555 1555 1.84 LINK NE2 HIS A 76 FE HEC A 502 1555 1555 2.66 LINK O GLU A 131 MG MG A 507 1555 1555 2.54 LINK O GLY A 134 MG MG A 507 1555 1555 2.92 LINK NE2 HIS A 135 FE HEC A 504 1555 1555 2.47 LINK OD1 ASN A 136 MG MG A 507 1555 1555 2.32 LINK OD2 ASP A 147 MG MG A 507 1555 1555 2.22 LINK SG CYS A 165 CAB HEC A 503 1555 1555 1.78 LINK NE2 HIS A 172 FE HEC A 501 1555 1555 2.63 LINK SG CYS A 264 CAB HEC A 504 1555 1555 1.78 LINK NE2 HIS A 268 FE HEC A 504 1555 1555 2.59 LINK NE2 HIS A 282 FE HEC A 506 1555 1555 2.47 LINK SG CYS A 353 CAB HEC A 505 1555 1555 1.86 LINK NE2 HIS A 357 FE HEC A 505 1555 1555 2.71 LINK SG CYS A 425 CAB HEC A 506 1555 1555 1.82 LINK NE2 HIS A 429 FE HEC A 506 1555 1555 2.58 LINK O1A HEC A 504 MG MG A 507 1555 1555 2.19 LINK O1D HEC A 504 MG MG A 507 1555 1555 2.63 LINK O2D HEC A 504 MG MG A 507 1555 1555 2.55 SITE 1 AC1 13 HIS A 27 VAL A 31 GLU A 33 CYS A 34 SITE 2 AC1 13 CYS A 37 HIS A 38 MET A 61 LEU A 63 SITE 3 AC1 13 GLN A 68 HIS A 172 PRO A 221 LYS A 222 SITE 4 AC1 13 SER A 223 SITE 1 AC2 13 PHE A 26 HIS A 27 SER A 28 SER A 71 SITE 2 AC2 13 CYS A 72 CYS A 75 HIS A 76 TYR A 87 SITE 3 AC2 13 HIS A 169 SER A 193 SER A 195 ARG A 212 SITE 4 AC2 13 HEC A 503 SITE 1 AC3 14 LEU A 73 ILE A 89 THR A 106 PRO A 107 SITE 2 AC3 14 GLY A 108 CYS A 165 CYS A 168 HIS A 169 SITE 3 AC3 14 TYR A 211 ARG A 212 TYR A 256 LEU A 354 SITE 4 AC3 14 HIS A 360 HEC A 502 SITE 1 AC4 16 GLU A 131 ARG A 132 GLY A 134 HIS A 135 SITE 2 AC4 16 ASN A 136 ASP A 147 LEU A 150 ALA A 160 SITE 3 AC4 16 CYS A 264 CYS A 267 HIS A 268 HIS A 357 SITE 4 AC4 16 SER A 366 MET A 367 HEC A 505 MG A 507 SITE 1 AC5 10 ARG A 132 PRO A 154 SER A 261 HIS A 268 SITE 2 AC5 10 ILE A 271 CYS A 353 CYS A 356 HIS A 357 SITE 3 AC5 10 SER A 366 HEC A 504 SITE 1 AC6 7 TYR A 276 HIS A 282 PRO A 283 PHE A 290 SITE 2 AC6 7 CYS A 425 CYS A 428 HIS A 429 SITE 1 AC7 5 GLU A 131 GLY A 134 ASN A 136 ASP A 147 SITE 2 AC7 5 HEC A 504 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000