PDB Short entry for 6NFX HEADER PROTEIN BINDING 21-DEC-18 6NFX TITLE MBTD1 MBT REPEATS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MBT DOMAIN-CONTAINING PROTEIN 1,ENHANCER OF POLYCOMB COMPND 3 HOMOLOG 1; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MBTD1, EPC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS MBT DOMAIN, PROTEIN BINDING, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHANG,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 11-OCT-23 6NFX 1 LINK REVDAT 2 17-JUN-20 6NFX 1 JRNL REVDAT 1 30-JAN-19 6NFX 0 JRNL AUTH H.ZHANG,M.DEVOUCOUX,X.SONG,L.LI,G.AYAZ,H.CHENG,W.TEMPEL, JRNL AUTH 2 C.DONG,P.LOPPNAU,J.COTE,J.MIN JRNL TITL STRUCTURAL BASIS FOR EPC1-MEDIATED RECRUITMENT OF MBTD1 INTO JRNL TITL 2 THE NUA4/TIP60 ACETYLTRANSFERASE COMPLEX. JRNL REF CELL REP V. 30 3996 2020 JRNL REFN ESSN 2211-1247 JRNL PMID 32209463 JRNL DOI 10.1016/J.CELREP.2020.03.003 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 40261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2154 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2963 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3317 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.66000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.005 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3439 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3065 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4694 ; 1.656 ; 1.634 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7078 ; 1.386 ; 1.566 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 427 ; 7.691 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;24.976 ;21.688 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 503 ;12.102 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.108 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 446 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3862 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 765 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1716 ; 3.103 ; 3.518 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1717 ; 3.102 ; 3.520 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2141 ; 4.140 ; 5.257 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6NFX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000235552. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97891 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42419 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 46.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 1.24200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDBID 3FEO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG-6000, 0.1 M SODIUM CITRATE, PH REMARK 280 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.30350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.36200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.30350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 62.36200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 UNK UNX A 715 LIES ON A SPECIAL POSITION. REMARK 375 UNK UNX A 729 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 139 REMARK 465 GLY A 140 REMARK 465 ILE A 356 REMARK 465 THR A 357 REMARK 465 LYS A 358 REMARK 465 LYS A 359 REMARK 465 GLN A 360 REMARK 465 GLU A 423 REMARK 465 ALA A 424 REMARK 465 ALA A 425 REMARK 465 GLY A 563 REMARK 465 SER A 564 REMARK 465 ALA A 565 REMARK 465 GLY A 566 REMARK 465 SER A 567 REMARK 465 ALA A 568 REMARK 465 GLY A 569 REMARK 465 SER A 570 REMARK 465 ALA A 571 REMARK 465 GLY A 572 REMARK 465 SER A 573 REMARK 465 ALA A 574 REMARK 465 GLY A 575 REMARK 465 SER A 576 REMARK 465 ALA A 577 REMARK 465 GLY A 578 REMARK 465 SER A 579 REMARK 465 ALA A 580 REMARK 465 GLN A 581 REMARK 465 GLY A 582 REMARK 465 PHE A 583 REMARK 465 VAL A 584 REMARK 465 SER A 585 REMARK 465 GLU A 604 REMARK 465 GLN A 605 REMARK 465 LEU A 606 REMARK 465 MET A 607 REMARK 465 GLY A 608 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 161 CD CE NZ REMARK 470 ASP A 171 CG OD1 OD2 REMARK 470 SER A 186 OG REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 LYS A 276 CD CE NZ REMARK 470 ARG A 297 NE CZ NH1 NH2 REMARK 470 GLU A 321 CG CD OE1 OE2 REMARK 470 GLU A 323 CD OE1 OE2 REMARK 470 ARG A 345 CD NE CZ NH1 NH2 REMARK 470 ARG A 350 NE NH1 NH2 REMARK 470 LYS A 352 CE NZ REMARK 470 ARG A 353 CG CD NE CZ NH1 NH2 REMARK 470 SER A 354 OG REMARK 470 ASP A 355 CA C O CB CG OD1 OD2 REMARK 470 ASP A 361 N CB CG OD1 OD2 REMARK 470 LYS A 373 CD CE NZ REMARK 470 LYS A 375 CD CE NZ REMARK 470 GLU A 376 CG CD OE1 OE2 REMARK 470 LYS A 385 CD CE NZ REMARK 470 LYS A 408 CD CE NZ REMARK 470 SER A 422 OG REMARK 470 ASP A 426 CG OD1 OD2 REMARK 470 SER A 428 OG REMARK 470 ASP A 429 CG OD1 OD2 REMARK 470 ARG A 457 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 461 CE NZ REMARK 470 LYS A 465 CD CE NZ REMARK 470 PHE A 467 CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 471 CD NE CZ NH1 NH2 REMARK 470 LYS A 481 CD CE NZ REMARK 470 ASP A 486 CG OD1 OD2 REMARK 470 GLU A 530 OE1 OE2 REMARK 470 GLN A 556 CD OE1 NE2 REMARK 470 SER A 562 CA C O CB OG REMARK 470 LYS A 586 CG CD CE NZ REMARK 470 SER A 603 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 386 CD GLU A 386 OE2 0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 168 30.54 -140.92 REMARK 500 ASN A 175 -8.53 81.00 REMARK 500 SER A 186 65.52 -117.36 REMARK 500 GLU A 213 -106.92 58.82 REMARK 500 CYS A 288 -8.81 88.21 REMARK 500 HIS A 298 77.82 -153.89 REMARK 500 ASP A 327 61.17 60.97 REMARK 500 GLU A 505 79.06 -151.89 REMARK 500 HIS A 519 -117.21 57.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 739 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 324 OD2 REMARK 620 2 THR A 326 O 93.8 REMARK 620 3 ASP A 327 O 171.4 85.4 REMARK 620 4 ASP A 328 OD1 79.0 77.5 92.5 REMARK 620 5 GLU A 505 OE1 125.6 135.3 58.8 125.5 REMARK 620 6 HOH A 887 O 88.0 171.6 94.0 110.9 39.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 739 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 740 DBREF 6NFX A 140 562 UNP Q05BQ5 MBTD1_HUMAN 140 562 DBREF 6NFX A 581 608 UNP Q9H2F5 EPC1_HUMAN 644 671 SEQADV 6NFX GLY A 139 UNP Q05BQ5 EXPRESSION TAG SEQADV 6NFX GLY A 563 UNP Q05BQ5 LINKER SEQADV 6NFX SER A 564 UNP Q05BQ5 LINKER SEQADV 6NFX ALA A 565 UNP Q05BQ5 LINKER SEQADV 6NFX GLY A 566 UNP Q05BQ5 LINKER SEQADV 6NFX SER A 567 UNP Q05BQ5 LINKER SEQADV 6NFX ALA A 568 UNP Q05BQ5 LINKER SEQADV 6NFX GLY A 569 UNP Q05BQ5 LINKER SEQADV 6NFX SER A 570 UNP Q05BQ5 LINKER SEQADV 6NFX ALA A 571 UNP Q05BQ5 LINKER SEQADV 6NFX GLY A 572 UNP Q05BQ5 LINKER SEQADV 6NFX SER A 573 UNP Q05BQ5 LINKER SEQADV 6NFX ALA A 574 UNP Q05BQ5 LINKER SEQADV 6NFX GLY A 575 UNP Q05BQ5 LINKER SEQADV 6NFX SER A 576 UNP Q05BQ5 LINKER SEQADV 6NFX ALA A 577 UNP Q05BQ5 LINKER SEQADV 6NFX GLY A 578 UNP Q05BQ5 LINKER SEQADV 6NFX SER A 579 UNP Q05BQ5 LINKER SEQADV 6NFX ALA A 580 UNP Q05BQ5 LINKER SEQRES 1 A 470 GLY GLY PHE SER TRP GLY ASN TYR ILE ASN SER ASN SER SEQRES 2 A 470 PHE ILE ALA ALA PRO VAL THR CYS PHE LYS HIS ALA PRO SEQRES 3 A 470 MET GLY THR CYS TRP GLY ASP ILE SER GLU ASN VAL ARG SEQRES 4 A 470 VAL GLU VAL PRO ASN THR ASP CYS SER LEU PRO THR LYS SEQRES 5 A 470 VAL PHE TRP ILE ALA GLY ILE VAL LYS LEU ALA GLY TYR SEQRES 6 A 470 ASN ALA LEU LEU ARG TYR GLU GLY PHE GLU ASN ASP SER SEQRES 7 A 470 GLY LEU ASP PHE TRP CYS ASN ILE CYS GLY SER ASP ILE SEQRES 8 A 470 HIS PRO VAL GLY TRP CYS ALA ALA SER GLY LYS PRO LEU SEQRES 9 A 470 VAL PRO PRO ARG THR ILE GLN HIS LYS TYR THR ASN TRP SEQRES 10 A 470 LYS ALA PHE LEU VAL LYS ARG LEU THR GLY ALA LYS THR SEQRES 11 A 470 LEU PRO PRO ASP PHE SER GLN LYS VAL SER GLU SER MET SEQRES 12 A 470 GLN TYR PRO PHE LYS PRO CYS MET ARG VAL GLU VAL VAL SEQRES 13 A 470 ASP LYS ARG HIS LEU CYS ARG THR ARG VAL ALA VAL VAL SEQRES 14 A 470 GLU SER VAL ILE GLY GLY ARG LEU ARG LEU VAL TYR GLU SEQRES 15 A 470 GLU SER GLU ASP ARG THR ASP ASP PHE TRP CYS HIS MET SEQRES 16 A 470 HIS SER PRO LEU ILE HIS HIS ILE GLY TRP SER ARG SER SEQRES 17 A 470 ILE GLY HIS ARG PHE LYS ARG SER ASP ILE THR LYS LYS SEQRES 18 A 470 GLN ASP GLY HIS PHE ASP THR PRO PRO HIS LEU PHE ALA SEQRES 19 A 470 LYS VAL LYS GLU VAL ASP GLN SER GLY GLU TRP PHE LYS SEQRES 20 A 470 GLU GLY MET LYS LEU GLU ALA ILE ASP PRO LEU ASN LEU SEQRES 21 A 470 SER THR ILE CYS VAL ALA THR ILE ARG LYS VAL LEU ALA SEQRES 22 A 470 ASP GLY PHE LEU MET ILE GLY ILE ASP GLY SER GLU ALA SEQRES 23 A 470 ALA ASP GLY SER ASP TRP PHE CYS TYR HIS ALA THR SER SEQRES 24 A 470 PRO SER ILE PHE PRO VAL GLY PHE CYS GLU ILE ASN MET SEQRES 25 A 470 ILE GLU LEU THR PRO PRO ARG GLY TYR THR LYS LEU PRO SEQRES 26 A 470 PHE LYS TRP PHE ASP TYR LEU ARG GLU THR GLY SER ILE SEQRES 27 A 470 ALA ALA PRO VAL LYS LEU PHE ASN LYS ASP VAL PRO ASN SEQRES 28 A 470 HIS GLY PHE ARG VAL GLY MET LYS LEU GLU ALA VAL ASP SEQRES 29 A 470 LEU MET GLU PRO ARG LEU ILE CYS VAL ALA THR VAL THR SEQRES 30 A 470 ARG ILE ILE HIS ARG LEU LEU ARG ILE HIS PHE ASP GLY SEQRES 31 A 470 TRP GLU GLU GLU TYR ASP GLN TRP VAL ASP CYS GLU SER SEQRES 32 A 470 PRO ASP LEU TYR PRO VAL GLY TRP CYS GLN LEU THR GLY SEQRES 33 A 470 TYR GLN LEU GLN PRO PRO ALA SER GLY SER ALA GLY SER SEQRES 34 A 470 ALA GLY SER ALA GLY SER ALA GLY SER ALA GLY SER ALA SEQRES 35 A 470 GLN GLY PHE VAL SER LYS THR LEU ASP SER ALA SER ALA SEQRES 36 A 470 GLN PHE ALA ALA SER ALA LEU VAL THR SER GLU GLN LEU SEQRES 37 A 470 MET GLY HET UNX A 701 1 HET UNX A 702 1 HET UNX A 703 1 HET UNX A 704 1 HET UNX A 705 1 HET UNX A 706 1 HET UNX A 707 1 HET UNX A 708 1 HET UNX A 709 1 HET UNX A 710 1 HET UNX A 711 1 HET UNX A 712 1 HET UNX A 713 1 HET UNX A 714 1 HET UNX A 715 1 HET UNX A 716 1 HET UNX A 717 1 HET UNX A 718 1 HET UNX A 719 1 HET UNX A 720 1 HET UNX A 721 1 HET UNX A 722 1 HET UNX A 723 1 HET UNX A 724 1 HET UNX A 725 1 HET UNX A 726 1 HET UNX A 727 1 HET UNX A 728 1 HET UNX A 729 1 HET UNX A 730 1 HET UNX A 731 1 HET UNX A 732 1 HET UNX A 733 1 HET UNX A 734 1 HET UNX A 735 1 HET UNX A 736 1 HET UNX A 737 1 HET UNX A 738 1 HET NA A 739 1 HET GOL A 740 6 HETNAM UNX UNKNOWN ATOM OR ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 UNX 38(X) FORMUL 40 NA NA 1+ FORMUL 41 GOL C3 H8 O3 FORMUL 42 HOH *87(H2 O) HELIX 1 AA1 SER A 142 SER A 151 1 10 HELIX 2 AA2 PRO A 156 PHE A 160 5 5 HELIX 3 AA3 MET A 165 TRP A 169 5 5 HELIX 4 AA4 GLY A 233 GLY A 239 1 7 HELIX 5 AA5 PRO A 245 GLN A 249 5 5 HELIX 6 AA6 ASN A 254 THR A 264 1 11 HELIX 7 AA7 ASP A 272 MET A 281 1 10 HELIX 8 AA8 GLY A 342 GLY A 348 1 7 HELIX 9 AA9 PRO A 367 PHE A 371 5 5 HELIX 10 AB1 GLY A 444 ASN A 449 1 6 HELIX 11 AB2 LYS A 465 GLY A 474 1 10 HELIX 12 AB3 PRO A 479 ASN A 484 5 6 HELIX 13 AB4 GLU A 530 ASP A 534 5 5 HELIX 14 AB5 GLY A 548 GLY A 554 1 7 HELIX 15 AB6 ASP A 589 SER A 598 1 10 SHEET 1 AA1 4 ARG A 177 PRO A 181 0 SHEET 2 AA1 4 PHE A 192 ALA A 201 -1 O ALA A 195 N VAL A 178 SHEET 3 AA1 4 ASN A 204 TYR A 209 -1 O ASN A 204 N ALA A 201 SHEET 4 AA1 4 PHE A 220 ASN A 223 -1 O PHE A 220 N LEU A 207 SHEET 1 AA2 4 PHE A 329 HIS A 332 0 SHEET 2 AA2 4 ARG A 314 TYR A 319 -1 N LEU A 315 O CYS A 331 SHEET 3 AA2 4 HIS A 298 ILE A 311 -1 N GLU A 308 O ARG A 316 SHEET 4 AA2 4 ARG A 350 PHE A 351 1 O ARG A 350 N THR A 302 SHEET 1 AA3 5 PHE A 329 HIS A 332 0 SHEET 2 AA3 5 ARG A 314 TYR A 319 -1 N LEU A 315 O CYS A 331 SHEET 3 AA3 5 HIS A 298 ILE A 311 -1 N GLU A 308 O ARG A 316 SHEET 4 AA3 5 MET A 289 ASP A 295 -1 N VAL A 291 O ALA A 305 SHEET 5 AA3 5 PHE A 364 ASP A 365 1 O PHE A 364 N ARG A 290 SHEET 1 AA4 5 PHE A 431 HIS A 434 0 SHEET 2 AA4 5 PHE A 414 ILE A 419 -1 N ILE A 417 O PHE A 431 SHEET 3 AA4 5 ASN A 397 VAL A 409 -1 N LYS A 408 O MET A 416 SHEET 4 AA4 5 LYS A 389 ASP A 394 -1 N ALA A 392 O CYS A 402 SHEET 5 AA4 5 ILE A 440 PHE A 441 -1 O PHE A 441 N GLU A 391 SHEET 1 AA5 4 PHE A 431 HIS A 434 0 SHEET 2 AA5 4 PHE A 414 ILE A 419 -1 N ILE A 417 O PHE A 431 SHEET 3 AA5 4 ASN A 397 VAL A 409 -1 N LYS A 408 O MET A 416 SHEET 4 AA5 4 LEU A 453 THR A 454 1 O THR A 454 N ILE A 401 SHEET 1 AA6 5 GLN A 535 ASP A 538 0 SHEET 2 AA6 5 LEU A 521 PHE A 526 -1 N LEU A 522 O VAL A 537 SHEET 3 AA6 5 ILE A 509 ILE A 518 -1 N THR A 513 O HIS A 525 SHEET 4 AA6 5 LYS A 497 VAL A 501 -1 N ALA A 500 O CYS A 510 SHEET 5 AA6 5 LEU A 544 TYR A 545 -1 O TYR A 545 N GLU A 499 SHEET 1 AA7 4 GLN A 535 ASP A 538 0 SHEET 2 AA7 4 LEU A 521 PHE A 526 -1 N LEU A 522 O VAL A 537 SHEET 3 AA7 4 ILE A 509 ILE A 518 -1 N THR A 513 O HIS A 525 SHEET 4 AA7 4 LEU A 557 GLN A 558 1 O GLN A 558 N ILE A 509 LINK OD2 ASP A 324 NA NA A 739 1555 1555 2.29 LINK O THR A 326 NA NA A 739 1555 1555 2.31 LINK O ASP A 327 NA NA A 739 1555 1555 2.33 LINK OD1 ASP A 328 NA NA A 739 1555 1555 2.74 LINK OE1 GLU A 505 NA NA A 739 1555 2556 2.48 LINK NA NA A 739 O HOH A 887 1555 1555 2.17 CISPEP 1 LEU A 462 PRO A 463 0 3.97 SITE 1 AC1 6 ASP A 324 THR A 326 ASP A 327 ASP A 328 SITE 2 AC1 6 GLU A 505 HOH A 887 SITE 1 AC2 5 GLU A 292 GLY A 342 SER A 344 ARG A 345 SITE 2 AC2 5 PHE A 351 CRYST1 68.607 124.724 70.057 90.00 92.88 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014576 0.000000 0.000734 0.00000 SCALE2 0.000000 0.008018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014292 0.00000