PDB Short entry for 6NG3 HEADER IMMUNE SYSTEM 21-DEC-18 6NG3 TITLE CRYSTAL STRUCTURE OF HUMAN CD160 AND HVEM COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD160 ANTIGEN,TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY COMPND 3 MEMBER 14; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: NATURAL KILLER CELL RECEPTOR BY55,HERPES VIRUS ENTRY COMPND 6 MEDIATOR A,HVEA,TUMOR NECROSIS FACTOR RECEPTOR-LIKE 2,TR2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD160, BY55, TNFRSF14, HVEA, HVEM, UNQ329/PRO509; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA ACANTHOPTERA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 51166 KEYWDS CD160, HVEM, BTLA, GD, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR W.LIU,J.BONANNO,S.C.ALMO REVDAT 6 11-OCT-23 6NG3 1 HETSYN LINK REVDAT 5 29-JUL-20 6NG3 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 18-DEC-19 6NG3 1 REMARK REVDAT 3 21-AUG-19 6NG3 1 JRNL REVDAT 2 10-JUL-19 6NG3 1 JRNL REVDAT 1 03-JUL-19 6NG3 0 JRNL AUTH W.LIU,S.C.GARRETT,E.V.FEDOROV,U.A.RAMAGOPAL,S.J.GARFORTH, JRNL AUTH 2 J.B.BONANNO,S.C.ALMO JRNL TITL STRUCTURAL BASIS OF CD160:HVEM RECOGNITION. JRNL REF STRUCTURE V. 27 1286 2019 JRNL REFN ISSN 0969-2126 JRNL PMID 31230945 JRNL DOI 10.1016/J.STR.2019.05.010 REMARK 2 REMARK 2 RESOLUTION. 2.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 6939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 344 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 493 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1537 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.03000 REMARK 3 B22 (A**2) : 3.03000 REMARK 3 B33 (A**2) : -6.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.268 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.388 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.344 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.046 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1655 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1517 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2241 ; 1.913 ; 2.022 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3531 ; 1.028 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 198 ; 7.407 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 63 ;35.667 ;23.651 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 275 ;20.246 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;24.399 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 264 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1774 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 347 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 807 ; 5.082 ; 6.988 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 806 ; 5.053 ; 6.986 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1000 ; 8.063 ;10.452 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1001 ; 8.065 ;10.457 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 848 ; 5.416 ; 7.556 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 849 ; 5.413 ; 7.563 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1242 ; 8.103 ;11.141 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1647 ;11.958 ;54.897 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1648 ;11.954 ;54.945 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6NG3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-19. REMARK 100 THE DEPOSITION ID IS D_1000238743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7332 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.17800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.55200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4FHQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH7.0, 30% (V/V) JEFFAMINE REMARK 280 ED-2001 PH7.0, AND 0.1 M SODIUM CITRATE TRIBASIC DIHYDRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.96500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 43.96500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.84900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.96500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.42450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.96500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.27350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.96500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 118.27350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.96500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.42450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 43.96500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 43.96500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.84900 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 43.96500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 43.96500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 78.84900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 43.96500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 118.27350 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 43.96500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 39.42450 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 43.96500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 39.42450 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 43.96500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 118.27350 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 43.96500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 43.96500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 78.84900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 83 REMARK 465 GLY A 84 REMARK 465 ILE A 85 REMARK 465 ASP A 86 REMARK 465 GLY A 87 REMARK 465 VAL A 88 REMARK 465 GLY A 89 REMARK 465 GLU A 90 REMARK 465 GLU A 134 REMARK 465 THR A 135 REMARK 465 GLY A 136 REMARK 465 GLY A 1019 REMARK 465 GLY A 1020 REMARK 465 GLY A 1021 REMARK 465 GLY A 1022 REMARK 465 SER A 1023 REMARK 465 GLY A 1024 REMARK 465 GLY A 1025 REMARK 465 GLY A 1026 REMARK 465 GLY A 1027 REMARK 465 SER A 1028 REMARK 465 GLY A 1029 REMARK 465 GLY A 1030 REMARK 465 GLY A 1031 REMARK 465 GLY A 1032 REMARK 465 SER A 1033 REMARK 465 GLY A 1034 REMARK 465 GLY A 1035 REMARK 465 GLY A 1036 REMARK 465 GLY A 1037 REMARK 465 SER A 1038 REMARK 465 LEU A 1039 REMARK 465 PRO A 1040 REMARK 465 GLY A 1132 REMARK 465 ASP A 1133 REMARK 465 HIS A 1134 REMARK 465 ALA A 1140 REMARK 465 TYR A 1141 REMARK 465 ALA A 1142 REMARK 465 THR A 1143 REMARK 465 GLY A 1144 REMARK 465 HIS A 1145 REMARK 465 HIS A 1146 REMARK 465 HIS A 1147 REMARK 465 HIS A 1148 REMARK 465 HIS A 1149 REMARK 465 HIS A 1150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 41 OG1 THR A 98 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ALA A 1066 O6 BMA B 4 8445 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 61 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A1113 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 65 50.77 -107.63 REMARK 500 ILE A1128 -35.31 -131.17 REMARK 500 REMARK 500 REMARK: NULL DBREF 6NG3 A 27 144 UNP O95971 BY55_HUMAN 27 144 DBREF 6NG3 A 1039 1143 UNP Q92956 TNR14_HUMAN 39 143 SEQADV 6NG3 GLY A 1019 UNP O95971 LINKER SEQADV 6NG3 GLY A 1020 UNP O95971 LINKER SEQADV 6NG3 GLY A 1021 UNP O95971 LINKER SEQADV 6NG3 GLY A 1022 UNP O95971 LINKER SEQADV 6NG3 SER A 1023 UNP O95971 LINKER SEQADV 6NG3 GLY A 1024 UNP O95971 LINKER SEQADV 6NG3 GLY A 1025 UNP O95971 LINKER SEQADV 6NG3 GLY A 1026 UNP O95971 LINKER SEQADV 6NG3 GLY A 1027 UNP O95971 LINKER SEQADV 6NG3 SER A 1028 UNP O95971 LINKER SEQADV 6NG3 GLY A 1029 UNP O95971 LINKER SEQADV 6NG3 GLY A 1030 UNP O95971 LINKER SEQADV 6NG3 GLY A 1031 UNP O95971 LINKER SEQADV 6NG3 GLY A 1032 UNP O95971 LINKER SEQADV 6NG3 SER A 1033 UNP O95971 LINKER SEQADV 6NG3 GLY A 1034 UNP O95971 LINKER SEQADV 6NG3 GLY A 1035 UNP O95971 LINKER SEQADV 6NG3 GLY A 1036 UNP O95971 LINKER SEQADV 6NG3 GLY A 1037 UNP O95971 LINKER SEQADV 6NG3 SER A 1038 UNP O95971 LINKER SEQADV 6NG3 GLY A 1144 UNP Q92956 EXPRESSION TAG SEQADV 6NG3 HIS A 1145 UNP Q92956 EXPRESSION TAG SEQADV 6NG3 HIS A 1146 UNP Q92956 EXPRESSION TAG SEQADV 6NG3 HIS A 1147 UNP Q92956 EXPRESSION TAG SEQADV 6NG3 HIS A 1148 UNP Q92956 EXPRESSION TAG SEQADV 6NG3 HIS A 1149 UNP Q92956 EXPRESSION TAG SEQADV 6NG3 HIS A 1150 UNP Q92956 EXPRESSION TAG SEQRES 1 A 250 ILE ASN ILE THR SER SER ALA SER GLN GLU GLY THR ARG SEQRES 2 A 250 LEU ASN LEU ILE CYS THR VAL TRP HIS LYS LYS GLU GLU SEQRES 3 A 250 ALA GLU GLY PHE VAL VAL PHE LEU CYS LYS ASP ARG SER SEQRES 4 A 250 GLY ASP CYS SER PRO GLU THR SER LEU LYS GLN LEU ARG SEQRES 5 A 250 LEU LYS ARG ASP PRO GLY ILE ASP GLY VAL GLY GLU ILE SEQRES 6 A 250 SER SER GLN LEU MET PHE THR ILE SER GLN VAL THR PRO SEQRES 7 A 250 LEU HIS SER GLY THR TYR GLN CYS CYS ALA ARG SER GLN SEQRES 8 A 250 LYS SER GLY ILE ARG LEU GLN GLY HIS PHE PHE SER ILE SEQRES 9 A 250 LEU PHE THR GLU THR GLY ASN TYR THR VAL THR GLY LEU SEQRES 10 A 250 LYS GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY SEQRES 11 A 250 GLY GLY SER GLY GLY GLY GLY SER LEU PRO SER CYS LYS SEQRES 12 A 250 GLU ASP GLU TYR PRO VAL GLY SER GLU CYS CYS PRO LYS SEQRES 13 A 250 CYS SER PRO GLY TYR ARG VAL LYS GLU ALA CYS GLY GLU SEQRES 14 A 250 LEU THR GLY THR VAL CYS GLU PRO CYS PRO PRO GLY THR SEQRES 15 A 250 TYR ILE ALA HIS LEU ASN GLY LEU SER LYS CYS LEU GLN SEQRES 16 A 250 CYS GLN MET CYS ASP PRO ALA MET GLY LEU ARG ALA SER SEQRES 17 A 250 ARG ASN CYS SER ARG THR GLU ASN ALA VAL CYS GLY CYS SEQRES 18 A 250 SER PRO GLY HIS PHE CYS ILE VAL GLN ASP GLY ASP HIS SEQRES 19 A 250 CYS ALA ALA CYS ARG ALA TYR ALA THR GLY HIS HIS HIS SEQRES 20 A 250 HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET BMA B 4 11 HET NAG C 1 14 HET NAG C 2 14 HET MG A1207 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 BMA 2(C6 H12 O6) FORMUL 4 MG MG 2+ HELIX 1 AA1 LYS A 49 ALA A 53 5 5 HELIX 2 AA2 SER A 69 SER A 73 5 5 HELIX 3 AA3 ASP A 1100 MET A 1103 5 4 SHEET 1 AA1 3 ASN A 28 GLU A 36 0 SHEET 2 AA1 3 ARG A 39 TRP A 47 -1 O ASN A 41 N SER A 34 SHEET 3 AA1 3 SER A 92 ILE A 99 -1 O SER A 93 N VAL A 46 SHEET 1 AA2 5 LYS A 75 LEU A 79 0 SHEET 2 AA2 5 PHE A 56 LYS A 62 -1 N VAL A 58 O LEU A 77 SHEET 3 AA2 5 GLY A 108 SER A 116 -1 O CYS A 113 N PHE A 59 SHEET 4 AA2 5 PHE A 128 LEU A 131 -1 O PHE A 128 N TYR A 110 SHEET 5 AA2 5 THR A 139 THR A 141 -1 O THR A 139 N LEU A 131 SHEET 1 AA3 6 LYS A 75 LEU A 79 0 SHEET 2 AA3 6 PHE A 56 LYS A 62 -1 N VAL A 58 O LEU A 77 SHEET 3 AA3 6 GLY A 108 SER A 116 -1 O CYS A 113 N PHE A 59 SHEET 4 AA3 6 ARG A 122 GLN A 124 -1 O LEU A 123 N ALA A 114 SHEET 5 AA3 6 THR A1073 PRO A1077 -1 O CYS A1075 N ARG A 122 SHEET 6 AA3 6 TYR A1061 GLU A1065 -1 N GLU A1065 O VAL A1074 SHEET 1 AA4 2 GLU A1046 VAL A1049 0 SHEET 2 AA4 2 GLU A1052 PRO A1055 -1 O GLU A1052 N VAL A1049 SHEET 1 AA5 2 THR A1082 TYR A1083 0 SHEET 2 AA5 2 LEU A1094 GLN A1095 -1 O LEU A1094 N TYR A1083 SHEET 1 AA6 2 LEU A1105 ARG A1109 0 SHEET 2 AA6 2 VAL A1118 CYS A1121 -1 O GLY A1120 N ARG A1106 SHEET 1 AA7 2 CYS A1127 VAL A1129 0 SHEET 2 AA7 2 ALA A1137 CYS A1138 -1 O ALA A1137 N ILE A1128 SSBOND 1 CYS A 44 CYS A 112 1555 1555 2.01 SSBOND 2 CYS A 61 CYS A 68 1555 1555 2.05 SSBOND 3 CYS A 1042 CYS A 1053 1555 1555 2.06 SSBOND 4 CYS A 1054 CYS A 1067 1555 1555 2.02 SSBOND 5 CYS A 1057 CYS A 1075 1555 1555 2.06 SSBOND 6 CYS A 1078 CYS A 1093 1555 1555 2.07 SSBOND 7 CYS A 1096 CYS A 1111 1555 1555 2.03 SSBOND 8 CYS A 1099 CYS A 1119 1555 1555 2.04 SSBOND 9 CYS A 1121 CYS A 1138 1555 1555 2.05 SSBOND 10 CYS A 1127 CYS A 1135 1555 1555 2.02 LINK ND2 ASN A 28 C1 NAG B 1 1555 1555 1.46 LINK ND2 ASN A1110 C1 NAG C 1 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.42 LINK O3 BMA B 3 C1 BMA B 4 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.47 CRYST1 87.930 87.930 157.698 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011373 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006341 0.00000