PDB Short entry for 6OAJ HEADER DNA BINDING PROTEIN/DNA 16-MAR-19 6OAJ TITLE HUAE34K 19BP SYM DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN HU-ALPHA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: HU-2,NS2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*CP*GP*GP*TP*TP*CP*AP*AP*TP*TP*GP*GP*CP*AP*CP*GP*CP*GP*C)-3'); COMPND 10 CHAIN: K; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(P*GP*CP*GP*CP*GP*TP*GP*CP*CP*AP*AP*TP*TP*GP*AP*AP*CP*CP*GP*C)-3'); COMPND 15 CHAIN: L; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: HUPA, B4000, JW3964; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 16 ORGANISM_TAXID: 562 KEYWDS NUCLEOID ASSOCIATED PROTEIN, DNA SUPERCOILING, HISTONE LIKE PROTEINS, KEYWDS 2 DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.G.REMESH,M.HAMMEL REVDAT 3 11-OCT-23 6OAJ 1 REMARK REVDAT 2 30-SEP-20 6OAJ 1 JRNL REVDAT 1 18-MAR-20 6OAJ 0 JRNL AUTH S.G.REMESH,S.C.VERMA,J.H.CHEN,A.A.EKMAN,C.A.LARABELL, JRNL AUTH 2 S.ADHYA,M.HAMMEL JRNL TITL NUCLEOID REMODELING DURING ENVIRONMENTAL ADAPTATION IS JRNL TITL 2 REGULATED BY HU-DEPENDENT DNA BUNDLING. JRNL REF NAT COMMUN V. 11 2905 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32518228 JRNL DOI 10.1038/S41467-020-16724-5 REMARK 2 REMARK 2 RESOLUTION. 4.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 4318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.314 REMARK 3 R VALUE (WORKING SET) : 0.312 REMARK 3 FREE R VALUE : 0.329 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.240 REMARK 3 FREE R VALUE TEST SET COUNT : 793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4939 - 7.4225 0.99 1152 127 0.2324 0.2426 REMARK 3 2 7.4225 - 5.8973 1.00 1158 129 0.3825 0.3608 REMARK 3 3 5.8973 - 5.1535 1.00 1196 131 0.3871 0.3819 REMARK 3 4 5.1535 - 4.6831 1.00 1150 134 0.3908 0.4258 REMARK 3 5 4.6831 - 4.3478 1.00 1158 137 0.3929 0.4856 REMARK 3 6 4.3478 - 4.0918 0.98 1140 135 0.4019 0.4646 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 48.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3028 REMARK 3 ANGLE : 1.275 4245 REMARK 3 CHIRALITY : 0.062 523 REMARK 3 PLANARITY : 0.006 398 REMARK 3 DIHEDRAL : 20.316 1702 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OAJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115820 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4331 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.092 REMARK 200 RESOLUTION RANGE LOW (A) : 40.492 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 1.94200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4YEX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA-MALONATE, PH 5.0, 12% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.30100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.84450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.17650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.84450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.30100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.17650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 57 REMARK 465 ARG A 58 REMARK 465 THR A 59 REMARK 465 GLY A 60 REMARK 465 ARG A 61 REMARK 465 ASN A 62 REMARK 465 PRO A 63 REMARK 465 GLN A 64 REMARK 465 THR A 65 REMARK 465 GLY A 66 REMARK 465 LYS A 67 REMARK 465 GLU A 68 REMARK 465 ILE A 69 REMARK 465 LYS A 70 REMARK 465 ILE A 71 REMARK 465 ALA A 72 REMARK 465 ALA A 73 REMARK 465 ALA A 74 REMARK 465 ASN A 75 REMARK 465 GLY B 60 REMARK 465 ARG B 61 REMARK 465 ASN B 62 REMARK 465 PRO B 63 REMARK 465 GLN B 64 REMARK 465 THR B 65 REMARK 465 GLY B 66 REMARK 465 LYS B 67 REMARK 465 GLU B 68 REMARK 465 ILE B 69 REMARK 465 LYS B 70 REMARK 465 THR C 59 REMARK 465 GLY C 60 REMARK 465 ARG C 61 REMARK 465 ASN C 62 REMARK 465 PRO C 63 REMARK 465 GLN C 64 REMARK 465 THR C 65 REMARK 465 GLY C 66 REMARK 465 LYS C 67 REMARK 465 GLU C 68 REMARK 465 ILE C 69 REMARK 465 LYS C 70 REMARK 465 ILE C 71 REMARK 465 ALA C 72 REMARK 465 ARG D 55 REMARK 465 ALA D 56 REMARK 465 GLU D 57 REMARK 465 ARG D 58 REMARK 465 THR D 59 REMARK 465 GLY D 60 REMARK 465 ARG D 61 REMARK 465 ASN D 62 REMARK 465 PRO D 63 REMARK 465 GLN D 64 REMARK 465 THR D 65 REMARK 465 GLY D 66 REMARK 465 LYS D 67 REMARK 465 GLU D 68 REMARK 465 ILE D 69 REMARK 465 LYS D 70 REMARK 465 ILE D 71 REMARK 465 ALA D 72 REMARK 465 ALA D 73 REMARK 465 LYS D 90 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 ASN B 53 CG OD1 ND2 REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 ARG B 58 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 71 CG1 CG2 CD1 REMARK 470 ASN B 75 CG OD1 ND2 REMARK 470 VAL B 76 CG1 CG2 REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 ARG C 58 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 90 CD CE NZ REMARK 470 LYS D 18 CE NZ REMARK 470 HIS D 54 CG ND1 CD2 CE1 NE2 REMARK 470 ASN D 75 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA GLU B 57 O ALA B 72 1.67 REMARK 500 O6 DG K 18 N4 DC L 2 1.85 REMARK 500 O ALA B 30 CG LYS B 34 1.88 REMARK 500 CA THR B 59 N ILE B 71 1.88 REMARK 500 O4 DT K 4 N6 DA L 16 1.96 REMARK 500 O6 DG K 16 N4 DC L 4 1.98 REMARK 500 O6 DG K 2 N4 DC L 18 2.01 REMARK 500 N4 DC K 6 O6 DG L 14 2.08 REMARK 500 N4 DC K 13 O6 DG L 7 2.10 REMARK 500 O6 DG K 3 N4 DC L 17 2.11 REMARK 500 N6 DA K 7 O4 DT L 13 2.18 REMARK 500 OG1 THR C 49 OP1 DT K 9 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT K 10 C1' DT K 10 N1 0.124 REMARK 500 DC K 15 O3' DC K 15 C3' -0.041 REMARK 500 DC L 2 O3' DC L 2 C3' -0.055 REMARK 500 DG L 7 O3' DG L 7 C3' -0.040 REMARK 500 DA L 10 O3' DA L 10 C3' -0.038 REMARK 500 DA L 16 C5' DA L 16 C4' 0.054 REMARK 500 DC L 18 O3' DC L 18 C3' -0.066 REMARK 500 DC L 18 C1' DC L 18 N1 0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT K 10 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC K 13 C3' - C2' - C1' ANGL. DEV. = -6.5 DEGREES REMARK 500 DC K 13 O4' - C1' - N1 ANGL. DEV. = 5.5 DEGREES REMARK 500 DA K 14 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DA K 14 C4' - C3' - C2' ANGL. DEV. = -4.4 DEGREES REMARK 500 DC K 15 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG K 18 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG L 5 O5' - P - OP2 ANGL. DEV. = 8.3 DEGREES REMARK 500 DG L 5 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DG L 7 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC L 8 O5' - P - OP2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 -19.46 -48.13 REMARK 500 ALA A 84 -7.57 -57.04 REMARK 500 PHE B 47 -76.64 -95.92 REMARK 500 ALA B 56 -128.70 -45.44 REMARK 500 PHE C 47 -60.38 -132.96 REMARK 500 ARG C 55 65.88 -155.48 REMARK 500 GLU C 57 -157.39 23.57 REMARK 500 SER C 81 159.26 -48.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG C 55 -11.22 REMARK 500 REMARK 500 REMARK: NULL DBREF 6OAJ A 1 90 UNP P0ACF0 DBHA_ECOLI 1 90 DBREF 6OAJ B 1 90 UNP P0ACF0 DBHA_ECOLI 1 90 DBREF 6OAJ C 1 90 UNP P0ACF0 DBHA_ECOLI 1 90 DBREF 6OAJ D 1 90 UNP P0ACF0 DBHA_ECOLI 1 90 DBREF 6OAJ K 1 19 PDB 6OAJ 6OAJ 1 19 DBREF 6OAJ L 1 20 PDB 6OAJ 6OAJ 1 20 SEQADV 6OAJ LYS A 34 UNP P0ACF0 GLU 34 ENGINEERED MUTATION SEQADV 6OAJ LYS B 34 UNP P0ACF0 GLU 34 ENGINEERED MUTATION SEQADV 6OAJ LYS C 34 UNP P0ACF0 GLU 34 ENGINEERED MUTATION SEQADV 6OAJ LYS D 34 UNP P0ACF0 GLU 34 ENGINEERED MUTATION SEQRES 1 A 90 MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU LYS SEQRES 2 A 90 ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU GLU SEQRES 3 A 90 SER THR LEU ALA ALA ILE THR LYS SER LEU LYS GLU GLY SEQRES 4 A 90 ASP ALA VAL GLN LEU VAL GLY PHE GLY THR PHE LYS VAL SEQRES 5 A 90 ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN THR SEQRES 6 A 90 GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO ALA SEQRES 7 A 90 PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS SEQRES 1 B 90 MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU LYS SEQRES 2 B 90 ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU GLU SEQRES 3 B 90 SER THR LEU ALA ALA ILE THR LYS SER LEU LYS GLU GLY SEQRES 4 B 90 ASP ALA VAL GLN LEU VAL GLY PHE GLY THR PHE LYS VAL SEQRES 5 B 90 ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN THR SEQRES 6 B 90 GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO ALA SEQRES 7 B 90 PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS SEQRES 1 C 90 MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU LYS SEQRES 2 C 90 ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU GLU SEQRES 3 C 90 SER THR LEU ALA ALA ILE THR LYS SER LEU LYS GLU GLY SEQRES 4 C 90 ASP ALA VAL GLN LEU VAL GLY PHE GLY THR PHE LYS VAL SEQRES 5 C 90 ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN THR SEQRES 6 C 90 GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO ALA SEQRES 7 C 90 PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS SEQRES 1 D 90 MET ASN LYS THR GLN LEU ILE ASP VAL ILE ALA GLU LYS SEQRES 2 D 90 ALA GLU LEU SER LYS THR GLN ALA LYS ALA ALA LEU GLU SEQRES 3 D 90 SER THR LEU ALA ALA ILE THR LYS SER LEU LYS GLU GLY SEQRES 4 D 90 ASP ALA VAL GLN LEU VAL GLY PHE GLY THR PHE LYS VAL SEQRES 5 D 90 ASN HIS ARG ALA GLU ARG THR GLY ARG ASN PRO GLN THR SEQRES 6 D 90 GLY LYS GLU ILE LYS ILE ALA ALA ALA ASN VAL PRO ALA SEQRES 7 D 90 PHE VAL SER GLY LYS ALA LEU LYS ASP ALA VAL LYS SEQRES 1 K 19 DC DG DG DT DT DC DA DA DT DT DG DG DC SEQRES 2 K 19 DA DC DG DC DG DC SEQRES 1 L 20 DG DC DG DC DG DT DG DC DC DA DA DT DT SEQRES 2 L 20 DG DA DA DC DC DG DC HELIX 1 AA1 ASN A 2 ALA A 14 1 13 HELIX 2 AA2 SER A 17 GLY A 39 1 23 HELIX 3 AA3 GLY A 82 LYS A 86 5 5 HELIX 4 AA4 ASN B 2 GLU B 15 1 14 HELIX 5 AA5 THR B 19 GLU B 38 1 20 HELIX 6 AA6 GLY B 82 ALA B 88 1 7 HELIX 7 AA7 ASN C 2 ALA C 14 1 13 HELIX 8 AA8 SER C 17 GLU C 38 1 22 HELIX 9 AA9 GLY C 82 ALA C 88 1 7 HELIX 10 AB1 ASN D 2 ALA D 14 1 13 HELIX 11 AB2 SER D 17 GLU D 38 1 22 HELIX 12 AB3 GLY D 82 ALA D 88 1 7 SHEET 1 AA1 3 VAL A 42 LEU A 44 0 SHEET 2 AA1 3 GLY A 48 VAL A 52 -1 O GLY A 48 N LEU A 44 SHEET 3 AA1 3 PRO A 77 VAL A 80 -1 O ALA A 78 N LYS A 51 SHEET 1 AA2 3 VAL B 42 LEU B 44 0 SHEET 2 AA2 3 GLY B 48 ARG B 55 -1 O GLY B 48 N LEU B 44 SHEET 3 AA2 3 ALA B 74 SER B 81 -1 O ALA B 78 N LYS B 51 SHEET 1 AA3 3 VAL C 42 LEU C 44 0 SHEET 2 AA3 3 GLY C 48 HIS C 54 -1 O PHE C 50 N VAL C 42 SHEET 3 AA3 3 ASN C 75 SER C 81 -1 O ALA C 78 N LYS C 51 SHEET 1 AA4 3 VAL D 42 LEU D 44 0 SHEET 2 AA4 3 GLY D 48 ASN D 53 -1 O PHE D 50 N VAL D 42 SHEET 3 AA4 3 VAL D 76 SER D 81 -1 O VAL D 76 N ASN D 53 CRYST1 64.602 86.353 91.689 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015479 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011580 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010906 0.00000