PDB Short entry for 6OD4 HEADER TRANSCRIPTION/DNA 25-MAR-19 6OD4 TITLE HUMAN TCF4 C-TERMINAL BHLH DOMAIN IN COMPLEX WITH 11-BP TITLE 2 OLIGONUCLEOTIDE CONTAINING E-BOX SEQUENCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR 4; COMPND 3 CHAIN: A, B, G, H; COMPND 4 FRAGMENT: C-TERMINAL BHLH DOMAIN (UNP RESIDUES 405-464); COMPND 5 SYNONYM: TCF-4, CLASS B BASIC HELIX-LOOP-HELIX PROTEIN 19, BHLHB19, COMPND 6 IMMUNOGLOBULIN TRANSCRIPTION FACTOR 2, ITF-2, SL3-3 ENHANCER FACTOR COMPND 7 2, SEF-2; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*TP*AP*CP*AP*CP*GP*TP*GP*TP*A)-3'); COMPND 11 CHAIN: X, W; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TCF4, BHLHB19, ITF2, SEF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODON PLUS(DE3)-RIL; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS PROTEIN-DNA COMPLEX, TRANSCRIPTION FACTOR, BHTH, E-BOX, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG,J.YANG REVDAT 4 11-OCT-23 6OD4 1 REMARK REVDAT 3 01-JAN-20 6OD4 1 REMARK REVDAT 2 30-OCT-19 6OD4 1 JRNL REVDAT 1 29-MAY-19 6OD4 0 JRNL AUTH J.YANG,J.R.HORTON,J.LI,Y.HUANG,X.ZHANG,R.M.BLUMENTHAL, JRNL AUTH 2 X.CHENG JRNL TITL STRUCTURAL BASIS FOR PREFERENTIAL BINDING OF HUMAN TCF4 TO JRNL TITL 2 DNA CONTAINING 5-CARBOXYLCYTOSINE. JRNL REF NUCLEIC ACIDS RES. V. 47 8375 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31081034 JRNL DOI 10.1093/NAR/GKZ381 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 25959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8293 - 3.5333 0.97 2861 156 0.1923 0.2575 REMARK 3 2 3.5333 - 2.8046 1.00 2915 149 0.2342 0.2279 REMARK 3 3 2.8046 - 2.4502 0.96 2831 148 0.2252 0.2666 REMARK 3 4 2.4502 - 2.2261 0.97 2843 153 0.2272 0.2928 REMARK 3 5 2.2261 - 2.0666 0.99 2898 153 0.2383 0.2875 REMARK 3 6 2.0666 - 1.9448 0.99 2916 152 0.2616 0.2737 REMARK 3 7 1.9448 - 1.8474 0.97 2828 146 0.2852 0.3283 REMARK 3 8 1.8474 - 1.7669 0.88 2628 137 0.3068 0.3722 REMARK 3 9 1.7669 - 1.6989 0.67 1935 110 0.3259 0.4161 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2225 REMARK 3 ANGLE : 0.423 3080 REMARK 3 CHIRALITY : 0.027 375 REMARK 3 PLANARITY : 0.002 325 REMARK 3 DIHEDRAL : 18.605 1310 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 567 THROUGH 597 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0017 -18.2139 -29.6092 REMARK 3 T TENSOR REMARK 3 T11: 0.4190 T22: 0.3001 REMARK 3 T33: 0.3489 T12: 0.0898 REMARK 3 T13: 0.0898 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 2.8787 L22: 2.9365 REMARK 3 L33: 1.9189 L12: 0.5844 REMARK 3 L13: 0.3541 L23: -1.0942 REMARK 3 S TENSOR REMARK 3 S11: -0.1412 S12: 0.1356 S13: -0.4061 REMARK 3 S21: -0.3596 S22: 0.0375 S23: -0.9621 REMARK 3 S31: 0.4790 S32: -0.0076 S33: 0.1733 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 598 THROUGH 606 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3699 1.9671 -25.8731 REMARK 3 T TENSOR REMARK 3 T11: 0.6240 T22: 0.5975 REMARK 3 T33: 0.5613 T12: -0.1920 REMARK 3 T13: -0.1628 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.3576 L22: 1.2502 REMARK 3 L33: 6.5972 L12: 0.4040 REMARK 3 L13: -1.6000 L23: -1.9710 REMARK 3 S TENSOR REMARK 3 S11: 0.5413 S12: -0.5804 S13: -0.0871 REMARK 3 S21: 1.2575 S22: -0.4340 S23: -1.0172 REMARK 3 S31: -1.0172 S32: 2.0407 S33: -0.0027 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 607 THROUGH 627 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3931 4.8367 -32.8804 REMARK 3 T TENSOR REMARK 3 T11: 0.2387 T22: 0.2206 REMARK 3 T33: 0.3054 T12: 0.0308 REMARK 3 T13: 0.0144 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 6.0235 L22: 4.0628 REMARK 3 L33: 5.1324 L12: -0.5990 REMARK 3 L13: 1.7001 L23: -4.0547 REMARK 3 S TENSOR REMARK 3 S11: -0.1712 S12: 0.2447 S13: 0.7404 REMARK 3 S21: 0.4146 S22: 0.2548 S23: 0.0602 REMARK 3 S31: -0.5987 S32: -0.3035 S33: -0.0223 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 567 THROUGH 597 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6580 -9.0011 -19.1070 REMARK 3 T TENSOR REMARK 3 T11: 0.3762 T22: 0.2937 REMARK 3 T33: 0.2640 T12: 0.0469 REMARK 3 T13: 0.1044 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 3.3584 L22: 5.5819 REMARK 3 L33: 3.4163 L12: -0.9305 REMARK 3 L13: 1.4332 L23: -4.4906 REMARK 3 S TENSOR REMARK 3 S11: -0.2303 S12: -0.3551 S13: 0.2493 REMARK 3 S21: 0.6836 S22: 0.2325 S23: -0.0576 REMARK 3 S31: -0.3604 S32: -0.8275 S33: -0.2122 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 598 THROUGH 606 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8013 -9.3099 -39.3653 REMARK 3 T TENSOR REMARK 3 T11: 0.6037 T22: 0.4670 REMARK 3 T33: 0.5121 T12: -0.1709 REMARK 3 T13: -0.0219 T23: -0.0829 REMARK 3 L TENSOR REMARK 3 L11: 4.9239 L22: 2.9813 REMARK 3 L33: 4.5971 L12: -3.8621 REMARK 3 L13: 3.9484 L23: -2.5362 REMARK 3 S TENSOR REMARK 3 S11: 0.5338 S12: -0.0864 S13: -0.5605 REMARK 3 S21: -1.0236 S22: -0.4248 S23: 1.1854 REMARK 3 S31: 1.2771 S32: -0.7356 S33: -0.8015 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 607 THROUGH 627 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0193 -1.8111 -40.8811 REMARK 3 T TENSOR REMARK 3 T11: 0.1657 T22: 0.3041 REMARK 3 T33: 0.2084 T12: 0.0210 REMARK 3 T13: 0.0439 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 5.5672 L22: 3.4594 REMARK 3 L33: 7.8872 L12: 0.0809 REMARK 3 L13: 0.3056 L23: -3.1870 REMARK 3 S TENSOR REMARK 3 S11: -0.0703 S12: 0.7386 S13: 0.4173 REMARK 3 S21: -0.4185 S22: -0.2210 S23: -0.4982 REMARK 3 S31: 0.1653 S32: 0.1349 S33: 0.2830 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 573 THROUGH 597 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7842 9.9224 -15.9990 REMARK 3 T TENSOR REMARK 3 T11: 0.4520 T22: 0.2732 REMARK 3 T33: 0.3830 T12: -0.0202 REMARK 3 T13: -0.1172 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 5.7241 L22: 7.6260 REMARK 3 L33: 3.8146 L12: 0.5129 REMARK 3 L13: -0.7241 L23: -5.1492 REMARK 3 S TENSOR REMARK 3 S11: 0.1328 S12: 0.5540 S13: -0.2452 REMARK 3 S21: -1.0719 S22: 0.2598 S23: 0.5034 REMARK 3 S31: 0.6180 S32: -0.9161 S33: -0.2588 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 598 THROUGH 628 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2050 7.0132 1.1786 REMARK 3 T TENSOR REMARK 3 T11: 0.1906 T22: 0.3869 REMARK 3 T33: 0.2814 T12: -0.0421 REMARK 3 T13: -0.0108 T23: -0.0394 REMARK 3 L TENSOR REMARK 3 L11: 8.5773 L22: 3.4137 REMARK 3 L33: 9.6937 L12: -0.3616 REMARK 3 L13: 0.6519 L23: -3.0447 REMARK 3 S TENSOR REMARK 3 S11: -0.1185 S12: -0.9933 S13: -0.0944 REMARK 3 S21: 0.2147 S22: 0.2424 S23: 0.3055 REMARK 3 S31: -0.1738 S32: -0.5990 S33: -0.1100 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 574 THROUGH 597 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1599 16.5144 -6.8916 REMARK 3 T TENSOR REMARK 3 T11: 0.4247 T22: 0.4560 REMARK 3 T33: 0.2526 T12: -0.0743 REMARK 3 T13: 0.0053 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 4.4233 L22: 1.8509 REMARK 3 L33: 6.1446 L12: 0.2077 REMARK 3 L13: -0.4187 L23: -2.0353 REMARK 3 S TENSOR REMARK 3 S11: 0.2734 S12: -0.5516 S13: 0.2498 REMARK 3 S21: 0.3508 S22: -0.2791 S23: -0.8553 REMARK 3 S31: -1.0847 S32: 0.3419 S33: -0.1795 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 598 THROUGH 606 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0029 2.9221 -12.7134 REMARK 3 T TENSOR REMARK 3 T11: 0.5644 T22: 0.7658 REMARK 3 T33: 0.6707 T12: 0.0679 REMARK 3 T13: 0.0600 T23: 0.0593 REMARK 3 L TENSOR REMARK 3 L11: 0.8022 L22: 5.6590 REMARK 3 L33: 2.0114 L12: -0.3738 REMARK 3 L13: 0.5569 L23: -7.9337 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: 0.7296 S13: -0.6318 REMARK 3 S21: -0.6876 S22: -1.5397 S23: -1.6595 REMARK 3 S31: 0.5548 S32: 1.2969 S33: 1.3829 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 607 THROUGH 628 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4011 -1.1960 -5.7223 REMARK 3 T TENSOR REMARK 3 T11: 0.2342 T22: 0.3261 REMARK 3 T33: 0.4129 T12: -0.0166 REMARK 3 T13: -0.0428 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 8.1793 L22: 3.6953 REMARK 3 L33: 4.1247 L12: 2.1656 REMARK 3 L13: -2.4954 L23: -2.0305 REMARK 3 S TENSOR REMARK 3 S11: -0.1143 S12: -0.1490 S13: -1.2873 REMARK 3 S21: -0.1675 S22: -0.0054 S23: -0.3067 REMARK 3 S31: 0.4971 S32: 0.0108 S33: 0.0646 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'X' AND (RESID 2 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9924 -20.9911 -18.2185 REMARK 3 T TENSOR REMARK 3 T11: 0.5308 T22: 0.2550 REMARK 3 T33: 0.3452 T12: 0.0261 REMARK 3 T13: 0.0709 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 3.3822 L22: 8.7178 REMARK 3 L33: 9.7538 L12: 3.4200 REMARK 3 L13: 2.0645 L23: 0.9233 REMARK 3 S TENSOR REMARK 3 S11: -0.0559 S12: 0.0401 S13: -1.0391 REMARK 3 S21: -0.0612 S22: 0.3504 S23: -0.7791 REMARK 3 S31: 0.1410 S32: 0.1248 S33: -0.2645 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'W' AND (RESID 2 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4295 -20.8414 -18.4520 REMARK 3 T TENSOR REMARK 3 T11: 0.4999 T22: 0.3076 REMARK 3 T33: 0.2232 T12: 0.0853 REMARK 3 T13: 0.0192 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 3.2401 L22: 8.0207 REMARK 3 L33: 9.9140 L12: 1.1348 REMARK 3 L13: 1.4558 L23: 1.1387 REMARK 3 S TENSOR REMARK 3 S11: -0.2461 S12: -0.7252 S13: -0.2995 REMARK 3 S21: 0.2595 S22: 0.1261 S23: -0.1663 REMARK 3 S31: -0.1027 S32: -0.8049 S33: 0.1139 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6OD4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26021 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.699 REMARK 200 RESOLUTION RANGE LOW (A) : 41.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.71100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2QL2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, 10% 2-PROPANOL, 0.1 M REMARK 280 SODIUM CITRATE TRIBASIC DIHYDRATE, PH 5.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, X, W REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 628 REMARK 465 ARG B 628 REMARK 465 HIS G 567 REMARK 465 MET G 568 REMARK 465 ARG G 569 REMARK 465 ARG G 570 REMARK 465 MET G 571 REMARK 465 ALA G 572 REMARK 465 LYS G 600 REMARK 465 SER G 601 REMARK 465 ASP G 602 REMARK 465 HIS H 567 REMARK 465 MET H 568 REMARK 465 ARG H 569 REMARK 465 ARG H 570 REMARK 465 MET H 571 REMARK 465 ALA H 572 REMARK 465 ASN H 573 REMARK 465 SER H 601 REMARK 465 ASP H 602 REMARK 465 DT X 1 REMARK 465 DT W 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 567 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 576 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 579 CG CD1 CD2 REMARK 470 ARG A 582 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 600 CG CD CE NZ REMARK 470 SER A 601 OG REMARK 470 ASP A 602 CG OD1 OD2 REMARK 470 LYS A 603 CG CD CE NZ REMARK 470 HIS B 567 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 569 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 576 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 586 CG CD OE1 OE2 REMARK 470 LYS B 600 CG CD CE NZ REMARK 470 SER B 601 OG REMARK 470 ASP B 602 CG OD1 OD2 REMARK 470 LYS B 603 CG CD CE NZ REMARK 470 ASN G 573 CG OD1 ND2 REMARK 470 ASN G 574 CG OD1 ND2 REMARK 470 GLU G 577 CG CD OE1 OE2 REMARK 470 ARG G 582 CG CD NE CZ NH1 NH2 REMARK 470 ASP G 583 CG OD1 OD2 REMARK 470 GLU G 586 CG CD OE1 OE2 REMARK 470 LYS G 603 CG CD CE NZ REMARK 470 GLU G 627 CG CD OE1 OE2 REMARK 470 ARG G 628 CG CD NE CZ NH1 NH2 REMARK 470 ASN H 574 CG OD1 ND2 REMARK 470 GLU H 577 CG CD OE1 OE2 REMARK 470 ARG H 578 CG CD NE CZ NH1 NH2 REMARK 470 ARG H 582 CG CD NE CZ NH1 NH2 REMARK 470 GLU H 586 CG CD OE1 OE2 REMARK 470 LYS H 600 CG CD CE NZ REMARK 470 LYS H 603 CG CD CE NZ REMARK 470 GLU H 627 CG CD OE1 OE2 REMARK 470 ARG H 628 CG CD NE CZ NH1 NH2 REMARK 470 DT X 2 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU H 599 -62.56 -129.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO W 201 DBREF 6OD4 A 569 628 UNP P15884 ITF2_HUMAN 405 464 DBREF 6OD4 B 569 628 UNP P15884 ITF2_HUMAN 405 464 DBREF 6OD4 G 569 628 UNP P15884 ITF2_HUMAN 405 464 DBREF 6OD4 H 569 628 UNP P15884 ITF2_HUMAN 405 464 DBREF 6OD4 X 1 11 PDB 6OD4 6OD4 1 11 DBREF 6OD4 W 1 11 PDB 6OD4 6OD4 1 11 SEQADV 6OD4 HIS A 567 UNP P15884 EXPRESSION TAG SEQADV 6OD4 MET A 568 UNP P15884 EXPRESSION TAG SEQADV 6OD4 HIS B 567 UNP P15884 EXPRESSION TAG SEQADV 6OD4 MET B 568 UNP P15884 EXPRESSION TAG SEQADV 6OD4 HIS G 567 UNP P15884 EXPRESSION TAG SEQADV 6OD4 MET G 568 UNP P15884 EXPRESSION TAG SEQADV 6OD4 HIS H 567 UNP P15884 EXPRESSION TAG SEQADV 6OD4 MET H 568 UNP P15884 EXPRESSION TAG SEQRES 1 A 62 HIS MET ARG ARG MET ALA ASN ASN ALA ARG GLU ARG LEU SEQRES 2 A 62 ARG VAL ARG ASP ILE ASN GLU ALA PHE LYS GLU LEU GLY SEQRES 3 A 62 ARG MET VAL GLN LEU HIS LEU LYS SER ASP LYS PRO GLN SEQRES 4 A 62 THR LYS LEU LEU ILE LEU HIS GLN ALA VAL ALA VAL ILE SEQRES 5 A 62 LEU SER LEU GLU GLN GLN VAL ARG GLU ARG SEQRES 1 B 62 HIS MET ARG ARG MET ALA ASN ASN ALA ARG GLU ARG LEU SEQRES 2 B 62 ARG VAL ARG ASP ILE ASN GLU ALA PHE LYS GLU LEU GLY SEQRES 3 B 62 ARG MET VAL GLN LEU HIS LEU LYS SER ASP LYS PRO GLN SEQRES 4 B 62 THR LYS LEU LEU ILE LEU HIS GLN ALA VAL ALA VAL ILE SEQRES 5 B 62 LEU SER LEU GLU GLN GLN VAL ARG GLU ARG SEQRES 1 G 62 HIS MET ARG ARG MET ALA ASN ASN ALA ARG GLU ARG LEU SEQRES 2 G 62 ARG VAL ARG ASP ILE ASN GLU ALA PHE LYS GLU LEU GLY SEQRES 3 G 62 ARG MET VAL GLN LEU HIS LEU LYS SER ASP LYS PRO GLN SEQRES 4 G 62 THR LYS LEU LEU ILE LEU HIS GLN ALA VAL ALA VAL ILE SEQRES 5 G 62 LEU SER LEU GLU GLN GLN VAL ARG GLU ARG SEQRES 1 H 62 HIS MET ARG ARG MET ALA ASN ASN ALA ARG GLU ARG LEU SEQRES 2 H 62 ARG VAL ARG ASP ILE ASN GLU ALA PHE LYS GLU LEU GLY SEQRES 3 H 62 ARG MET VAL GLN LEU HIS LEU LYS SER ASP LYS PRO GLN SEQRES 4 H 62 THR LYS LEU LEU ILE LEU HIS GLN ALA VAL ALA VAL ILE SEQRES 5 H 62 LEU SER LEU GLU GLN GLN VAL ARG GLU ARG SEQRES 1 X 11 DT DT DA DC DA DC DG DT DG DT DA SEQRES 1 W 11 DT DT DA DC DA DC DG DT DG DT DA HET EDO W 201 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *40(H2 O) HELIX 1 AA1 HIS A 567 LEU A 597 1 31 HELIX 2 AA2 THR A 606 GLU A 627 1 22 HELIX 3 AA3 MET B 568 LEU B 597 1 30 HELIX 4 AA4 THR B 606 ARG B 626 1 21 HELIX 5 AA5 ASN G 574 GLN G 596 1 23 HELIX 6 AA6 THR G 606 GLU G 627 1 22 HELIX 7 AA7 ALA H 575 GLN H 596 1 22 HELIX 8 AA8 THR H 606 GLU H 627 1 22 SITE 1 AC1 4 DG W 9 DT W 10 DA X 5 DC X 6 CRYST1 36.614 43.602 43.557 97.17 102.56 102.53 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027312 0.006072 0.007299 0.00000 SCALE2 0.000000 0.023495 0.004313 0.00000 SCALE3 0.000000 0.000000 0.023914 0.00000