PDB Short entry for 6OE7 HEADER DNA BINDING PROTEIN/DNA 27-MAR-19 6OE7 TITLE CRYSTAL STRUCTURE OF HMCES CROSS-LINKED TO DNA ABASIC SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EMBRYONIC STEM CELL-SPECIFIC 5-HYDROXYMETHYLCYTOSINE- COMPND 3 BINDING PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SRAP DOMAIN (UNP RESIDUES 2-270); COMPND 6 SYNONYM: ES CELL-SPECIFIC 5HMC-BINDING PROTEIN,PUTATIVE PEPTIDASE COMPND 7 SRAPD1,SRAP DOMAIN-CONTAINING PROTEIN 1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*GP*TP*CP*TP*GP*G)-3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*CP*AP*GP*AP*CP*GP*TP*(DRZ)P*GP*TP*T)-3'); COMPND 15 CHAIN: B; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HMCES, C3ORF37, DC12, SRAPD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS SRAP DOMAIN, DNA-BINDING, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, HMCES, PROTEIN-DNA COMPLEX, DNA DAMAGE PROTEIN, 3' KEYWDS 3 OVERHANG, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.HALABELIAN,Y.LI,H.ZENG,C.BOUNTRA,A.M.EDWARDS,C.H.ARROWSMITH, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 17-JUL-19 6OE7 1 JRNL REVDAT 3 10-JUL-19 6OE7 1 JRNL REVDAT 2 26-JUN-19 6OE7 1 JRNL REVDAT 1 24-APR-19 6OE7 0 JRNL AUTH L.HALABELIAN,M.RAVICHANDRAN,Y.LI,H.ZENG,A.RAO,L.ARAVIND, JRNL AUTH 2 C.H.ARROWSMITH JRNL TITL STRUCTURAL BASIS OF HMCES INTERACTIONS WITH ABASIC DNA AND JRNL TITL 2 MULTIVALENT SUBSTRATE RECOGNITION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 607 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 31235913 JRNL DOI 10.1038/S41594-019-0246-6 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 19914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1036 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2052 REMARK 3 NUCLEIC ACID ATOMS : 293 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.16000 REMARK 3 B22 (A**2) : 3.11000 REMARK 3 B33 (A**2) : -5.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.212 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.014 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6OE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1000240524. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978900 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20951 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.86100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.1 M POTASSIUM CHLORIDE, REMARK 280 0.1 M BIS-TRIS, 0.05 M MAGNESIUM CHLORIDE, PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 24.20201 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.76700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.77566 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 24.20201 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.76700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 74.77566 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -24.20201 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -25.76700 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -74.77566 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 149 REMARK 465 GLU A 150 REMARK 465 LYS A 151 REMARK 465 SER A 152 REMARK 465 GLY A 153 REMARK 465 SER A 154 REMARK 465 ILE A 155 REMARK 465 GLY A 156 REMARK 465 ALA A 157 REMARK 465 ALA A 158 REMARK 465 ASP A 159 REMARK 465 ALA A 271 REMARK 465 GLU A 272 REMARK 465 ASN A 273 REMARK 465 LEU A 274 REMARK 465 TYR A 275 REMARK 465 PHE A 276 REMARK 465 GLN A 277 REMARK 465 DG B 110 REMARK 465 DT B 111 REMARK 465 DT B 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 61 CD CE NZ REMARK 470 LYS A 109 CD CE NZ REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 ASN A 163 CG OD1 ND2 REMARK 470 TRP A 164 CD1 CD2 NE1 CE2 CE3 CZ2 CZ3 REMARK 470 TRP A 164 CH2 REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 LYS A 204 CD CE NZ REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 130 NE CZ NH1 NH2 REMARK 480 GLU A 184 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 2 CA - CB - SG ANGL. DEV. = -13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 47 -7.07 85.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 DBREF 6OE7 A 2 270 UNP Q96FZ2 HMCES_HUMAN 2 270 DBREF 6OE7 C 1 6 PDB 6OE7 6OE7 1 6 DBREF 6OE7 B 101 112 PDB 6OE7 6OE7 101 112 SEQADV 6OE7 ALA A 271 UNP Q96FZ2 EXPRESSION TAG SEQADV 6OE7 GLU A 272 UNP Q96FZ2 EXPRESSION TAG SEQADV 6OE7 ASN A 273 UNP Q96FZ2 EXPRESSION TAG SEQADV 6OE7 LEU A 274 UNP Q96FZ2 EXPRESSION TAG SEQADV 6OE7 TYR A 275 UNP Q96FZ2 EXPRESSION TAG SEQADV 6OE7 PHE A 276 UNP Q96FZ2 EXPRESSION TAG SEQADV 6OE7 GLN A 277 UNP Q96FZ2 EXPRESSION TAG SEQRES 1 A 276 CYS GLY ARG THR SER CYS HIS LEU PRO ARG ASP VAL LEU SEQRES 2 A 276 THR ARG ALA CYS ALA TYR GLN ASP ARG ARG GLY GLN GLN SEQRES 3 A 276 ARG LEU PRO GLU TRP ARG ASP PRO ASP LYS TYR CYS PRO SEQRES 4 A 276 SER TYR ASN LYS SER PRO GLN SER ASN SER PRO VAL LEU SEQRES 5 A 276 LEU SER ARG LEU HIS PHE GLU LYS ASP ALA ASP SER SER SEQRES 6 A 276 GLU ARG ILE ILE ALA PRO MET ARG TRP GLY LEU VAL PRO SEQRES 7 A 276 SER TRP PHE LYS GLU SER ASP PRO SER LYS LEU GLN PHE SEQRES 8 A 276 ASN THR THR ASN CYS ARG SER ASP THR VAL MET GLU LYS SEQRES 9 A 276 ARG SER PHE LYS VAL PRO LEU GLY LYS GLY ARG ARG CYS SEQRES 10 A 276 VAL VAL LEU ALA ASP GLY PHE TYR GLU TRP GLN ARG CYS SEQRES 11 A 276 GLN GLY THR ASN GLN ARG GLN PRO TYR PHE ILE TYR PHE SEQRES 12 A 276 PRO GLN ILE LYS THR GLU LYS SER GLY SER ILE GLY ALA SEQRES 13 A 276 ALA ASP SER PRO GLU ASN TRP GLU LYS VAL TRP ASP ASN SEQRES 14 A 276 TRP ARG LEU LEU THR MET ALA GLY ILE PHE ASP CYS TRP SEQRES 15 A 276 GLU PRO PRO GLU GLY GLY ASP VAL LEU TYR SER TYR THR SEQRES 16 A 276 ILE ILE THR VAL ASP SER CYS LYS GLY LEU SER ASP ILE SEQRES 17 A 276 HIS HIS ARG MET PRO ALA ILE LEU ASP GLY GLU GLU ALA SEQRES 18 A 276 VAL SER LYS TRP LEU ASP PHE GLY GLU VAL SER THR GLN SEQRES 19 A 276 GLU ALA LEU LYS LEU ILE HIS PRO THR GLU ASN ILE THR SEQRES 20 A 276 PHE HIS ALA VAL SER SER VAL VAL ASN ASN SER ARG ASN SEQRES 21 A 276 ASN THR PRO GLU CYS LEU ALA PRO VAL ALA GLU ASN LEU SEQRES 22 A 276 TYR PHE GLN SEQRES 1 C 6 DG DT DC DT DG DG SEQRES 1 B 12 DC DC DA DG DA DC DG DT DRZ DG DT DT HET DRZ B 109 11 HET UNX A 301 1 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET UNX A 305 1 HET EDO A 306 4 HET EDO A 307 4 HET UNX A 308 1 HET UNX B 201 1 HETNAM DRZ 3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE HETNAM UNX UNKNOWN ATOM OR ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 DRZ C5 H11 O7 P FORMUL 4 UNX 4(X) FORMUL 5 EDO 5(C2 H6 O2) FORMUL 13 HOH *33(H2 O) HELIX 1 AA1 PRO A 10 ALA A 17 1 8 HELIX 2 AA2 ASP A 34 TYR A 38 5 5 HELIX 3 AA3 LEU A 57 PHE A 59 5 3 HELIX 4 AA4 ASP A 86 LEU A 90 5 5 HELIX 5 AA5 THR A 101 GLU A 104 5 4 HELIX 6 AA6 LYS A 105 LYS A 114 1 10 HELIX 7 AA7 PRO A 161 ASN A 170 1 10 HELIX 8 AA8 CYS A 203 ASP A 208 1 6 HELIX 9 AA9 GLY A 219 ASP A 228 1 10 HELIX 10 AB1 SER A 233 LYS A 239 1 7 HELIX 11 AB2 SER A 253 ASN A 258 5 6 HELIX 12 AB3 THR A 263 LEU A 267 5 5 SHEET 1 AA1 5 SER A 41 LYS A 44 0 SHEET 2 AA1 5 THR A 5 CYS A 7 -1 N THR A 5 O LYS A 44 SHEET 3 AA1 5 GLY A 124 ARG A 130 -1 O GLY A 124 N SER A 6 SHEET 4 AA1 5 ARG A 137 TYR A 143 -1 O ILE A 142 N PHE A 125 SHEET 5 AA1 5 THR A 248 ALA A 251 -1 O HIS A 250 N PHE A 141 SHEET 1 AA2 2 TYR A 20 GLN A 21 0 SHEET 2 AA2 2 GLN A 27 ARG A 28 -1 O ARG A 28 N TYR A 20 SHEET 1 AA3 4 GLU A 31 TRP A 32 0 SHEET 2 AA3 4 ARG A 68 TRP A 75 1 O ILE A 70 N GLU A 31 SHEET 3 AA3 4 LEU A 192 ASP A 201 1 O TYR A 193 N ARG A 74 SHEET 4 AA3 4 ASN A 96 ARG A 98 1 N CYS A 97 O THR A 199 SHEET 1 AA4 3 ASN A 96 ARG A 98 0 SHEET 2 AA4 3 LEU A 192 ASP A 201 1 O THR A 199 N CYS A 97 SHEET 3 AA4 3 ARG A 212 PRO A 214 -1 O MET A 213 N VAL A 200 SHEET 1 AA5 7 ARG A 212 PRO A 214 0 SHEET 2 AA5 7 LEU A 192 ASP A 201 -1 N VAL A 200 O MET A 213 SHEET 3 AA5 7 LEU A 174 TRP A 183 -1 N TRP A 183 O LEU A 192 SHEET 4 AA5 7 ARG A 117 ALA A 122 -1 N CYS A 118 O GLY A 178 SHEET 5 AA5 7 ASN A 49 SER A 55 -1 N LEU A 53 O VAL A 119 SHEET 6 AA5 7 ARG A 68 TRP A 75 -1 O ILE A 69 N LEU A 54 SHEET 7 AA5 7 GLU A 31 TRP A 32 1 N GLU A 31 O ILE A 70 LINK N CYS A 2 C1' DRZ B 109 1555 1555 1.47 LINK SG CYS A 2 C1' DRZ B 109 1555 1555 1.80 LINK O3' DT B 108 P DRZ B 109 1555 1555 1.61 SITE 1 AC1 8 ALA A 17 CYS A 18 LEU A 53 ARG A 68 SITE 2 AC1 8 LEU A 173 THR A 175 GLU A 220 HOH A 409 SITE 1 AC2 3 LYS A 37 ASN A 49 TYR A 193 SITE 1 AC3 4 ARG A 16 ASP A 34 PRO A 35 ASP A 36 SITE 1 AC4 2 THR A 248 PHE A 249 SITE 1 AC5 1 GLN A 47 CRYST1 55.509 51.534 149.720 90.00 92.72 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018015 0.000000 0.000856 0.00000 SCALE2 0.000000 0.019405 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006687 0.00000