PDB Short entry for 6P5C HEADER REPLICATION/DNA 30-MAY-19 6P5C TITLE BACILLUS FRAGMENT DNA POLYMERASE MUTANT I716M COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*C)-3'); COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*GP*CP*GP*TP*GP*AP*TP*CP*G)-3'); COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA POLYMERASE I; COMPND 11 CHAIN: A; COMPND 12 EC: 2.7.7.7; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 11 ORGANISM_TAXID: 1422; SOURCE 12 GENE: DPO1, POLA; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET21A(+) KEYWDS POLYMERASE, REPLICATION, TRANSFERASE, REPLICATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.Y.WU REVDAT 2 11-OCT-23 6P5C 1 REMARK REVDAT 1 25-MAR-20 6P5C 0 JRNL AUTH M.L.HAMM,A.A.GARCIA,R.GILBERT,M.JOHRI,M.RICART,S.L.SHOLES, JRNL AUTH 2 L.A.MURRAY-NERGER,E.Y.WU JRNL TITL THE IMPORTANCE OF ILE716 TOWARD THE MUTAGENICITY OF JRNL TITL 2 8-OXO-2'-DEOXYGUANOSINE WITH BACILLUS FRAGMENT DNA JRNL TITL 3 POLYMERASE. JRNL REF DNA REPAIR (AMST.) V. 89 02826 2020 JRNL REFN ISSN 1568-7856 JRNL PMID 32113909 JRNL DOI 10.1016/J.DNAREP.2020.102826 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 41136 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2134 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2487 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.6630 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.6740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4658 REMARK 3 NUCLEIC ACID ATOMS : 366 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.260 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.910 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.860 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5167 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4740 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7060 ; 1.524 ; 1.601 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10986 ; 1.342 ; 1.637 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 580 ; 7.021 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 268 ;33.269 ;22.201 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 876 ;16.798 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;18.854 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 664 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5499 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1078 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6P5C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1000241561. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44306 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 1L3S REMARK 200 REMARK 200 REMARK: ~0.1X0.1X0.4 MM ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% SATURATED AMMONIUM SULFATE, 100 MM REMARK 280 MES, 2% METHYLPENTANEDIOL, 10 MM MAGNESIUM SULFATE, PH 5.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.10850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.63950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.76050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.63950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.10850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.76050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 298 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 27 O5' - P - OP2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 843 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 372 61.22 61.81 REMARK 500 ASP A 402 97.31 -168.04 REMARK 500 ALA A 421 41.72 -81.76 REMARK 500 LYS A 434 7.94 -64.19 REMARK 500 LEU A 477 -72.67 -112.82 REMARK 500 GLN A 524 155.40 170.71 REMARK 500 THR A 550 -73.70 -134.74 REMARK 500 LYS A 551 -69.16 -161.38 REMARK 500 LEU A 610 -57.47 -124.52 REMARK 500 ILE A 628 -34.75 -150.67 REMARK 500 HIS A 829 -56.44 77.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 904 DBREF 6P5C B 21 29 PDB 6P5C 6P5C 21 29 DBREF 6P5C C 6 14 PDB 6P5C 6P5C 6 14 DBREF 6P5C A 298 876 UNP D9N168 D9N168_GEOSE 1 579 SEQADV 6P5C MET A 296 UNP D9N168 INITIATING METHIONINE SEQADV 6P5C ALA A 297 UNP D9N168 EXPRESSION TAG SEQADV 6P5C ASP A 598 UNP D9N168 ALA 301 CONFLICT SEQADV 6P5C VAL A 713 UNP D9N168 PRO 416 CONFLICT SEQADV 6P5C MET A 716 UNP D9N168 ILE 419 ENGINEERED MUTATION SEQRES 1 B 9 DC DG DA DT DC DA DC DG DC SEQRES 1 C 9 DG DC DG DT DG DA DT DC DG SEQRES 1 A 581 MET ALA LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR SEQRES 2 A 581 GLU GLU MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU SEQRES 3 A 581 VAL VAL GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY SEQRES 4 A 581 ILE ALA VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG SEQRES 5 A 581 PRO GLU THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP SEQRES 6 A 581 LEU GLY ASP GLU THR LYS LYS LYS SER MET PHE ASP SER SEQRES 7 A 581 LYS ARG ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU SEQRES 8 A 581 LEU CYS GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR SEQRES 9 A 581 LEU LEU ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA SEQRES 10 A 581 ALA ALA LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP SEQRES 11 A 581 GLU ALA VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO SEQRES 12 A 581 ASP GLU PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA SEQRES 13 A 581 ALA ALA ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU SEQRES 14 A 581 LEU ARG ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU SEQRES 15 A 581 GLU GLN PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE SEQRES 16 A 581 ALA GLY VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET SEQRES 17 A 581 GLY LYS GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN SEQRES 18 A 581 ARG ILE TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SEQRES 19 A 581 SER PRO LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU SEQRES 20 A 581 GLN LEU PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER SEQRES 21 A 581 THR SER ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS SEQRES 22 A 581 GLU ILE VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY SEQRES 23 A 581 LYS LEU GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL SEQRES 24 A 581 VAL ARG PRO ASP THR LYS LYS VAL HIS THR ILE PHE ASN SEQRES 25 A 581 GLN ALA LEU THR GLN THR GLY ARG LEU SER SER THR GLU SEQRES 26 A 581 PRO ASN LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY SEQRES 27 A 581 ARG LYS ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP SEQRES 28 A 581 TRP LEU ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU SEQRES 29 A 581 ARG VAL LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET SEQRES 30 A 581 GLU ALA PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR SEQRES 31 A 581 ALA MET ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR SEQRES 32 A 581 PRO ASN MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY SEQRES 33 A 581 ILE VAL TYR GLY MET SER ASP TYR GLY LEU ALA GLN ASN SEQRES 34 A 581 LEU ASN ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU SEQRES 35 A 581 ARG TYR PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET SEQRES 36 A 581 GLU ASN ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL SEQRES 37 A 581 THR THR LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE SEQRES 38 A 581 THR SER ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG SEQRES 39 A 581 MET ALA MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP SEQRES 40 A 581 ILE ILE LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU SEQRES 41 A 581 LYS GLU GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL SEQRES 42 A 581 HIS ASP GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET SEQRES 43 A 581 GLU ARG LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN SEQRES 44 A 581 ALA VAL THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS SEQRES 45 A 581 TYR GLY SER THR TRP TYR ASP ALA LYS HET SO4 A 901 5 HET SO4 A 902 5 HET SO4 A 903 5 HET SO4 A 904 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 HOH *144(H2 O) HELIX 1 AA1 THR A 308 ALA A 313 5 6 HELIX 2 AA2 ARG A 347 LEU A 352 1 6 HELIX 3 AA3 ASP A 354 ASP A 363 1 10 HELIX 4 AA4 ASP A 372 TRP A 382 1 11 HELIX 5 AA5 LEU A 394 ASP A 402 1 9 HELIX 6 AA6 PRO A 403 GLY A 406 5 4 HELIX 7 AA7 ASP A 409 MET A 416 1 8 HELIX 8 AA8 PRO A 424 GLY A 430 1 7 HELIX 9 AA9 ASP A 439 ASN A 468 1 30 HELIX 10 AB1 GLN A 470 LEU A 477 1 8 HELIX 11 AB2 LEU A 477 GLY A 492 1 16 HELIX 12 AB3 ASP A 496 ALA A 522 1 27 HELIX 13 AB4 SER A 530 GLU A 540 1 11 HELIX 14 AB5 SER A 557 ALA A 565 1 9 HELIX 15 AB6 PRO A 566 HIS A 568 5 3 HELIX 16 AB7 GLU A 569 TYR A 587 1 19 HELIX 17 AB8 TYR A 587 VAL A 595 1 9 HELIX 18 AB9 LEU A 630 LYS A 635 1 6 HELIX 19 AC1 ILE A 636 GLN A 638 5 3 HELIX 20 AC2 GLN A 656 GLU A 667 1 12 HELIX 21 AC3 ASP A 668 ARG A 677 1 10 HELIX 22 AC4 ASP A 680 GLN A 691 1 12 HELIX 23 AC5 SER A 693 VAL A 697 5 5 HELIX 24 AC6 THR A 698 TYR A 714 1 17 HELIX 25 AC7 SER A 717 ASN A 726 1 10 HELIX 26 AC8 SER A 728 PHE A 743 1 16 HELIX 27 AC9 PHE A 743 GLY A 761 1 19 HELIX 28 AD1 PRO A 774 SER A 778 5 5 HELIX 29 AD2 ASN A 780 GLU A 818 1 39 HELIX 30 AD3 GLU A 840 ALA A 855 1 16 HELIX 31 AD4 THR A 871 ALA A 875 5 5 SHEET 1 AA1 6 THR A 302 ALA A 304 0 SHEET 2 AA1 6 GLY A 342 LEU A 346 1 O ARG A 343 N THR A 302 SHEET 3 AA1 6 GLY A 334 ASN A 339 -1 N VAL A 337 O PHE A 344 SHEET 4 AA1 6 LYS A 315 GLU A 321 -1 N ALA A 317 O VAL A 338 SHEET 5 AA1 6 LYS A 367 MET A 370 1 O SER A 369 N LEU A 318 SHEET 6 AA1 6 VAL A 390 ASP A 393 1 O PHE A 392 N MET A 370 SHEET 1 AA2 3 LYS A 601 VAL A 602 0 SHEET 2 AA2 3 VAL A 493 VAL A 495 -1 N VAL A 493 O VAL A 602 SHEET 3 AA2 3 PHE A 640 VAL A 641 -1 O VAL A 641 N LYS A 494 SHEET 1 AA3 2 ILE A 605 ASN A 607 0 SHEET 2 AA3 2 SER A 617 THR A 619 -1 O THR A 619 N ILE A 605 SHEET 1 AA4 4 HIS A 823 GLN A 827 0 SHEET 2 AA4 4 GLU A 831 PRO A 837 -1 O ILE A 833 N LEU A 825 SHEET 3 AA4 4 TRP A 647 TYR A 654 -1 N ALA A 652 O LEU A 832 SHEET 4 AA4 4 VAL A 864 GLY A 869 -1 O HIS A 867 N ALA A 651 SHEET 1 AA5 2 TYR A 762 THR A 764 0 SHEET 2 AA5 2 ARG A 770 TYR A 772 -1 O ARG A 771 N VAL A 763 CISPEP 1 GLU A 620 PRO A 621 0 -1.25 SITE 1 AC1 3 GLN A 656 ARG A 702 LYS A 706 SITE 1 AC2 3 HIS A 568 ARG A 779 ARG A 819 SITE 1 AC3 5 MET A 296 MET A 299 ALA A 300 ARG A 343 SITE 2 AC3 5 ARG A 677 SITE 1 AC4 3 SER A 645 SER A 728 ARG A 729 CRYST1 88.217 93.521 105.279 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011336 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010693 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009499 0.00000